Wall clock time and date at job start Sun Mar 29 2020 21:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31365 * 1 3 3 Si 1.86807 * 119.99841 * 2 1 4 4 H 1.48502 * 109.46934 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46528 * 299.99315 * 3 2 1 6 6 H 1.48492 * 109.47353 * 59.99215 * 3 2 1 7 7 C 1.39045 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00063 * 180.02562 * 7 2 1 9 9 N 1.36866 * 120.00415 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00495 * 179.97438 * 9 7 2 11 11 O 1.21593 * 120.00070 * 0.02562 * 10 9 7 12 12 C 1.47731 * 120.00302 * 180.02562 * 10 9 7 13 13 C 1.39668 * 120.13658 * 359.97438 * 12 10 9 14 14 C 1.37922 * 119.89895 * 180.02562 * 13 12 10 15 15 C 1.38362 * 120.17848 * 359.74596 * 14 13 12 16 16 C 1.50699 * 119.85823 * 180.25431 * 15 14 13 17 17 O 1.42903 * 109.47412 * 0.25676 * 16 15 14 18 18 C 1.38568 * 120.27918 * 0.51363 * 15 14 13 19 19 F 1.35104 * 119.94879 * 179.76098 * 18 15 14 20 20 C 1.38185 * 120.09990 * 359.48859 * 18 15 14 21 21 H 0.96997 * 120.00027 * 0.02562 * 1 2 3 22 22 H 0.97005 * 119.99933 * 0.02562 * 9 7 2 23 23 H 1.08006 * 120.05045 * 0.04730 * 13 12 10 24 24 H 1.08005 * 119.91152 * 180.02562 * 14 13 12 25 25 H 1.08998 * 109.46935 * 120.26071 * 16 15 14 26 26 H 1.09002 * 109.47167 * 240.25771 * 16 15 14 27 27 H 0.96697 * 113.99744 * 180.02562 * 17 16 15 28 28 H 1.07999 * 120.09337 * 180.23142 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.7077 1.3465 0.0006 5 1 1.8889 2.3963 -1.2126 6 1 1.8888 2.3966 1.2123 7 6 2.0089 -1.2041 0.0005 8 1 3.0889 -1.2041 0.0010 9 7 1.3247 -2.3895 0.0005 10 6 1.9986 -3.5567 0.0005 11 8 3.2145 -3.5567 0.0010 12 6 1.2600 -4.8361 0.0000 13 6 -0.1367 -4.8395 0.0000 14 6 -0.8213 -6.0369 0.0000 15 6 -0.1281 -7.2343 -0.0053 16 6 -0.8835 -8.5384 -0.0111 17 8 -2.2881 -8.2754 -0.0160 18 6 1.2575 -7.2396 0.0000 19 9 1.9275 -8.4128 -0.0003 20 6 1.9551 -6.0468 0.0001 21 1 -0.4850 0.8400 -0.0004 22 1 0.3546 -2.3896 -0.0002 23 1 -0.6798 -3.9060 -0.0004 24 1 -1.9013 -6.0397 -0.0005 25 1 -0.6174 -9.1084 -0.9013 26 1 -0.6244 -9.1123 0.8787 27 1 -2.8372 -9.0713 -0.0194 28 1 3.0351 -6.0510 0.0005 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336052993.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:51 Heat of formation + Delta-G solvation = -134.420048 kcal Electronic energy + Delta-G solvation = -16126.647134 eV Core-core repulsion = 13055.896402 eV Total energy + Delta-G solvation = -3070.750732 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.01055 -40.95094 -39.34531 -37.45270 -36.18263 -33.62950 -32.66607 -31.57375 -28.22213 -26.50934 -23.76384 -23.48970 -21.33942 -20.28780 -18.87022 -18.48500 -17.11311 -17.02545 -16.92063 -16.85326 -16.38685 -15.78462 -15.59030 -15.54276 -14.96947 -14.75977 -14.23795 -13.69708 -13.58113 -13.21561 -12.92402 -12.56419 -12.33150 -12.24401 -12.12423 -11.64808 -11.25391 -10.61295 -10.18269 -9.99075 -9.69585 -8.60342 -6.04873 -0.31054 0.12439 1.36529 1.41170 1.55910 1.89222 2.23510 2.65331 2.82738 3.11421 3.22151 3.28869 3.71867 3.86803 4.10550 4.18229 4.22482 4.46549 4.50478 4.69990 4.98929 5.05082 5.22311 5.29934 5.31677 5.75540 5.87914 6.43886 6.94037 6.97085 7.35882 7.92742 8.56802 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.042499 B = 0.005463 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.679976 B = 5124.055442 C = 5767.585346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.006 4.006 3 Si 1.001 2.999 4 H -0.272 1.272 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.339 4.339 8 H 0.085 0.915 9 N -0.544 5.544 10 C 0.459 3.541 11 O -0.637 6.637 12 C -0.092 4.092 13 C -0.108 4.108 14 C -0.066 4.066 15 C -0.116 4.116 16 C 0.126 3.874 17 O -0.580 6.580 18 C 0.096 3.904 19 F -0.134 7.134 20 C -0.119 4.119 21 H 0.285 0.715 22 H 0.400 0.600 23 H 0.137 0.863 24 H 0.165 0.835 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.406 0.594 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.245 -14.232 -0.021 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.208 4.208 3 Si 0.823 3.177 4 H -0.196 1.196 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.103 0.897 9 N -0.178 5.178 10 C 0.248 3.752 11 O -0.527 6.527 12 C -0.096 4.096 13 C -0.128 4.128 14 C -0.084 4.084 15 C -0.118 4.118 16 C 0.049 3.951 17 O -0.390 6.390 18 C 0.077 3.923 19 F -0.112 7.112 20 C -0.140 4.140 21 H 0.095 0.905 22 H 0.236 0.764 23 H 0.155 0.845 24 H 0.183 0.817 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.258 0.742 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.391 -13.468 -0.018 14.907 hybrid contribution 0.184 0.221 -0.002 0.288 sum -6.207 -13.247 -0.019 14.629 Atomic orbital electron populations 1.69636 1.07023 1.30119 1.47646 1.26214 0.96637 1.02734 0.95259 0.84767 0.78028 0.76230 0.78691 1.19646 1.19117 1.19127 1.19867 0.93191 0.83644 1.50100 0.89700 1.41882 1.09722 1.04626 1.61575 1.18338 0.87282 0.84466 0.85104 1.90554 1.15173 1.87854 1.59135 1.19842 0.94345 0.92602 1.02807 1.21586 0.92132 1.00119 0.98914 1.20964 1.01709 0.89306 0.96402 1.20172 0.90883 0.98099 1.02618 1.20736 0.81141 0.90965 1.02252 1.86376 1.16150 1.38618 1.97843 1.17080 0.89419 0.80591 1.05218 1.91480 1.80709 1.44934 1.94099 1.21040 1.01134 0.90320 1.01487 0.90537 0.76414 0.84547 0.81745 0.90210 0.90202 0.74189 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.53 13.05 21.68 0.28 -47.25 15 2 C -0.01 -0.34 5.50 84.96 0.47 0.13 15 3 Si 1.00 41.84 29.55 68.60 2.03 43.87 15 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 5 H -0.27 -10.56 7.11 99.48 0.71 -9.86 15 6 H -0.27 -10.57 7.11 99.48 0.71 -9.86 15 7 C -0.34 -19.37 9.68 84.10 0.81 -18.56 15 8 H 0.09 5.16 7.15 -2.91 -0.02 5.14 15 9 N -0.54 -28.98 5.23 -309.73 -1.62 -30.60 15 10 C 0.46 23.90 7.72 86.75 0.67 24.57 15 11 O -0.64 -37.83 15.92 -4.01 -0.06 -37.89 15 12 C -0.09 -3.83 5.87 -20.09 -0.12 -3.95 15 13 C -0.11 -3.71 9.54 22.54 0.22 -3.50 15 14 C -0.07 -1.85 9.36 22.22 0.21 -1.64 15 15 C -0.12 -3.06 5.89 -19.76 -0.12 -3.18 15 16 C 0.13 2.22 7.00 71.24 0.50 2.72 15 17 O -0.58 -9.17 12.12 -148.98 -1.81 -10.98 15 18 C 0.10 2.94 7.24 22.34 0.16 3.10 15 19 F -0.13 -3.73 16.79 44.97 0.75 -2.98 15 20 C -0.12 -4.48 9.57 22.59 0.22 -4.27 15 21 H 0.28 13.76 8.31 -92.71 -0.77 12.99 15 22 H 0.40 19.86 5.93 -92.70 -0.55 19.31 15 23 H 0.14 4.59 6.40 -2.91 -0.02 4.57 15 24 H 0.17 3.92 6.99 -2.91 -0.02 3.90 15 25 H 0.08 1.17 8.14 -2.39 -0.02 1.15 15 26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 15 27 H 0.41 2.10 9.12 -74.06 -0.68 1.42 15 28 H 0.13 5.22 7.65 -2.91 -0.02 5.20 15 Total: -1.00 -68.74 259.19 2.60 -66.15 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.00 Total: 24.25 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 3.02 Total: -4.57 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -1.34 Total: -77.85 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -1.87 Total: -48.87 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.75 Total: -2.98 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -68.74 2.60 -66.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336052993.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.273 kcal (2) G-P(sol) polarization free energy of solvation -68.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds