Wall clock time and date at job start Sun Mar 29 2020 21:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00052 * 2 1 4 4 H 1.48501 * 109.47029 * 270.00505 * 3 2 1 5 5 H 1.48500 * 109.46805 * 30.00275 * 3 2 1 6 6 H 1.48505 * 109.47067 * 150.00219 * 3 2 1 7 7 C 1.37878 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00243 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99658 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47255 * 180.02562 * 9 7 2 11 11 C 1.34767 * 120.00032 * 180.02562 * 10 9 7 12 12 O 1.21696 * 120.00719 * 0.02562 * 11 10 9 13 13 C 1.46684 * 120.00100 * 180.02562 * 11 10 9 14 14 C 1.37870 * 126.23838 * 180.13685 * 13 11 10 15 15 C 1.39828 * 107.08722 * 180.26776 * 14 13 11 16 16 C 1.35453 * 107.86576 * 359.75451 * 15 14 13 17 17 N 1.48027 * 125.56598 * 179.97438 * 16 15 14 18 18 O 1.21793 * 120.00062 * 180.02562 * 17 16 15 19 19 O 1.21801 * 119.99576 * 0.04659 * 17 16 15 20 20 N 1.35537 * 108.87115 * 0.02562 * 16 15 14 21 21 H 0.97001 * 125.67560 * 179.97438 * 20 16 15 22 22 H 0.96998 * 120.00061 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46991 * 60.00127 * 9 7 2 24 24 H 1.09002 * 109.47544 * 300.00526 * 9 7 2 25 25 H 0.97005 * 119.99732 * 0.02562 * 10 9 7 26 26 H 1.08007 * 126.45505 * 0.02562 * 14 13 11 27 27 H 1.08003 * 126.06754 * 179.72291 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5573 -5.1058 -0.0020 13 6 2.7069 -5.9982 -0.0005 14 6 2.3913 -7.3403 -0.0036 15 6 3.5983 -8.0463 0.0046 16 6 4.6078 -7.1432 0.0068 17 7 6.0523 -7.4667 0.0155 18 8 6.8771 -6.5705 0.0173 19 8 6.4160 -8.6291 0.0205 20 7 4.0796 -5.8951 0.0009 21 1 4.5847 -5.0670 0.0014 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 3.1568 -3.4354 -0.0002 26 1 1.3987 -7.7661 -0.0072 27 1 3.7063 -9.1209 0.0089 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340456408.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:05 Heat of formation + Delta-G solvation = -18.548360 kcal Electronic energy + Delta-G solvation = -15997.699251 eV Core-core repulsion = 12951.893054 eV Total energy + Delta-G solvation = -3045.806197 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.68458 -42.46620 -40.27094 -37.83503 -36.40710 -34.56334 -32.75891 -31.97128 -29.60102 -27.49504 -25.11651 -23.39532 -22.25400 -21.76559 -21.22087 -19.78176 -19.35595 -18.86736 -18.04452 -17.16897 -16.69925 -16.29981 -15.82138 -15.43665 -15.15841 -14.46943 -14.20945 -14.09588 -14.00727 -13.01328 -12.90683 -12.77016 -12.57838 -12.44375 -12.30308 -11.57745 -11.39454 -10.88591 -10.68841 -10.31293 -9.96670 -8.34903 -6.51594 -1.24677 -0.20911 0.17746 1.16922 1.41619 1.42567 1.53235 1.55149 2.01174 2.05109 2.37133 3.01078 3.45838 3.59712 3.73852 4.21907 4.65341 4.78848 4.89166 5.02804 5.15727 5.21265 5.27622 5.49925 5.65613 5.75646 6.35975 6.49996 6.60830 6.99935 7.22746 8.76727 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.033117 B = 0.005116 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.278701 B = 5471.814166 C = 6301.940348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.980 3.020 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.562 4.562 8 H 0.083 0.917 9 C 0.265 3.735 10 N -0.698 5.698 11 C 0.570 3.430 12 O -0.562 6.562 13 C 0.039 3.961 14 C -0.111 4.111 15 C -0.069 4.069 16 C 0.058 3.942 17 N 0.059 4.941 18 O -0.203 6.203 19 O -0.127 6.127 20 N -0.507 5.507 21 H 0.439 0.561 22 H 0.270 0.730 23 H 0.001 0.999 24 H 0.001 0.999 25 H 0.404 0.596 26 H 0.191 0.809 27 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.385 -13.311 0.007 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.600 4.600 8 H 0.101 0.899 9 C 0.143 3.857 10 N -0.346 5.346 11 C 0.356 3.644 12 O -0.441 6.441 13 C -0.081 4.081 14 C -0.137 4.137 15 C -0.097 4.097 16 C -0.139 4.139 17 N 0.574 4.426 18 O -0.407 6.407 19 O -0.347 6.347 20 N -0.110 5.110 21 H 0.281 0.719 22 H 0.079 0.921 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.239 0.761 26 H 0.208 0.792 27 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 7.863 -12.911 0.005 15.117 hybrid contribution 1.085 1.538 -0.008 1.883 sum 8.948 -11.372 -0.003 14.470 Atomic orbital electron populations 1.70098 1.08065 1.28728 1.49453 1.25962 0.95746 1.03627 0.93751 0.85217 0.78510 0.77310 0.78582 1.19680 1.20924 1.18163 1.21569 0.94283 0.90546 1.53556 0.89937 1.18726 0.88389 0.83309 0.95320 1.46196 1.11421 1.05484 1.71530 1.17320 0.87223 0.82256 0.77635 1.90854 1.16268 1.84624 1.52315 1.20916 0.80187 0.96720 1.10249 1.21803 1.00550 0.88710 1.02681 1.21302 0.87659 1.01569 0.99190 1.20969 0.81311 0.87905 1.23704 1.42700 1.01522 1.00756 0.97580 1.94610 1.48503 1.41396 1.56162 1.94562 1.83790 1.03990 1.52377 1.41691 1.06090 1.07722 1.55473 0.71948 0.92076 0.98110 0.98112 0.76068 0.79184 0.77575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.19 13.29 21.45 0.28 -52.90 15 2 C 0.01 0.51 5.46 84.66 0.46 0.98 15 3 Si 0.98 40.64 29.54 68.60 2.03 42.67 15 4 H -0.27 -10.94 7.11 99.48 0.71 -10.23 15 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 15 6 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 7 C -0.56 -28.75 9.28 25.60 0.24 -28.51 15 8 H 0.08 3.81 7.60 -2.91 -0.02 3.78 15 9 C 0.26 13.38 5.43 85.63 0.46 13.84 15 10 N -0.70 -26.59 5.54 -470.81 -2.61 -29.20 15 11 C 0.57 20.50 7.79 86.45 0.67 21.18 15 12 O -0.56 -24.69 16.88 -4.34 -0.07 -24.76 15 13 C 0.04 1.01 7.06 40.35 0.28 1.30 15 14 C -0.11 -2.27 10.65 22.57 0.24 -2.03 15 15 C -0.07 -1.17 10.46 22.01 0.23 -0.94 15 16 C 0.06 1.24 8.06 127.91 1.03 2.27 15 17 N 0.06 1.42 4.45 -49.51 -0.22 1.20 15 18 O -0.20 -5.44 19.24 18.90 0.36 -5.07 15 19 O -0.13 -2.98 19.00 18.88 0.36 -2.62 15 20 N -0.51 -11.12 5.97 -174.45 -1.04 -12.17 15 21 H 0.44 8.37 8.19 -92.71 -0.76 7.61 15 22 H 0.27 14.55 8.31 -92.71 -0.77 13.78 15 23 H 0.00 0.05 8.14 -2.39 -0.02 0.03 15 24 H 0.00 0.05 8.14 -2.39 -0.02 0.03 15 25 H 0.40 12.52 7.45 -92.70 -0.69 11.83 15 26 H 0.19 3.29 8.06 -2.91 -0.02 3.27 15 27 H 0.21 2.06 8.06 -2.91 -0.02 2.04 15 Total: -1.00 -65.45 263.36 2.50 -62.94 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -0.21 Total: 11.83 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 3.62 Total: 8.08 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -3.59 Total: -93.06 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: 0.65 Total: -32.46 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -65.45 2.50 -62.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340456408.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.396 kcal (2) G-P(sol) polarization free energy of solvation -65.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds