Wall clock time and date at job start Sun Mar 29 2020 21:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.33223 * 119.99871 * 2 1 4 4 H 1.08008 * 120.00231 * 154.94687 * 3 2 1 5 5 C 1.46791 * 120.00537 * 334.94734 * 3 2 1 6 6 N 1.29316 * 119.99547 * 54.57533 * 5 3 2 7 7 Si 1.86791 * 120.00416 * 234.57934 * 5 3 2 8 8 H 1.48504 * 109.47412 * 89.99611 * 7 5 3 9 9 H 1.48497 * 109.47481 * 209.99767 * 7 5 3 10 10 H 1.48506 * 109.47046 * 329.99714 * 7 5 3 11 11 C 1.34780 * 120.00215 * 180.02562 * 2 1 3 12 12 O 1.21642 * 120.00185 * 180.96958 * 11 2 1 13 13 C 1.46415 * 119.99843 * 0.96417 * 11 2 1 14 14 C 1.38146 * 126.27226 * 155.87514 * 13 11 2 15 15 C 1.39717 * 106.96588 * 179.74409 * 14 13 11 16 16 N 1.48013 * 126.07492 * 180.26227 * 15 14 13 17 17 O 1.31701 * 119.99887 * 0.02562 * 16 15 14 18 18 O 1.31701 * 119.99679 * 179.97438 * 16 15 14 19 19 C 1.35576 * 107.85292 * 0.22674 * 15 14 13 20 20 N 1.34957 * 108.99604 * 0.02562 * 19 15 14 21 21 H 0.96999 * 125.63485 * 180.02562 * 20 19 15 22 22 H 1.09007 * 109.47079 * 246.75699 * 1 2 3 23 23 H 1.08995 * 109.47399 * 6.75850 * 1 2 3 24 24 H 1.08996 * 109.47631 * 126.76073 * 1 2 3 25 25 H 0.97004 * 120.00124 * 180.02562 * 6 5 3 26 26 H 1.07997 * 126.51145 * 0.02562 * 14 13 11 27 27 H 1.07994 * 125.49840 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1310 1.1538 0.0000 4 1 3.1349 1.1978 0.3961 5 6 1.5007 2.3653 -0.5383 6 7 0.3527 2.7522 -0.0860 7 14 2.3568 3.3478 -1.8765 8 1 1.9397 2.8392 -3.2079 9 1 1.9837 4.7800 -1.7547 10 1 3.8279 3.2055 -1.7308 11 6 2.1389 -1.1672 -0.0005 12 8 3.3552 -1.1673 0.0173 13 6 1.4070 -2.4351 -0.0224 14 6 1.8853 -3.6471 -0.4815 15 6 0.8604 -4.5811 -0.3104 16 7 0.9237 -6.0182 -0.6590 17 8 2.0228 -6.5211 -1.1821 18 8 -0.1188 -6.7941 -0.4451 19 6 -0.2023 -3.9374 0.2323 20 7 0.1146 -2.6373 0.4081 21 1 -0.4698 -1.9586 0.7804 22 1 -0.3633 -0.4056 0.9443 23 1 -0.3634 1.0205 -0.1209 24 1 -0.3634 -0.6150 -0.8232 25 1 -0.0641 3.5526 -0.4420 26 1 2.8667 -3.8374 -0.8902 27 1 -1.1493 -4.3916 0.4835 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337536642.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:48 Heat of formation + Delta-G solvation = 46.013603 kcal Electronic energy + Delta-G solvation = -16506.321279 eV Core-core repulsion = 13463.314699 eV Total energy + Delta-G solvation = -3043.006580 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.08656 -40.19319 -39.46151 -36.93435 -35.41000 -34.59853 -32.99777 -31.08386 -28.69408 -27.42694 -26.54696 -23.55261 -22.07984 -21.55029 -19.91397 -19.03718 -18.95585 -17.73107 -17.32941 -17.11391 -16.57859 -16.33821 -16.15332 -15.21377 -14.95545 -14.60035 -14.05612 -13.99494 -13.67678 -13.60135 -12.65253 -12.48692 -12.47010 -12.22628 -12.08771 -11.82603 -10.87941 -10.85808 -10.69588 -10.21845 -9.84666 -9.08202 -5.74151 -1.48465 0.11018 0.25354 1.08441 1.22908 1.40669 1.45721 1.70128 2.12652 2.16821 2.56912 2.93243 3.39513 3.57958 3.79827 4.09488 4.24133 4.33578 4.47257 4.62667 4.78750 5.00587 5.17693 5.31356 5.73515 5.89200 6.01022 6.20294 7.01721 7.22415 7.91819 8.02855 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.047403 B = 0.005804 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.535764 B = 4822.978039 C = 5125.976600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.392 5.392 3 C -0.454 4.454 4 H 0.072 0.928 5 C 0.081 3.919 6 N -0.757 5.757 7 Si 0.947 3.053 8 H -0.264 1.264 9 H -0.256 1.256 10 H -0.278 1.278 11 C 0.434 3.566 12 O -0.637 6.637 13 C 0.019 3.981 14 C -0.110 4.110 15 C -0.109 4.109 16 N 0.033 4.967 17 O -0.263 6.263 18 O -0.172 6.172 19 C 0.159 3.841 20 N -0.495 5.495 21 H 0.450 0.550 22 H 0.067 0.933 23 H 0.126 0.874 24 H 0.065 0.935 25 H 0.306 0.694 26 H 0.149 0.851 27 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.701 -2.435 0.458 10.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.103 5.103 3 C -0.578 4.578 4 H 0.090 0.910 5 C -0.144 4.144 6 N -0.382 5.382 7 Si 0.768 3.232 8 H -0.189 1.189 9 H -0.180 1.180 10 H -0.203 1.203 11 C 0.227 3.773 12 O -0.529 6.529 13 C -0.094 4.094 14 C -0.135 4.135 15 C -0.206 4.206 16 N 0.499 4.501 17 O -0.434 6.434 18 O -0.369 6.369 19 C 0.012 3.988 20 N -0.100 5.100 21 H 0.300 0.700 22 H 0.085 0.915 23 H 0.144 0.856 24 H 0.084 0.916 25 H 0.120 0.880 26 H 0.167 0.833 27 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -10.318 -1.470 0.657 10.443 hybrid contribution 0.626 0.220 -0.405 0.778 sum -9.692 -1.250 0.252 9.775 Atomic orbital electron populations 1.23035 0.80563 1.08538 0.99922 1.42406 1.06359 1.04590 1.56963 1.19726 1.01207 0.86466 1.50443 0.91016 1.27500 0.94681 0.96556 0.95614 1.68948 1.17671 1.20908 1.30696 0.85747 0.80255 0.77415 0.79758 1.18857 1.18031 1.20322 1.16716 0.86707 0.82131 0.91703 1.90610 1.14654 1.86161 1.61448 1.20495 0.85707 0.95233 1.07934 1.20893 0.99849 0.89299 1.03442 1.19439 1.00897 0.78815 1.21489 1.49618 1.01232 1.03465 0.95807 1.96306 1.17092 1.79799 1.50165 1.96186 1.23470 1.58501 1.58791 1.22464 0.99571 0.82549 0.94212 1.42941 1.11994 1.09876 1.45192 0.69965 0.91548 0.85638 0.91603 0.87999 0.83348 0.72852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 8.59 127.77 1.10 1.83 15 2 N -0.39 -18.10 2.93 -658.85 -1.93 -20.03 15 3 C -0.45 -23.57 9.34 86.72 0.81 -22.76 15 4 H 0.07 4.28 7.58 -2.91 -0.02 4.26 15 5 C 0.08 3.61 5.09 87.30 0.44 4.05 15 6 N -0.76 -30.76 11.04 23.26 0.26 -30.50 15 7 Si 0.95 35.64 29.72 68.60 2.04 37.68 15 8 H -0.26 -9.79 7.11 99.48 0.71 -9.09 15 9 H -0.26 -8.56 7.11 99.48 0.71 -7.86 15 10 H -0.28 -11.56 7.11 99.48 0.71 -10.85 15 11 C 0.43 20.85 7.54 86.37 0.65 21.50 15 12 O -0.64 -37.17 16.63 -4.16 -0.07 -37.23 15 13 C 0.02 0.70 6.47 40.33 0.26 0.96 15 14 C -0.11 -4.02 10.50 22.61 0.24 -3.78 15 15 C -0.11 -3.33 7.17 36.12 0.26 -3.07 15 16 N 0.03 1.14 4.98 -47.08 -0.23 0.90 15 17 O -0.26 -10.55 19.78 3.51 0.07 -10.48 15 18 O -0.17 -5.46 19.76 3.51 0.07 -5.39 15 19 C 0.16 3.19 11.58 83.60 0.97 4.16 15 20 N -0.49 -11.60 5.12 -183.94 -0.94 -12.54 15 21 H 0.45 7.90 5.44 -92.71 -0.50 7.39 15 22 H 0.07 1.74 6.15 -2.38 -0.01 1.73 15 23 H 0.13 4.61 4.50 -2.39 -0.01 4.60 15 24 H 0.07 1.87 7.36 -2.39 -0.02 1.85 15 25 H 0.31 10.79 8.26 -92.71 -0.77 10.02 15 26 H 0.15 5.93 8.06 -2.91 -0.02 5.90 15 27 H 0.26 2.14 8.06 -2.91 -0.02 2.12 15 Total: -1.00 -69.36 252.98 4.73 -64.63 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.74 Total: 10.07 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 4.73 Total: 2.89 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -2.85 Total: -62.17 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: 0.07 Total: -53.10 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 2.04 Total: 37.68 kcal Total: -69.36 4.73 -64.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337536642.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.642 kcal (2) G-P(sol) polarization free energy of solvation -69.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds