Wall clock time and date at job start Sun Mar 29 2020 22:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.31755 * 120.00260 * 119.99532 * 11 10 9 13 13 N 1.34730 * 127.90001 * 179.70250 * 12 11 10 14 14 C 1.28439 * 116.90735 * 179.84136 * 13 12 11 15 15 C 1.50705 * 120.47871 * 180.22463 * 14 13 12 16 16 C 1.52991 * 117.49824 * 163.88691 * 15 14 13 17 17 C 1.53000 * 60.00407 * 252.51391 * 16 15 14 18 18 N 1.33789 * 119.05311 * 0.49319 * 14 13 12 19 19 H 0.96996 * 127.12179 * 179.71899 * 18 14 13 20 20 S 1.70109 * 105.76265 * 359.73234 * 18 14 13 21 21 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 24 24 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 25 25 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 26 26 H 1.09003 * 115.54478 * 309.60246 * 15 14 13 27 27 H 1.08998 * 117.50406 * 0.02562 * 16 15 14 28 28 H 1.09010 * 117.49448 * 145.02524 * 16 15 14 29 29 H 1.08995 * 117.49910 * 252.52104 * 17 16 15 30 30 H 1.08995 * 117.51519 * 107.47712 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 1.6779 -5.7863 -0.9895 13 7 1.0951 -6.9907 -1.1476 14 6 1.4087 -7.6543 -2.2016 15 6 0.8005 -9.0084 -2.4615 16 6 0.9111 -9.5722 -3.8794 17 6 -0.4364 -9.0666 -3.3603 18 7 2.2872 -7.1286 -3.0629 19 1 2.6083 -7.5262 -3.8873 20 16 2.7248 -5.6188 -2.4129 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5568 -0.8902 23 1 0.6248 -2.5571 0.8897 24 1 2.8721 -3.6043 -0.8905 25 1 2.8721 -3.6042 0.8895 26 1 0.8542 -9.7147 -1.6329 27 1 1.4242 -8.9640 -4.6243 28 1 1.0379 -10.6498 -3.9841 29 1 -1.1960 -9.8114 -3.1233 30 1 -0.8102 -8.1254 -3.7634 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336670992.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:29 Heat of formation + Delta-G solvation = 83.565186 kcal Electronic energy + Delta-G solvation = -13987.810225 eV Core-core repulsion = 11525.017969 eV Total energy + Delta-G solvation = -2462.792256 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.35026 -37.04956 -35.46939 -33.23030 -32.12516 -29.42703 -26.19577 -24.31305 -22.86802 -21.50266 -20.68297 -20.21642 -18.84958 -17.17892 -16.43898 -16.06512 -15.19603 -14.72792 -14.48816 -14.38935 -13.38242 -12.89358 -12.36853 -12.04761 -11.84059 -11.63259 -11.26722 -11.07388 -11.00471 -10.95149 -10.61079 -10.52416 -9.97753 -9.75194 -9.22638 -9.18872 -8.54340 -8.34346 -7.18326 -5.99722 -4.04011 0.85062 1.15892 1.84728 3.03981 3.25018 3.33213 3.39052 3.42853 3.63563 4.27849 4.31357 4.42493 4.48583 4.62810 4.84205 5.15039 5.35777 5.41545 5.55275 5.65404 5.92006 6.14640 6.42564 6.73441 6.82107 7.53766 7.67169 7.78869 7.97457 8.26866 8.39128 9.02004 9.59748 11.11521 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.052119 B = 0.004535 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.104638 B = 6173.200326 C = 6300.430111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.033 3.967 10 C 0.060 3.940 11 N -0.462 5.462 12 C 0.330 3.670 13 N -0.519 5.519 14 C 0.421 3.579 15 C -0.101 4.101 16 C -0.172 4.172 17 C -0.148 4.148 18 N -0.693 5.693 19 H 0.440 0.560 20 S 0.060 5.940 21 H 0.262 0.738 22 H 0.018 0.982 23 H 0.030 0.970 24 H 0.036 0.964 25 H 0.085 0.915 26 H 0.143 0.857 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.455 -19.680 -9.947 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.076 0.924 9 C -0.004 4.004 10 C -0.070 4.070 11 N -0.185 5.185 12 C -0.061 4.061 13 N -0.250 5.250 14 C 0.137 3.863 15 C -0.124 4.124 16 C -0.210 4.210 17 C -0.186 4.186 18 N -0.425 5.425 19 H 0.284 0.716 20 S 0.180 5.820 21 H 0.071 0.929 22 H 0.036 0.964 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.103 0.897 26 H 0.160 0.840 27 H 0.114 0.886 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.179 -18.624 -8.902 20.885 hybrid contribution 0.807 0.440 -1.042 1.389 sum 3.986 -18.184 -9.944 21.105 Atomic orbital electron populations 1.69987 1.06097 1.26748 1.50164 1.25004 0.94859 0.99282 0.95090 0.86531 0.79814 0.83181 0.78117 1.20611 1.21121 1.19758 1.21123 0.93050 0.90607 1.51570 0.92442 1.19092 0.93662 0.89324 0.98362 1.22670 0.96991 0.87188 1.00173 1.72003 1.23590 1.04890 1.18021 1.26241 0.94081 0.93610 0.92146 1.67718 1.30376 1.07222 1.19668 1.21993 0.86022 0.94372 0.83928 1.20771 1.03764 0.91437 0.96465 1.23101 1.01145 1.02149 0.94607 1.23060 0.90987 1.03904 1.00671 1.47067 1.46179 1.21284 1.27965 0.71617 1.86262 1.57463 1.08133 1.30103 0.92861 0.96387 0.95193 0.94557 0.89695 0.83960 0.88630 0.87074 0.87031 0.87980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.57 13.29 55.43 0.74 -26.84 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -15.34 9.11 -34.44 -0.31 -15.65 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.03 0.94 5.30 -27.88 -0.15 0.79 16 10 C 0.06 1.42 6.32 -4.04 -0.03 1.39 16 11 N -0.46 -10.67 10.69 -61.03 -0.65 -11.32 16 12 C 0.33 6.65 8.61 -89.60 -0.77 5.88 16 13 N -0.52 -9.21 10.58 -11.65 -0.12 -9.33 16 14 C 0.42 5.45 7.18 -158.23 -1.14 4.31 16 15 C -0.10 -0.85 6.26 -91.77 -0.57 -1.42 16 16 C -0.17 -0.89 9.97 -26.74 -0.27 -1.16 16 17 C -0.15 -1.01 10.23 -26.73 -0.27 -1.29 16 18 N -0.69 -8.02 6.56 31.50 0.21 -7.81 16 19 H 0.44 3.34 7.54 -40.82 -0.31 3.04 16 20 S 0.06 0.98 22.44 -107.50 -2.41 -1.44 16 21 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 22 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.04 0.82 6.46 -51.93 -0.34 0.48 16 25 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 26 H 0.14 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.10 0.42 6.87 -51.93 -0.36 0.07 16 28 H 0.11 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 276.76 15.07 4.17 4.17 Total: -1.00 -34.61 276.76 -10.20 -44.81 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: -3.50 Total: -3.72 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -3.61 Total: -5.49 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.17 Total: -55.30 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.41 Total: -1.44 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -34.61 -10.20 -44.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336670992.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.379 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds