Wall clock time and date at job start Sun Mar 29 2020 21:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00052 * 2 1 4 4 H 1.48501 * 109.47029 * 270.00505 * 3 2 1 5 5 H 1.48500 * 109.46805 * 30.00275 * 3 2 1 6 6 H 1.48505 * 109.47067 * 150.00219 * 3 2 1 7 7 C 1.37878 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00243 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99658 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47255 * 180.02562 * 9 7 2 11 11 C 1.34767 * 120.00032 * 180.02562 * 10 9 7 12 12 O 1.21696 * 120.00719 * 0.02562 * 11 10 9 13 13 C 1.46684 * 120.00100 * 180.02562 * 11 10 9 14 14 C 1.37870 * 126.23838 * 180.13685 * 13 11 10 15 15 C 1.39828 * 107.08722 * 180.26776 * 14 13 11 16 16 C 1.35453 * 107.86576 * 359.75451 * 15 14 13 17 17 N 1.48027 * 125.56598 * 179.97438 * 16 15 14 18 18 O 1.21793 * 120.00062 * 180.02562 * 17 16 15 19 19 O 1.21801 * 119.99576 * 0.04659 * 17 16 15 20 20 N 1.35537 * 108.87115 * 0.02562 * 16 15 14 21 21 H 0.97001 * 125.67560 * 179.97438 * 20 16 15 22 22 H 0.96998 * 120.00061 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46991 * 60.00127 * 9 7 2 24 24 H 1.09002 * 109.47544 * 300.00526 * 9 7 2 25 25 H 0.97005 * 119.99732 * 0.02562 * 10 9 7 26 26 H 1.08007 * 126.45505 * 0.02562 * 14 13 11 27 27 H 1.08003 * 126.06754 * 179.72291 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5573 -5.1058 -0.0020 13 6 2.7069 -5.9982 -0.0005 14 6 2.3913 -7.3403 -0.0036 15 6 3.5983 -8.0463 0.0046 16 6 4.6078 -7.1432 0.0068 17 7 6.0523 -7.4667 0.0155 18 8 6.8771 -6.5705 0.0173 19 8 6.4160 -8.6291 0.0205 20 7 4.0796 -5.8951 0.0009 21 1 4.5847 -5.0670 0.0014 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 3.1568 -3.4354 -0.0002 26 1 1.3987 -7.7661 -0.0072 27 1 3.7063 -9.1209 0.0089 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340456408.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:06 Heat of formation + Delta-G solvation = 1.501996 kcal Electronic energy + Delta-G solvation = -15996.829802 eV Core-core repulsion = 12951.893054 eV Total energy + Delta-G solvation = -3044.936748 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.67358 -41.41864 -38.76669 -36.80051 -34.66045 -32.71757 -31.73873 -30.84864 -27.85786 -26.22963 -23.46963 -22.04698 -21.23611 -20.66637 -19.90272 -18.69965 -17.99720 -17.85663 -16.22632 -15.45840 -15.38844 -14.79279 -14.58246 -14.11124 -13.88363 -13.46073 -12.99297 -12.20043 -12.10964 -11.85663 -11.54618 -11.39163 -11.16039 -11.02844 -10.51819 -9.82333 -9.79142 -9.60351 -9.16868 -8.95850 -8.26217 -6.33814 -4.42723 -0.19716 0.79928 1.27775 2.11419 2.54156 3.14239 3.20694 3.22609 3.36900 3.48569 4.19985 4.44303 4.58863 4.90689 5.03082 5.18340 5.48017 5.78426 5.87330 6.16428 6.58184 6.92884 7.00084 7.24192 7.39536 7.42030 7.73824 8.17407 8.39041 8.66601 9.24475 10.76055 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.033117 B = 0.005116 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.278701 B = 5471.814166 C = 6301.940348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.067 3.933 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.552 4.552 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.700 5.700 11 C 0.564 3.436 12 O -0.521 6.521 13 C 0.058 3.942 14 C -0.129 4.129 15 C -0.087 4.087 16 C 0.058 3.942 17 N 0.059 4.941 18 O -0.176 6.176 19 O -0.141 6.141 20 N -0.511 5.511 21 H 0.434 0.566 22 H 0.268 0.732 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.387 0.613 26 H 0.175 0.825 27 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.629 -12.318 0.001 14.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.590 4.590 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.347 5.347 11 C 0.346 3.654 12 O -0.397 6.397 13 C -0.063 4.063 14 C -0.154 4.154 15 C -0.116 4.116 16 C -0.139 4.139 17 N 0.576 4.424 18 O -0.386 6.386 19 O -0.356 6.356 20 N -0.113 5.113 21 H 0.274 0.726 22 H 0.078 0.922 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.220 0.780 26 H 0.193 0.807 27 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.031 -11.956 -0.001 13.391 hybrid contribution 1.636 1.402 -0.005 2.154 sum 7.667 -10.554 -0.006 13.044 Atomic orbital electron populations 1.69953 1.06131 1.27680 1.48104 1.24938 0.94957 0.99566 0.94320 0.86374 0.79614 0.82350 0.78377 1.20310 1.20828 1.19681 1.21150 0.93262 0.90227 1.54356 0.91827 1.19303 0.88033 0.81355 0.98472 1.46548 1.11371 1.06004 1.70794 1.16961 0.87019 0.81953 0.79440 1.90880 1.14151 1.83915 1.50784 1.21673 0.80076 0.97635 1.06930 1.21498 0.99272 0.89776 1.04855 1.20892 0.89218 1.00178 1.01299 1.20790 0.81669 0.87603 1.23802 1.42594 1.01188 1.00862 0.97782 1.94594 1.47996 1.41281 1.54688 1.94574 1.83554 1.04068 1.53437 1.41804 1.06779 1.07182 1.55516 0.72577 0.92173 0.94714 0.94722 0.78010 0.80739 0.81013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.71 13.29 55.43 0.74 -23.98 15 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 15 3 Si 0.91 19.96 29.54 -169.99 -5.02 14.94 15 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 7 C -0.55 -14.03 9.28 -34.44 -0.32 -14.35 15 8 H 0.06 1.51 7.60 -52.49 -0.40 1.11 15 9 C 0.25 6.04 5.43 -5.19 -0.03 6.01 15 10 N -0.70 -13.15 5.54 -62.80 -0.35 -13.49 15 11 C 0.56 10.07 7.79 -12.86 -0.10 9.97 15 12 O -0.52 -11.17 16.88 5.19 0.09 -11.08 15 13 C 0.06 0.79 7.06 -81.98 -0.58 0.21 15 14 C -0.13 -1.49 10.65 -39.12 -0.42 -1.91 15 15 C -0.09 -0.91 10.46 -39.98 -0.42 -1.32 15 16 C 0.06 0.70 8.06 -144.05 -1.16 -0.46 15 17 N 0.06 0.78 4.45 33.00 0.15 0.93 15 18 O -0.18 -2.48 19.24 -29.46 -0.57 -3.05 15 19 O -0.14 -1.87 19.00 -29.46 -0.56 -2.43 15 20 N -0.51 -6.07 5.97 -6.49 -0.04 -6.11 15 21 H 0.43 4.44 8.19 -40.82 -0.33 4.10 15 22 H 0.27 7.07 8.31 -40.82 -0.34 6.73 15 23 H 0.03 0.93 8.14 -51.93 -0.42 0.51 15 24 H 0.03 0.93 8.14 -51.93 -0.42 0.51 15 25 H 0.39 6.08 7.45 -40.82 -0.30 5.78 15 26 H 0.18 1.76 8.06 -52.48 -0.42 1.34 15 27 H 0.17 1.31 8.06 -52.48 -0.42 0.88 15 LS Contribution 263.36 15.07 3.97 3.97 Total: -1.00 -29.87 263.36 -6.58 -36.45 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -1.86 Total: 4.03 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -3.12 Total: -0.19 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.50 Total: -42.65 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -1.04 Total: -16.55 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.87 -6.58 -36.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340456408.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.952 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds