Wall clock time and date at job start Sun Mar 29 2020 21:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31365 * 1 3 3 Si 1.86807 * 119.99841 * 2 1 4 4 H 1.48502 * 109.46934 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46528 * 299.99315 * 3 2 1 6 6 H 1.48492 * 109.47353 * 59.99215 * 3 2 1 7 7 C 1.39045 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00063 * 180.02562 * 7 2 1 9 9 N 1.36866 * 120.00415 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00495 * 179.97438 * 9 7 2 11 11 O 1.21593 * 120.00070 * 0.02562 * 10 9 7 12 12 C 1.47731 * 120.00302 * 180.02562 * 10 9 7 13 13 C 1.39668 * 120.13658 * 359.97438 * 12 10 9 14 14 C 1.37922 * 119.89895 * 180.02562 * 13 12 10 15 15 C 1.38362 * 120.17848 * 359.74596 * 14 13 12 16 16 C 1.50699 * 119.85823 * 180.25431 * 15 14 13 17 17 O 1.42903 * 109.47412 * 0.25676 * 16 15 14 18 18 C 1.38568 * 120.27918 * 0.51363 * 15 14 13 19 19 F 1.35104 * 119.94879 * 179.76098 * 18 15 14 20 20 C 1.38185 * 120.09990 * 359.48859 * 18 15 14 21 21 H 0.96997 * 120.00027 * 0.02562 * 1 2 3 22 22 H 0.97005 * 119.99933 * 0.02562 * 9 7 2 23 23 H 1.08006 * 120.05045 * 0.04730 * 13 12 10 24 24 H 1.08005 * 119.91152 * 180.02562 * 14 13 12 25 25 H 1.08998 * 109.46935 * 120.26071 * 16 15 14 26 26 H 1.09002 * 109.47167 * 240.25771 * 16 15 14 27 27 H 0.96697 * 113.99744 * 180.02562 * 17 16 15 28 28 H 1.07999 * 120.09337 * 180.23142 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.7077 1.3465 0.0006 5 1 1.8889 2.3963 -1.2126 6 1 1.8888 2.3966 1.2123 7 6 2.0089 -1.2041 0.0005 8 1 3.0889 -1.2041 0.0010 9 7 1.3247 -2.3895 0.0005 10 6 1.9986 -3.5567 0.0005 11 8 3.2145 -3.5567 0.0010 12 6 1.2600 -4.8361 0.0000 13 6 -0.1367 -4.8395 0.0000 14 6 -0.8213 -6.0369 0.0000 15 6 -0.1281 -7.2343 -0.0053 16 6 -0.8835 -8.5384 -0.0111 17 8 -2.2881 -8.2754 -0.0160 18 6 1.2575 -7.2396 0.0000 19 9 1.9275 -8.4128 -0.0003 20 6 1.9551 -6.0468 0.0001 21 1 -0.4850 0.8400 -0.0004 22 1 0.3546 -2.3896 -0.0002 23 1 -0.6798 -3.9060 -0.0004 24 1 -1.9013 -6.0397 -0.0005 25 1 -0.6174 -9.1084 -0.9013 26 1 -0.6244 -9.1123 0.8787 27 1 -2.8372 -9.0713 -0.0194 28 1 3.0351 -6.0510 0.0005 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336052993.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:52 Heat of formation + Delta-G solvation = -111.337359 kcal Electronic energy + Delta-G solvation = -16125.646194 eV Core-core repulsion = 13055.896402 eV Total energy + Delta-G solvation = -3069.749791 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.74037 -39.35347 -37.79658 -36.43644 -34.17181 -31.82524 -31.19312 -30.14903 -26.78224 -24.81381 -22.40046 -22.05479 -19.67700 -18.34842 -17.55863 -17.23136 -15.76012 -15.73232 -15.61701 -15.26536 -14.69070 -14.68970 -14.01655 -13.72428 -13.59393 -13.13786 -12.70196 -12.46680 -11.78375 -11.70639 -11.24185 -11.20744 -10.94589 -10.43536 -10.43213 -10.36727 -9.70501 -8.62786 -8.59195 -8.38247 -8.15220 -6.64118 -3.95771 1.10596 1.50307 3.07369 3.18455 3.25846 3.47616 3.96153 4.02394 4.36691 4.40290 4.73398 4.94537 5.08885 5.21028 5.21975 5.29818 5.53218 5.70411 5.80987 6.09269 6.32971 6.42148 6.60276 6.72826 7.11913 7.35911 7.43728 7.88203 8.42000 8.98182 9.33033 9.89145 10.52416 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.042499 B = 0.005463 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.679976 B = 5124.055442 C = 5767.585346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.024 3.976 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.293 4.293 8 H 0.110 0.890 9 N -0.537 5.537 10 C 0.460 3.540 11 O -0.596 6.596 12 C -0.063 4.063 13 C -0.117 4.117 14 C -0.071 4.071 15 C -0.136 4.136 16 C 0.125 3.875 17 O -0.566 6.566 18 C 0.093 3.907 19 F -0.143 7.143 20 C -0.113 4.113 21 H 0.277 0.723 22 H 0.395 0.605 23 H 0.135 0.865 24 H 0.141 0.859 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.382 0.618 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.417 -12.777 -0.016 13.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.180 4.180 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.423 4.423 8 H 0.128 0.872 9 N -0.170 5.170 10 C 0.248 3.752 11 O -0.483 6.483 12 C -0.067 4.067 13 C -0.136 4.136 14 C -0.089 4.089 15 C -0.138 4.138 16 C 0.048 3.952 17 O -0.372 6.372 18 C 0.074 3.926 19 F -0.122 7.122 20 C -0.133 4.133 21 H 0.087 0.913 22 H 0.230 0.770 23 H 0.153 0.847 24 H 0.159 0.841 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.229 0.771 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.510 -11.973 -0.013 12.794 hybrid contribution -0.295 0.022 -0.002 0.296 sum -4.805 -11.951 -0.016 12.881 Atomic orbital electron populations 1.69594 1.06193 1.28874 1.47769 1.25429 0.95725 1.00239 0.96602 0.85694 0.79824 0.80325 0.77960 1.18888 1.20425 1.20430 1.19938 0.93888 0.82032 1.46453 0.87193 1.41919 1.09603 1.04734 1.60793 1.17603 0.87472 0.83114 0.86974 1.90609 1.13118 1.86859 1.57708 1.20217 0.93298 0.94470 0.98717 1.21538 0.93446 0.98797 0.99847 1.20735 1.00671 0.90175 0.97358 1.19664 0.91313 0.96202 1.06633 1.20687 0.80760 0.93398 1.00375 1.86451 1.16557 1.36414 1.97780 1.17209 0.88844 0.81209 1.05339 1.91454 1.80711 1.45801 1.94208 1.21084 1.01495 0.89608 1.01131 0.91306 0.77007 0.84733 0.84118 0.92237 0.92242 0.77111 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.13 13.05 55.50 0.72 -22.41 15 2 C 0.02 0.62 5.50 -17.45 -0.10 0.53 15 3 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 15 4 H -0.26 -5.74 7.11 56.52 0.40 -5.34 15 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 6 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 7 C -0.29 -8.04 9.68 -15.01 -0.15 -8.18 15 8 H 0.11 3.14 7.15 -52.48 -0.38 2.77 15 9 N -0.54 -13.70 5.23 -11.87 -0.06 -13.77 15 10 C 0.46 11.44 7.72 -12.38 -0.10 11.35 15 11 O -0.60 -16.73 15.92 5.28 0.08 -16.65 15 12 C -0.06 -1.28 5.87 -104.98 -0.62 -1.90 15 13 C -0.12 -2.05 9.54 -39.16 -0.37 -2.42 15 14 C -0.07 -1.10 9.36 -39.65 -0.37 -1.47 15 15 C -0.14 -2.03 5.89 -104.45 -0.62 -2.64 15 16 C 0.13 1.40 7.00 36.01 0.25 1.65 15 17 O -0.57 -5.85 12.12 -35.23 -0.43 -6.28 15 18 C 0.09 1.51 7.24 -39.48 -0.29 1.23 15 19 F -0.14 -2.18 16.79 2.25 0.04 -2.14 15 20 C -0.11 -2.11 9.57 -39.09 -0.37 -2.48 15 21 H 0.28 6.76 8.31 -40.82 -0.34 6.42 15 22 H 0.39 9.47 5.93 -40.82 -0.24 9.23 15 23 H 0.13 2.28 6.40 -52.48 -0.34 1.94 15 24 H 0.14 1.96 6.99 -52.48 -0.37 1.59 15 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 15 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 15 27 H 0.38 1.92 9.12 45.56 0.42 2.34 15 28 H 0.15 2.76 7.65 -52.49 -0.40 2.35 15 LS Contribution 259.19 15.07 3.91 3.91 Total: -1.00 -31.06 259.19 -4.77 -35.83 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -1.29 Total: 10.61 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.72 Total: -4.34 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.66 Total: -36.17 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.34 Total: -22.92 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.06 -4.77 -35.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336052993.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.505 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds