Wall clock time and date at job start Sun Mar 29 2020 22:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.31755 * 120.00260 * 119.99532 * 11 10 9 13 13 N 1.34730 * 127.90001 * 179.70250 * 12 11 10 14 14 C 1.28439 * 116.90735 * 179.84136 * 13 12 11 15 15 C 1.50705 * 120.47871 * 180.22463 * 14 13 12 16 16 C 1.52991 * 117.49824 * 163.88691 * 15 14 13 17 17 C 1.53000 * 60.00407 * 252.51391 * 16 15 14 18 18 N 1.33789 * 119.05311 * 0.49319 * 14 13 12 19 19 H 0.96996 * 127.12179 * 179.71899 * 18 14 13 20 20 S 1.70109 * 105.76265 * 359.73234 * 18 14 13 21 21 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 24 24 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 25 25 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 26 26 H 1.09003 * 115.54478 * 309.60246 * 15 14 13 27 27 H 1.08998 * 117.50406 * 0.02562 * 16 15 14 28 28 H 1.09010 * 117.49448 * 145.02524 * 16 15 14 29 29 H 1.08995 * 117.49910 * 252.52104 * 17 16 15 30 30 H 1.08995 * 117.51519 * 107.47712 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 1.6779 -5.7863 -0.9895 13 7 1.0951 -6.9907 -1.1476 14 6 1.4087 -7.6543 -2.2016 15 6 0.8005 -9.0084 -2.4615 16 6 0.9111 -9.5722 -3.8794 17 6 -0.4364 -9.0666 -3.3603 18 7 2.2872 -7.1286 -3.0629 19 1 2.6083 -7.5262 -3.8873 20 16 2.7248 -5.6188 -2.4129 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5568 -0.8902 23 1 0.6248 -2.5571 0.8897 24 1 2.8721 -3.6043 -0.8905 25 1 2.8721 -3.6042 0.8895 26 1 0.8542 -9.7147 -1.6329 27 1 1.4242 -8.9640 -4.6243 28 1 1.0379 -10.6498 -3.9841 29 1 -1.1960 -9.8114 -3.1233 30 1 -0.8102 -8.1254 -3.7634 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336670992.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:29 Heat of formation + Delta-G solvation = 59.109794 kcal Electronic energy + Delta-G solvation = -13988.870690 eV Core-core repulsion = 11525.017969 eV Total energy + Delta-G solvation = -2463.852721 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.47898 -38.01224 -36.95110 -35.15614 -33.68929 -31.35127 -27.64292 -26.00149 -23.40596 -23.13032 -22.08524 -21.44890 -20.12103 -18.66278 -18.26706 -17.00468 -16.56575 -16.36204 -16.31674 -15.32303 -15.16237 -14.34062 -13.81985 -13.74900 -13.16943 -12.85685 -12.73846 -12.46142 -12.41197 -12.27749 -11.82013 -11.72485 -11.61145 -11.52727 -11.40228 -10.62825 -10.57283 -10.05469 -8.65068 -8.23635 -6.38946 -0.38956 -0.11758 0.38365 1.39757 1.42942 1.54403 1.76666 2.25601 2.41191 2.82021 3.08629 3.28927 3.46531 3.73843 3.94871 4.16447 4.23119 4.51572 4.58821 4.74477 4.81319 4.97670 5.05621 5.19522 5.35762 5.45728 5.71812 5.81981 6.09775 6.23417 6.74842 6.87021 7.31195 8.88654 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.052119 B = 0.004535 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.104638 B = 6173.200326 C = 6300.430111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.069 0.931 9 C 0.043 3.957 10 C 0.080 3.920 11 N -0.528 5.528 12 C 0.335 3.665 13 N -0.566 5.566 14 C 0.439 3.561 15 C -0.125 4.125 16 C -0.139 4.139 17 C -0.151 4.151 18 N -0.663 5.663 19 H 0.462 0.538 20 S 0.066 5.934 21 H 0.266 0.734 22 H -0.017 1.017 23 H -0.006 1.006 24 H 0.043 0.957 25 H 0.085 0.915 26 H 0.156 0.844 27 H 0.107 0.893 28 H 0.140 0.860 29 H 0.130 0.870 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.882 -21.255 -12.051 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.586 4.586 8 H 0.087 0.913 9 C 0.005 3.995 10 C -0.050 4.050 11 N -0.254 5.254 12 C -0.055 4.055 13 N -0.300 5.300 14 C 0.156 3.844 15 C -0.148 4.148 16 C -0.177 4.177 17 C -0.190 4.190 18 N -0.397 5.397 19 H 0.311 0.689 20 S 0.188 5.812 21 H 0.075 0.925 22 H 0.002 0.998 23 H 0.012 0.988 24 H 0.061 0.939 25 H 0.103 0.897 26 H 0.173 0.827 27 H 0.125 0.875 28 H 0.158 0.842 29 H 0.148 0.852 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.653 -20.256 -11.097 23.561 hybrid contribution 0.322 0.665 -0.604 0.955 sum 4.976 -19.590 -11.701 23.355 Atomic orbital electron populations 1.70144 1.08175 1.28132 1.50880 1.26093 0.95809 1.03777 0.94102 0.85273 0.78585 0.77406 0.78723 1.19386 1.20545 1.18282 1.21536 0.93778 0.91398 1.51846 0.91271 1.18871 0.93908 0.91832 0.94901 1.22196 0.95608 0.86690 1.00530 1.71965 1.26777 1.05606 1.21098 1.26578 0.93238 0.93666 0.92014 1.67770 1.32554 1.07118 1.22534 1.22780 0.84303 0.95102 0.82172 1.21034 1.05590 0.89083 0.99119 1.23321 0.98766 1.03913 0.91667 1.23183 0.91866 1.03977 0.99991 1.47106 1.45010 1.19174 1.28379 0.68876 1.86184 1.56009 1.10479 1.28539 0.92515 0.99823 0.98780 0.93917 0.89668 0.82686 0.87516 0.84162 0.85160 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.59 13.29 21.45 0.28 -59.30 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.98 45.35 29.54 68.60 2.03 47.37 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.55 -32.92 9.11 25.60 0.23 -32.69 16 8 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 9 C 0.04 2.55 5.30 29.85 0.16 2.71 16 10 C 0.08 3.99 6.32 86.38 0.55 4.54 16 11 N -0.53 -25.69 10.69 -346.99 -3.71 -29.40 16 12 C 0.34 13.83 8.61 179.99 1.55 15.38 16 13 N -0.57 -20.10 10.58 -190.78 -2.02 -22.12 16 14 C 0.44 10.58 7.18 139.12 1.00 11.58 16 15 C -0.13 -1.72 6.26 -11.54 -0.07 -1.79 16 16 C -0.14 -0.78 9.97 30.59 0.31 -0.48 16 17 C -0.15 -1.61 10.23 30.60 0.31 -1.30 16 18 N -0.66 -13.65 6.56 -54.26 -0.36 -14.01 16 19 H 0.46 5.21 7.54 -92.71 -0.70 4.51 16 20 S 0.07 2.08 22.44 -56.49 -1.27 0.82 16 21 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 22 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 23 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 24 H 0.04 1.99 6.46 -2.39 -0.02 1.98 16 25 H 0.09 4.06 8.14 -2.39 -0.02 4.04 16 26 H 0.16 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.11 0.38 6.87 -2.39 -0.02 0.37 16 28 H 0.14 0.11 8.14 -2.38 -0.02 0.09 16 29 H 0.13 0.92 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -79.68 276.76 -0.08 -79.77 By element: Atomic # 1 Polarization: -2.03 SS G_CDS: 0.46 Total: -1.56 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 4.49 Total: -1.56 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -5.80 Total: -124.82 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.27 Total: 0.82 kcal Total: -79.68 -0.08 -79.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336670992.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.876 kcal (2) G-P(sol) polarization free energy of solvation -79.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds