Wall clock time and date at job start Sun Mar 29 2020 22:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47000 * 2 1 4 4 N 1.46497 * 109.47372 * 119.99946 * 2 1 3 5 5 C 1.36844 * 120.00036 * 294.75473 * 4 2 1 6 6 H 1.08002 * 119.99927 * 50.44817 * 5 4 2 7 7 C 1.38785 * 119.99944 * 230.44198 * 5 4 2 8 8 N 1.31599 * 119.99738 * 5.85949 * 7 5 4 9 9 Si 1.86804 * 119.99952 * 185.85230 * 7 5 4 10 10 H 1.48500 * 109.46755 * 60.00332 * 9 7 5 11 11 H 1.48498 * 109.46957 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47149 * 300.00251 * 9 7 5 13 13 C 1.39326 * 119.99834 * 115.02889 * 4 2 1 14 14 C 1.39074 * 120.07842 * 6.08770 * 13 4 2 15 15 C 1.38040 * 119.92593 * 179.76841 * 14 13 4 16 16 C 1.38440 * 120.07423 * 0.50978 * 15 14 13 17 17 Cl 1.73602 * 119.92482 * 179.72187 * 16 15 14 18 18 C 1.38440 * 120.15505 * 359.74529 * 16 15 14 19 19 C 1.38046 * 120.07455 * 359.97438 * 18 16 15 20 20 H 1.09007 * 109.46920 * 295.16885 * 1 2 3 21 21 H 1.08997 * 109.47373 * 55.16727 * 1 2 3 22 22 H 1.09002 * 109.47045 * 175.17330 * 1 2 3 23 23 H 1.09000 * 109.46830 * 240.00379 * 2 1 3 24 24 H 1.09001 * 109.47011 * 184.76621 * 3 2 1 25 25 H 1.09002 * 109.47328 * 304.76644 * 3 2 1 26 26 H 1.09001 * 109.47295 * 64.76576 * 3 2 1 27 27 H 0.97008 * 119.99395 * 179.97438 * 8 7 5 28 28 H 1.08004 * 120.03626 * 359.97438 * 14 13 4 29 29 H 1.08000 * 119.96918 * 180.22847 * 15 14 13 30 30 H 1.08001 * 119.96483 * 179.97438 * 18 16 15 31 31 H 1.07997 * 120.03922 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7787 -0.1638 2.4362 6 1 0.7771 0.1299 2.7136 7 6 2.8225 -0.0072 3.3372 8 7 4.0589 -0.2561 2.9615 9 14 2.4725 0.5572 5.0832 10 1 1.5692 -0.4170 5.7465 11 1 3.7473 0.6456 5.8397 12 1 1.8229 1.8922 5.0510 13 6 2.7319 -1.8807 1.0709 14 6 3.0911 -2.3488 -0.1885 15 6 3.8021 -3.5259 -0.3087 16 6 4.1486 -4.2456 0.8220 17 17 5.0366 -5.7291 0.6659 18 6 3.7882 -3.7853 2.0769 19 6 3.0821 -2.6061 2.2047 20 1 -0.3633 0.4371 0.9302 21 1 -0.3634 0.5870 -0.8435 22 1 -0.3633 -1.0240 -0.0865 23 1 1.8933 -0.5138 -0.8900 24 1 3.1267 1.4437 -0.0854 25 1 1.6086 1.9804 -0.8442 26 1 1.7481 1.9311 0.9296 27 1 4.7886 -0.1462 3.5912 28 1 2.8168 -1.7903 -1.0713 29 1 4.0846 -3.8881 -1.2862 30 1 4.0598 -4.3495 2.9569 31 1 2.8009 -2.2477 3.1839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337689198.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:35 Heat of formation + Delta-G solvation = 12.205458 kcal Electronic energy + Delta-G solvation = -15219.435120 eV Core-core repulsion = 12719.212017 eV Total energy + Delta-G solvation = -2500.223103 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.35689 -37.98275 -36.69388 -34.73670 -32.41153 -31.40538 -29.39046 -27.87021 -26.44311 -23.52430 -22.62303 -21.19473 -19.17526 -17.78700 -17.01671 -16.48042 -15.93864 -15.38753 -14.96540 -14.70161 -14.38230 -14.01686 -13.82713 -13.57507 -13.34946 -12.91416 -12.73366 -12.68034 -12.37615 -12.19659 -12.07680 -11.94889 -11.90838 -11.59302 -11.12343 -10.67026 -10.07874 -9.53987 -8.39297 -7.61956 -5.96380 0.86403 0.99638 1.44009 1.44768 1.50640 1.64497 2.31750 3.05937 3.19618 3.37691 4.07850 4.28753 4.33634 4.46201 4.54344 4.83303 4.89952 4.92954 5.04397 5.06063 5.09198 5.18781 5.39227 5.49032 5.51659 5.57703 5.70161 5.82628 5.94996 6.27995 6.36644 7.01511 7.50685 7.94635 8.83190 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.022444 B = 0.009458 C = 0.007188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.277425 B = 2959.616807 C = 3894.481940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.122 3.878 3 C -0.135 4.135 4 N -0.468 5.468 5 C -0.321 4.321 6 H 0.076 0.924 7 C 0.003 3.997 8 N -0.878 5.878 9 Si 0.963 3.037 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.235 3.765 14 C -0.236 4.236 15 C -0.067 4.067 16 C -0.139 4.139 17 Cl -0.101 7.101 18 C -0.084 4.084 19 C -0.153 4.153 20 H 0.046 0.954 21 H 0.082 0.918 22 H 0.046 0.954 23 H 0.081 0.919 24 H 0.027 0.973 25 H 0.079 0.921 26 H 0.045 0.955 27 H 0.263 0.737 28 H 0.130 0.870 29 H 0.136 0.864 30 H 0.116 0.884 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.050 -1.832 -4.824 5.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.018 3.982 3 C -0.193 4.193 4 N -0.160 5.160 5 C -0.451 4.451 6 H 0.094 0.906 7 C -0.201 4.201 8 N -0.512 5.512 9 Si 0.788 3.212 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.192 1.192 13 C 0.122 3.878 14 C -0.259 4.259 15 C -0.087 4.087 16 C -0.168 4.168 17 Cl -0.073 7.073 18 C -0.104 4.104 19 C -0.177 4.177 20 H 0.065 0.935 21 H 0.101 0.899 22 H 0.065 0.935 23 H 0.099 0.901 24 H 0.046 0.954 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.147 0.853 29 H 0.154 0.846 30 H 0.134 0.866 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.935 -1.669 -4.741 5.820 hybrid contribution 0.405 0.270 1.240 1.332 sum -2.529 -1.398 -3.501 4.540 Atomic orbital electron populations 1.22004 0.94800 1.01409 1.02082 1.21285 0.94789 0.93330 0.88781 1.21860 0.99519 0.96301 1.01603 1.42469 1.51986 1.16971 1.04615 1.19138 0.93756 1.41299 0.90861 0.90612 1.26167 0.94655 0.96335 1.02940 1.70147 0.99215 1.45751 1.36106 0.85449 0.77292 0.79216 0.79259 1.19551 1.21460 1.19237 1.18226 0.91328 0.85088 0.93137 1.20617 1.09354 1.00147 0.95799 1.20627 0.96917 0.93947 0.97188 1.20292 1.09367 0.92211 0.94937 1.98244 1.75543 1.35187 1.98277 1.20678 0.98130 0.95885 0.95704 1.20422 1.04405 0.94795 0.98041 0.93478 0.89935 0.93505 0.90146 0.95363 0.90222 0.93570 0.92737 0.85266 0.84612 0.86582 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 9.30 71.98 0.67 -3.92 16 2 C 0.12 4.57 3.18 44.99 0.14 4.71 16 3 C -0.13 -4.87 9.17 71.98 0.66 -4.21 16 4 N -0.47 -21.65 2.51 -489.48 -1.23 -22.88 16 5 C -0.32 -15.81 7.17 84.04 0.60 -15.21 16 6 H 0.08 3.66 7.07 -2.91 -0.02 3.64 16 7 C 0.00 0.15 3.69 84.86 0.31 0.47 16 8 N -0.88 -47.14 11.10 21.65 0.24 -46.90 16 9 Si 0.96 40.43 29.56 68.60 2.03 42.46 16 10 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 13 C 0.23 11.07 5.79 38.35 0.22 11.29 16 14 C -0.24 -9.76 9.31 22.42 0.21 -9.55 16 15 C -0.07 -2.58 9.82 22.27 0.22 -2.36 16 16 C -0.14 -5.54 6.32 22.37 0.14 -5.40 16 17 Cl -0.10 -3.43 28.95 -2.72 -0.08 -3.51 16 18 C -0.08 -3.65 9.82 22.27 0.22 -3.43 16 19 C -0.15 -7.38 7.57 22.43 0.17 -7.21 16 20 H 0.05 1.60 7.13 -2.38 -0.02 1.59 16 21 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 22 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 23 H 0.08 2.82 5.31 -2.39 -0.01 2.80 16 24 H 0.03 1.11 8.14 -2.39 -0.02 1.10 16 25 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.05 1.82 7.38 -2.39 -0.02 1.81 16 27 H 0.26 13.83 8.31 -92.70 -0.77 13.06 16 28 H 0.13 4.74 5.74 -2.91 -0.02 4.72 16 29 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 30 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 31 H 0.10 5.40 5.67 -2.91 -0.02 5.39 16 Total: -1.00 -54.69 269.89 5.65 -49.04 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 1.12 Total: 16.62 kcal Atomic # 6 Polarization: -38.40 SS G_CDS: 3.57 Total: -34.83 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -0.99 Total: -69.78 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 17 Polarization: -3.43 SS G_CDS: -0.08 Total: -3.51 kcal Total: -54.69 5.65 -49.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337689198.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.245 kcal (2) G-P(sol) polarization free energy of solvation -54.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds