Wall clock time and date at job start Sun Mar 29 2020 22:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00288 * 2 1 4 4 H 1.48500 * 109.47374 * 270.00182 * 3 2 1 5 5 H 1.48496 * 109.47056 * 30.00139 * 3 2 1 6 6 H 1.48499 * 109.47408 * 150.00307 * 3 2 1 7 7 C 1.37875 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00687 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99898 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47293 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00173 * 179.97438 * 10 9 7 12 12 O 1.21947 * 119.99700 * 359.97438 * 11 10 9 13 13 N 1.33191 * 120.00142 * 179.97438 * 11 10 9 14 14 C 1.34396 * 120.00164 * 236.34446 * 13 11 10 15 15 C 1.41265 * 120.67271 * 187.62289 * 14 13 11 16 16 C 1.35271 * 119.29101 * 180.02562 * 15 14 13 17 17 N 1.35468 * 120.73436 * 0.02562 * 16 15 14 18 18 H 0.97000 * 119.26984 * 180.02562 * 17 16 15 19 19 C 1.35658 * 121.45142 * 359.97390 * 17 16 15 20 20 C 1.35400 * 120.64306 * 359.76068 * 19 17 16 21 21 F 1.35104 * 120.39179 * 180.28261 * 20 19 17 22 22 H 0.97006 * 119.99566 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47670 * 59.99633 * 9 7 2 24 24 H 1.09006 * 109.46780 * 299.99910 * 9 7 2 25 25 H 0.96997 * 120.00121 * 359.97438 * 10 9 7 26 26 H 1.08001 * 120.35136 * 359.97438 * 15 14 13 27 27 H 1.08003 * 119.62897 * 180.02562 * 16 15 14 28 28 H 1.07995 * 119.68209 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2029 -3.6127 -0.0015 11 6 1.7536 -4.8834 -0.0019 12 8 0.5547 -5.1061 -0.0019 13 7 2.6191 -5.8958 -0.0022 14 6 2.5655 -6.8254 -0.9712 15 6 3.3661 -7.9871 -0.9005 16 6 3.2903 -8.9045 -1.8917 17 7 2.4586 -8.7188 -2.9448 18 1 2.4209 -9.3905 -3.6435 19 6 1.6767 -7.6146 -3.0430 20 6 1.7030 -6.6624 -2.0807 21 9 0.9179 -5.5675 -2.1809 22 1 -0.4850 0.8401 0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6240 -2.5574 0.8881 25 1 3.1566 -3.4355 -0.0010 26 1 4.0322 -8.1407 -0.0644 27 1 3.8997 -9.7949 -1.8430 28 1 1.0236 -7.4958 -3.8950 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336454503.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:00 Heat of formation + Delta-G solvation = -8.789089 kcal Electronic energy + Delta-G solvation = -16427.959715 eV Core-core repulsion = 13394.949502 eV Total energy + Delta-G solvation = -3033.010214 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.081 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.51502 -40.57416 -38.63493 -34.91690 -33.74078 -32.09596 -31.56620 -30.40521 -26.98556 -24.15224 -23.57329 -22.08322 -19.75991 -19.28337 -17.95662 -17.30036 -16.43424 -15.79748 -15.70368 -14.99150 -14.71873 -14.35602 -14.19591 -13.89922 -13.56628 -13.10679 -12.57483 -12.23659 -11.81246 -11.66259 -11.20065 -10.83335 -10.74907 -10.19142 -9.82906 -9.60220 -9.21926 -8.57299 -8.55957 -7.62005 -7.33704 -6.02144 -4.07664 0.82438 1.07305 2.57648 3.19461 3.33376 3.38458 3.42478 3.86946 4.18104 4.27469 4.36090 4.44371 4.74704 4.90459 5.30444 5.33264 5.56391 5.92097 6.05110 6.42228 6.49225 6.84084 7.52326 7.73116 7.75222 7.90441 8.10574 8.19051 8.92572 9.04606 9.52029 9.71782 11.08351 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.050915 B = 0.005222 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.800552 B = 5360.561095 C = 5464.245068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.261 3.739 10 N -0.707 5.707 11 C 0.648 3.352 12 O -0.595 6.595 13 N -0.600 5.600 14 C 0.278 3.722 15 C -0.187 4.187 16 C 0.120 3.880 17 N -0.582 5.582 18 H 0.424 0.576 19 C 0.079 3.921 20 C -0.013 4.013 21 F -0.100 7.100 22 H 0.264 0.736 23 H 0.025 0.975 24 H 0.023 0.977 25 H 0.389 0.611 26 H 0.159 0.841 27 H 0.174 0.826 28 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.327 -21.196 -9.579 24.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.139 3.861 10 N -0.356 5.356 11 C 0.347 3.653 12 O -0.475 6.475 13 N -0.334 5.334 14 C 0.110 3.890 15 C -0.214 4.214 16 C -0.010 4.010 17 N -0.188 5.188 18 H 0.260 0.740 19 C -0.052 4.052 20 C -0.042 4.042 21 F -0.078 7.078 22 H 0.074 0.926 23 H 0.043 0.957 24 H 0.041 0.959 25 H 0.221 0.779 26 H 0.176 0.824 27 H 0.191 0.809 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.612 -20.690 -8.704 23.702 hybrid contribution 0.152 1.155 -0.706 1.362 sum 7.764 -19.535 -9.410 23.032 Atomic orbital electron populations 1.69997 1.06074 1.27035 1.49409 1.24953 0.94912 0.99336 0.94934 0.86412 0.79655 0.82710 0.78101 1.20550 1.21048 1.19759 1.21275 0.93295 0.90530 1.52513 0.91977 1.18996 0.88112 0.81519 0.97475 1.45927 1.10858 1.04908 1.73948 1.17305 0.86032 0.83708 0.78254 1.90937 1.16300 1.85441 1.54836 1.68811 1.29739 1.07208 1.27640 1.19147 0.89528 0.91632 0.88645 1.20468 1.05655 0.93448 1.01839 1.21798 0.92444 0.99932 0.86843 1.40650 1.35800 1.19891 1.22437 0.73984 1.21475 0.96198 0.87403 1.00092 1.17945 0.99087 0.88778 0.98370 1.91709 1.71291 1.49288 1.95537 0.92614 0.95714 0.95862 0.77886 0.82371 0.80882 0.80931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.90 13.29 55.43 0.74 -27.16 15 2 C 0.06 1.84 5.46 -17.82 -0.10 1.74 15 3 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 15 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.54 -16.13 9.28 -34.44 -0.32 -16.45 15 8 H 0.06 1.76 7.60 -52.49 -0.40 1.36 15 9 C 0.26 7.91 5.43 -5.19 -0.03 7.88 15 10 N -0.71 -18.76 5.55 -66.76 -0.37 -19.13 15 11 C 0.65 16.99 6.39 -88.32 -0.56 16.42 15 12 O -0.60 -17.57 14.80 4.97 0.07 -17.49 15 13 N -0.60 -13.08 10.53 -14.57 -0.15 -13.23 15 14 C 0.28 4.66 6.55 -84.36 -0.55 4.11 15 15 C -0.19 -1.92 10.00 -39.49 -0.39 -2.32 15 16 C 0.12 0.61 11.17 -17.00 -0.19 0.42 15 17 N -0.58 -2.61 5.24 -12.99 -0.07 -2.68 15 18 H 0.42 -0.04 8.90 -40.82 -0.36 -0.40 15 19 C 0.08 0.70 11.15 -16.87 -0.19 0.51 15 20 C -0.01 -0.20 6.96 -39.36 -0.27 -0.48 15 21 F -0.10 -2.16 13.37 2.25 0.03 -2.13 15 22 H 0.26 7.73 8.31 -40.82 -0.34 7.39 15 23 H 0.02 0.82 8.14 -51.93 -0.42 0.39 15 24 H 0.02 0.77 8.14 -51.93 -0.42 0.35 15 25 H 0.39 9.38 8.42 -40.82 -0.34 9.04 15 26 H 0.16 1.41 8.06 -52.49 -0.42 0.99 15 27 H 0.17 0.01 8.06 -52.48 -0.42 -0.41 15 28 H 0.17 0.99 8.06 -52.49 -0.42 0.57 15 LS Contribution 259.70 15.07 3.91 3.91 Total: -1.00 -42.72 259.70 -5.82 -48.54 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -2.35 Total: 0.30 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: -2.61 Total: 11.84 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: 0.14 Total: -62.21 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.07 Total: -17.49 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.03 Total: -2.13 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -42.72 -5.82 -48.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336454503.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.755 kcal (2) G-P(sol) polarization free energy of solvation -42.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds