Wall clock time and date at job start Sun Mar 29 2020 22:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86792 * 120.00330 * 2 1 4 4 H 1.48503 * 109.47209 * 269.99880 * 3 2 1 5 5 H 1.48505 * 109.47294 * 29.99761 * 3 2 1 6 6 H 1.48496 * 109.47511 * 149.99496 * 3 2 1 7 7 C 1.38813 * 119.99447 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99343 * 163.07945 * 7 2 1 9 9 N 1.36935 * 120.00558 * 343.07479 * 7 2 1 10 10 C 1.46926 * 120.62961 * 151.83993 * 9 7 2 11 11 C 1.53194 * 108.77075 * 126.37226 * 10 9 7 12 12 C 1.53045 * 109.31158 * 54.63706 * 11 10 9 13 13 C 1.53038 * 109.53899 * 298.63382 * 12 11 10 14 14 O 1.42897 * 109.49529 * 301.41312 * 13 12 11 15 15 C 1.53002 * 109.49845 * 181.31722 * 13 12 11 16 16 F 1.39904 * 109.46860 * 300.16083 * 15 13 12 17 17 F 1.39898 * 109.47102 * 60.15996 * 15 13 12 18 18 F 1.39902 * 109.47235 * 180.16226 * 15 13 12 19 19 C 1.46929 * 120.63129 * 331.82944 * 9 7 2 20 20 H 0.96997 * 119.99477 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.58692 * 6.59346 * 10 9 7 22 22 H 1.08994 * 109.70615 * 246.22671 * 10 9 7 23 23 H 1.08998 * 109.50154 * 294.68732 * 11 10 9 24 24 H 1.09000 * 109.49553 * 174.58542 * 11 10 9 25 25 H 1.09004 * 109.46029 * 178.61028 * 12 11 10 26 26 H 1.09004 * 109.44943 * 58.64599 * 12 11 10 27 27 H 0.96702 * 113.99982 * 179.83542 * 14 13 12 28 28 H 1.08995 * 109.59114 * 113.83691 * 19 9 7 29 29 H 1.09006 * 109.58537 * 353.40864 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2226 -0.2717 9 7 1.3700 -2.3623 0.3463 10 6 1.8140 -3.6530 -0.1975 11 6 2.0683 -4.6168 0.9658 12 6 0.8132 -4.7002 1.8375 13 6 0.4983 -3.3184 2.4151 14 8 1.6124 -2.8569 3.1818 15 6 -0.7374 -3.4096 3.3127 16 9 -1.8269 -3.8633 2.5614 17 9 -0.4884 -4.3033 4.3597 18 9 -1.0269 -2.1454 3.8374 19 6 0.2262 -2.3400 1.2683 20 1 -0.4849 0.8401 -0.0004 21 1 2.7346 -3.5135 -0.7643 22 1 1.0421 -4.0624 -0.8491 23 1 2.9033 -4.2525 1.5643 24 1 2.3053 -5.6058 0.5736 25 1 0.9830 -5.4043 2.6522 26 1 -0.0270 -5.0409 1.2324 27 1 1.4834 -1.9836 3.5766 28 1 -0.6769 -2.6410 0.7375 29 1 0.0992 -1.3341 1.6686 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336632169.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:59 Heat of formation + Delta-G solvation = -206.140777 kcal Electronic energy + Delta-G solvation = -18823.091503 eV Core-core repulsion = 15330.834292 eV Total energy + Delta-G solvation = -3492.257211 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -51.15374 -48.66537 -48.61363 -40.06794 -36.76077 -34.72681 -32.23155 -31.52974 -27.40501 -26.88242 -24.13334 -23.03050 -21.03594 -19.81776 -19.33773 -19.30831 -18.37609 -17.33822 -16.34351 -16.04545 -15.60604 -15.48094 -15.40889 -15.08086 -14.89483 -14.81221 -14.79395 -14.58905 -14.37017 -13.80853 -13.64995 -13.06786 -12.66562 -12.59223 -12.42897 -12.09276 -11.76669 -11.69577 -11.43236 -11.08625 -10.60973 -8.72740 -7.92045 -5.37010 1.46710 1.50178 1.59353 1.66991 2.48469 2.69077 2.77001 2.97240 3.27541 3.41238 3.69523 3.87531 3.95491 4.23257 4.35237 4.68973 4.85898 4.92465 5.04153 5.10953 5.17054 5.35671 5.57419 5.63320 6.32902 6.45797 7.07789 7.77145 8.29788 9.14661 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.028913 B = 0.010483 C = 0.008980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.205709 B = 2670.291739 C = 3117.382056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.047 4.047 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.259 4.259 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.133 3.867 11 C -0.115 4.115 12 C -0.101 4.101 13 C 0.080 3.920 14 O -0.527 6.527 15 C 0.427 3.573 16 F -0.182 7.182 17 F -0.179 7.179 18 F -0.189 7.189 19 C 0.161 3.839 20 H 0.252 0.748 21 H 0.060 0.940 22 H 0.024 0.976 23 H 0.060 0.940 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.386 0.614 28 H 0.019 0.981 29 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.601 -8.126 5.590 9.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.242 4.242 3 Si 0.794 3.206 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.389 4.389 8 H 0.086 0.914 9 N -0.317 5.317 10 C 0.008 3.992 11 C -0.153 4.153 12 C -0.139 4.139 13 C 0.035 3.965 14 O -0.333 6.333 15 C 0.371 3.629 16 F -0.164 7.164 17 F -0.161 7.161 18 F -0.171 7.171 19 C 0.034 3.966 20 H 0.061 0.939 21 H 0.079 0.921 22 H 0.042 0.958 23 H 0.079 0.921 24 H 0.114 0.886 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.236 0.764 28 H 0.037 0.963 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.752 -8.561 5.396 10.147 hybrid contribution -0.490 1.685 0.313 1.783 sum 0.262 -6.875 5.708 8.940 Atomic orbital electron populations 1.70140 1.06584 1.26117 1.55081 1.25772 0.95995 1.01447 1.01001 0.85305 0.78141 0.79576 0.77590 1.21197 1.21914 1.19513 1.19447 0.92918 0.85692 1.40875 0.91399 1.43995 1.35571 1.02985 1.49159 1.21220 0.97919 0.85621 0.94398 1.21810 0.96542 1.00212 0.96774 1.21537 1.00742 0.91304 1.00269 1.23247 0.82472 1.00799 0.90025 1.86528 1.38127 1.39594 1.69091 1.21838 0.87166 0.73299 0.80554 1.93144 1.57956 1.89097 1.76179 1.93148 1.94201 1.68574 1.60141 1.93148 1.94498 1.41581 1.87841 1.21117 0.89788 0.97143 0.88590 0.93899 0.92121 0.95845 0.92130 0.88595 0.89512 0.89495 0.76450 0.96333 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.41 11.20 21.65 0.24 -53.17 15 2 C -0.05 -2.51 4.92 84.86 0.42 -2.09 15 3 Si 0.97 43.60 29.59 68.60 2.03 45.63 15 4 H -0.29 -12.76 7.11 99.48 0.71 -12.05 15 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 15 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 7 C -0.26 -13.76 9.58 84.03 0.81 -12.95 15 8 H 0.07 3.53 7.89 -2.91 -0.02 3.51 15 9 N -0.60 -28.66 2.93 -699.09 -2.05 -30.71 15 10 C 0.13 5.23 6.52 86.36 0.56 5.79 15 11 C -0.11 -3.63 5.94 30.67 0.18 -3.45 15 12 C -0.10 -3.19 4.67 30.62 0.14 -3.05 15 13 C 0.08 2.94 0.51 -10.72 -0.01 2.94 15 14 O -0.53 -19.23 12.12 -148.98 -1.81 -21.04 15 15 C 0.43 14.81 2.38 71.98 0.17 14.98 15 16 F -0.18 -6.39 16.22 44.97 0.73 -5.66 15 17 F -0.18 -5.74 16.72 44.97 0.75 -4.99 15 18 F -0.19 -6.88 16.54 44.97 0.74 -6.13 15 19 C 0.16 7.41 3.98 86.36 0.34 7.75 15 20 H 0.25 14.04 8.31 -92.71 -0.77 13.27 15 21 H 0.06 2.32 7.93 -2.39 -0.02 2.30 15 22 H 0.02 0.91 8.14 -2.39 -0.02 0.89 15 23 H 0.06 2.08 7.61 -2.39 -0.02 2.07 15 24 H 0.10 2.34 8.14 -2.39 -0.02 2.32 15 25 H 0.09 2.41 7.77 -2.38 -0.02 2.39 15 26 H 0.09 2.61 7.84 -2.39 -0.02 2.59 15 27 H 0.39 12.80 8.70 -74.06 -0.64 12.15 15 28 H 0.02 0.92 7.67 -2.39 -0.02 0.90 15 29 H 0.07 3.74 5.89 -2.38 -0.01 3.73 15 Total: -1.00 -59.48 251.02 3.80 -55.68 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.54 Total: 10.47 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 2.62 Total: 9.92 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -1.81 Total: -83.88 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -1.81 Total: -21.04 kcal Atomic # 9 Polarization: -19.01 SS G_CDS: 2.23 Total: -16.78 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -59.48 3.80 -55.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336632169.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.456 kcal (2) G-P(sol) polarization free energy of solvation -59.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds