Wall clock time and date at job start Sun Mar 29 2020 22:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00288 * 2 1 4 4 H 1.48500 * 109.47374 * 270.00182 * 3 2 1 5 5 H 1.48496 * 109.47056 * 30.00139 * 3 2 1 6 6 H 1.48499 * 109.47408 * 150.00307 * 3 2 1 7 7 C 1.37875 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00687 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99898 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47293 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00173 * 179.97438 * 10 9 7 12 12 O 1.21947 * 119.99700 * 359.97438 * 11 10 9 13 13 N 1.33191 * 120.00142 * 179.97438 * 11 10 9 14 14 C 1.34396 * 120.00164 * 236.34446 * 13 11 10 15 15 C 1.41265 * 120.67271 * 187.62289 * 14 13 11 16 16 C 1.35271 * 119.29101 * 180.02562 * 15 14 13 17 17 N 1.35468 * 120.73436 * 0.02562 * 16 15 14 18 18 H 0.97000 * 119.26984 * 180.02562 * 17 16 15 19 19 C 1.35658 * 121.45142 * 359.97390 * 17 16 15 20 20 C 1.35400 * 120.64306 * 359.76068 * 19 17 16 21 21 F 1.35104 * 120.39179 * 180.28261 * 20 19 17 22 22 H 0.97006 * 119.99566 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47670 * 59.99633 * 9 7 2 24 24 H 1.09006 * 109.46780 * 299.99910 * 9 7 2 25 25 H 0.96997 * 120.00121 * 359.97438 * 10 9 7 26 26 H 1.08001 * 120.35136 * 359.97438 * 15 14 13 27 27 H 1.08003 * 119.62897 * 180.02562 * 16 15 14 28 28 H 1.07995 * 119.68209 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2029 -3.6127 -0.0015 11 6 1.7536 -4.8834 -0.0019 12 8 0.5547 -5.1061 -0.0019 13 7 2.6191 -5.8958 -0.0022 14 6 2.5655 -6.8254 -0.9712 15 6 3.3661 -7.9871 -0.9005 16 6 3.2903 -8.9045 -1.8917 17 7 2.4586 -8.7188 -2.9448 18 1 2.4209 -9.3905 -3.6435 19 6 1.6767 -7.6146 -3.0430 20 6 1.7030 -6.6624 -2.0807 21 9 0.9179 -5.5675 -2.1809 22 1 -0.4850 0.8401 0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6240 -2.5574 0.8881 25 1 3.1566 -3.4355 -0.0010 26 1 4.0322 -8.1407 -0.0644 27 1 3.8997 -9.7949 -1.8430 28 1 1.0236 -7.4958 -3.8950 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336454503.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:00 Heat of formation + Delta-G solvation = -48.498351 kcal Electronic energy + Delta-G solvation = -16429.681638 eV Core-core repulsion = 13394.949502 eV Total energy + Delta-G solvation = -3034.732136 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.081 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.80664 -41.52274 -40.36026 -36.44493 -35.68937 -34.29884 -32.45428 -31.65812 -29.14856 -25.61792 -24.49850 -24.02366 -21.42210 -20.23945 -19.53439 -18.45908 -17.99277 -17.40579 -17.20987 -16.73211 -16.43560 -15.92947 -15.54296 -14.97117 -14.83213 -14.63366 -14.11664 -14.03251 -13.61104 -13.21716 -12.98589 -12.73196 -12.40238 -12.23200 -11.57711 -11.50891 -10.82629 -10.45838 -10.25641 -9.74513 -8.59469 -8.31501 -6.50424 -0.15325 0.17088 1.38056 1.43488 1.55178 1.87903 1.93217 2.30003 2.45761 2.85769 3.01099 3.22874 3.57029 3.86135 4.09657 4.20692 4.69970 4.88720 5.03478 5.18415 5.19935 5.38020 5.51050 5.63423 5.74688 5.83710 6.25341 6.58754 6.73329 7.04970 7.19808 7.87410 8.81406 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.050915 B = 0.005222 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.800552 B = 5360.561095 C = 5464.245068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.996 3.004 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.285 3.715 10 N -0.713 5.713 11 C 0.656 3.344 12 O -0.654 6.654 13 N -0.679 5.679 14 C 0.271 3.729 15 C -0.220 4.220 16 C 0.184 3.816 17 N -0.536 5.536 18 H 0.460 0.540 19 C 0.153 3.847 20 C -0.106 4.106 21 F -0.148 7.148 22 H 0.271 0.729 23 H -0.019 1.019 24 H -0.024 1.024 25 H 0.397 0.603 26 H 0.169 0.831 27 H 0.252 0.748 28 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.116 -24.595 -12.427 29.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.817 3.183 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.598 4.598 8 H 0.096 0.904 9 C 0.161 3.839 10 N -0.364 5.364 11 C 0.357 3.643 12 O -0.538 6.538 13 N -0.422 5.422 14 C 0.115 3.885 15 C -0.246 4.246 16 C 0.051 3.949 17 N -0.140 5.140 18 H 0.304 0.696 19 C 0.018 3.982 20 C -0.135 4.135 21 F -0.127 7.127 22 H 0.080 0.920 23 H -0.001 1.001 24 H -0.006 1.006 25 H 0.231 0.769 26 H 0.187 0.813 27 H 0.268 0.732 28 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 10.465 -24.269 -11.657 28.886 hybrid contribution -0.682 1.592 -0.167 1.740 sum 9.783 -22.677 -11.824 27.382 Atomic orbital electron populations 1.70174 1.08421 1.28740 1.49642 1.26211 0.95957 1.04171 0.93439 0.85011 0.78255 0.76092 0.78904 1.19004 1.20174 1.18154 1.21583 0.94063 0.90580 1.53573 0.90393 1.18389 0.88281 0.84035 0.93196 1.45708 1.10390 1.04872 1.75408 1.17721 0.85897 0.84264 0.76374 1.90823 1.19241 1.86116 1.57612 1.68638 1.33415 1.09028 1.31133 1.20070 0.89179 0.91785 0.87446 1.20771 1.06389 0.92547 1.04900 1.22880 0.89275 0.99457 0.83303 1.41186 1.32020 1.18302 1.22528 0.69635 1.21951 0.93343 0.85138 0.97762 1.18506 1.02309 0.90834 1.01869 1.91577 1.73027 1.52147 1.95998 0.92021 1.00080 1.00610 0.76888 0.81305 0.73205 0.76676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.58 13.29 21.45 0.28 -61.30 15 2 C 0.00 0.09 5.46 84.65 0.46 0.55 15 3 Si 1.00 46.57 29.54 68.60 2.03 48.60 15 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 15 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 15 6 H -0.26 -11.37 7.11 99.48 0.71 -10.66 15 7 C -0.56 -35.61 9.28 25.60 0.24 -35.37 15 8 H 0.08 4.59 7.60 -2.91 -0.02 4.56 15 9 C 0.28 19.12 5.43 85.63 0.46 19.59 15 10 N -0.71 -42.03 5.55 -483.23 -2.68 -44.72 15 11 C 0.66 38.34 6.39 179.55 1.15 39.48 15 12 O -0.65 -43.15 14.80 -5.14 -0.08 -43.23 15 13 N -0.68 -32.41 10.53 -319.01 -3.36 -35.77 15 14 C 0.27 9.36 6.55 40.29 0.26 9.63 15 15 C -0.22 -3.84 10.00 22.33 0.22 -3.62 15 16 C 0.18 0.40 11.17 83.45 0.93 1.33 15 17 N -0.54 -0.44 5.24 -195.01 -1.02 -1.46 15 18 H 0.46 -4.83 8.90 -92.71 -0.82 -5.65 15 19 C 0.15 2.00 11.15 83.45 0.93 2.93 15 20 C -0.11 -3.45 6.96 22.41 0.16 -3.29 15 21 F -0.15 -7.04 13.37 44.97 0.60 -6.44 15 22 H 0.27 16.44 8.31 -92.70 -0.77 15.67 15 23 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 15 24 H -0.02 -1.79 8.14 -2.38 -0.02 -1.81 15 25 H 0.40 21.13 8.42 -92.71 -0.78 20.35 15 26 H 0.17 2.60 8.06 -2.91 -0.02 2.57 15 27 H 0.25 -2.87 8.06 -2.91 -0.02 -2.89 15 28 H 0.22 1.18 8.06 -2.91 -0.02 1.15 15 Total: -1.00 -114.21 259.70 0.20 -114.01 By element: Atomic # 1 Polarization: -0.53 SS G_CDS: -0.39 Total: -0.92 kcal Atomic # 6 Polarization: 26.41 SS G_CDS: 4.82 Total: 31.23 kcal Atomic # 7 Polarization: -136.47 SS G_CDS: -6.78 Total: -143.25 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.08 Total: -43.23 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 0.60 Total: -6.44 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -114.21 0.20 -114.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336454503.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.516 kcal (2) G-P(sol) polarization free energy of solvation -114.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -114.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds