Wall clock time and date at job start Sun Mar 29 2020 22:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99980 * 2 1 4 4 H 1.48497 * 109.47126 * 240.00219 * 3 2 1 5 5 H 1.48500 * 109.47065 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46895 * 120.00701 * 3 2 1 7 7 C 1.37877 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99852 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00038 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46801 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99536 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99950 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99432 * 179.97438 * 11 10 9 14 14 C 1.53005 * 109.46526 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46909 * 180.02562 * 14 13 11 16 16 C 1.38423 * 122.53613 * 270.00211 * 15 14 13 17 17 C 1.33390 * 114.91977 * 180.02562 * 16 15 14 18 18 S 1.75887 * 109.59565 * 359.75483 * 17 16 15 19 19 C 1.33391 * 122.54338 * 90.02238 * 15 14 13 20 20 H 0.97001 * 119.99703 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46872 * 59.99912 * 9 7 2 22 22 H 1.08994 * 109.47072 * 299.99867 * 9 7 2 23 23 H 0.96995 * 120.00320 * 0.02562 * 10 9 7 24 24 H 1.08994 * 109.46984 * 60.00404 * 13 11 10 25 25 H 1.08994 * 109.47395 * 299.99944 * 13 11 10 26 26 H 1.08994 * 109.47301 * 60.00425 * 14 13 11 27 27 H 1.09003 * 109.46866 * 299.99861 * 14 13 11 28 28 H 1.08001 * 122.53963 * 0.04211 * 16 15 14 29 29 H 1.07998 * 125.20164 * 180.02562 * 17 16 15 30 30 H 1.08002 * 125.19887 * 359.95301 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1031 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7536 -4.8834 -0.0015 12 8 0.5613 -5.1049 -0.0006 13 6 2.7330 -6.0288 -0.0033 14 6 1.9678 -7.3539 -0.0032 15 6 2.9471 -8.4993 -0.0044 16 6 3.4299 -9.0648 -1.1720 17 6 4.2888 -10.0701 -0.9963 18 16 4.5323 -10.3441 0.7240 19 6 3.4139 -9.0455 1.1195 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5566 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 3.1566 -3.4355 -0.0021 24 1 3.3609 -5.9714 0.8857 25 1 3.3582 -5.9709 -0.8942 26 1 1.3402 -7.4111 -0.8924 27 1 1.3423 -7.4120 0.8875 28 1 3.1339 -8.7180 -2.1511 29 1 4.7654 -10.6276 -1.7890 30 1 3.1492 -8.7347 2.1193 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350943528.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:09 Heat of formation + Delta-G solvation = -44.846371 kcal Electronic energy + Delta-G solvation = -13875.005361 eV Core-core repulsion = 11374.352011 eV Total energy + Delta-G solvation = -2500.653350 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.63236 -39.10086 -36.15578 -34.36292 -33.71453 -30.33492 -29.16821 -26.38931 -24.48488 -23.15844 -21.27280 -19.58102 -18.93150 -18.42335 -17.43782 -17.03146 -16.61536 -16.06294 -15.91409 -14.79953 -14.63804 -14.15657 -13.95780 -13.83169 -13.76560 -13.16934 -13.04953 -12.77695 -12.71252 -12.67187 -12.23139 -11.92892 -11.60432 -11.50760 -10.79152 -10.76084 -9.81427 -9.66876 -9.23121 -8.29071 -6.46002 0.13575 0.81835 1.11666 1.43313 1.47495 1.55746 1.78141 1.79760 2.34118 2.66785 3.05604 3.86485 4.01573 4.16561 4.27590 4.39453 4.64818 4.68136 4.74270 4.91261 5.12877 5.15854 5.22466 5.24619 5.49373 5.53972 5.64175 5.70885 5.85388 6.65272 6.92739 7.23598 7.51824 8.82995 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.059893 B = 0.003681 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.390162 B = 7604.479006 C = 7810.542172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.084 0.916 9 C 0.264 3.736 10 N -0.710 5.710 11 C 0.493 3.507 12 O -0.605 6.605 13 C -0.116 4.116 14 C -0.040 4.040 15 C -0.106 4.106 16 C -0.145 4.145 17 C -0.210 4.210 18 S 0.099 5.901 19 C -0.220 4.220 20 H 0.269 0.731 21 H -0.013 1.013 22 H -0.013 1.013 23 H 0.409 0.591 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.149 0.851 29 H 0.186 0.814 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.920 -18.405 -0.260 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.102 0.898 9 C 0.141 3.859 10 N -0.359 5.359 11 C 0.281 3.719 12 O -0.488 6.488 13 C -0.156 4.156 14 C -0.080 4.080 15 C -0.118 4.118 16 C -0.175 4.175 17 C -0.345 4.345 18 S 0.363 5.637 19 C -0.355 4.355 20 H 0.078 0.922 21 H 0.005 0.995 22 H 0.005 0.995 23 H 0.245 0.755 24 H 0.131 0.869 25 H 0.133 0.867 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.167 0.833 29 H 0.204 0.796 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 12.828 -19.468 0.594 23.322 hybrid contribution -0.785 2.033 -0.783 2.316 sum 12.042 -17.435 -0.189 21.190 Atomic orbital electron populations 1.70138 1.08310 1.28645 1.49945 1.26089 0.95785 1.03975 0.93822 0.85195 0.77899 0.76524 0.79529 1.18603 1.21102 1.18632 1.21612 0.94332 0.90642 1.52984 0.89785 1.18540 0.88802 0.84521 0.94023 1.46251 1.11179 1.05704 1.72797 1.21611 0.89930 0.85125 0.75263 1.90633 1.19684 1.85646 1.52816 1.21603 0.97178 0.90381 1.06415 1.19920 0.95139 0.89626 1.03316 1.18947 1.00655 0.99351 0.92847 1.20302 0.99568 0.97849 0.99741 1.25906 1.05264 1.03818 0.99498 1.84164 1.44034 1.34401 1.01098 1.25717 1.04502 1.02416 1.02906 0.92236 0.99529 0.99548 0.75547 0.86867 0.86743 0.91349 0.91560 0.83305 0.79640 0.81039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.99 42.33 29.54 68.60 2.03 44.35 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 7 C -0.56 -30.54 9.28 25.60 0.24 -30.30 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.26 14.66 5.43 85.63 0.46 15.12 16 10 N -0.71 -30.05 5.55 -466.78 -2.59 -32.64 16 11 C 0.49 19.53 7.83 87.66 0.69 20.22 16 12 O -0.61 -30.00 15.98 -3.02 -0.05 -30.04 16 13 C -0.12 -3.01 5.68 29.85 0.17 -2.84 16 14 C -0.04 -1.02 4.76 29.85 0.14 -0.88 16 15 C -0.11 -2.25 5.06 -20.92 -0.11 -2.36 16 16 C -0.14 -2.71 9.98 21.22 0.21 -2.50 16 17 C -0.21 -3.30 11.23 66.72 0.75 -2.55 16 18 S 0.10 1.61 23.34 -56.49 -1.32 0.29 16 19 C -0.22 -4.24 10.98 66.72 0.73 -3.51 16 20 H 0.27 15.26 8.31 -92.71 -0.77 14.48 16 21 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 22 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 23 H 0.41 14.16 8.32 -92.71 -0.77 13.39 16 24 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 25 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.07 1.92 8.09 -2.39 -0.02 1.90 16 27 H 0.07 1.86 8.08 -2.39 -0.02 1.84 16 28 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 29 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.17 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -71.00 281.82 2.47 -68.53 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.37 Total: 14.81 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 3.75 Total: -8.98 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -2.31 Total: -88.96 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.05 Total: -30.04 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -1.32 Total: 0.29 kcal Total: -71.00 2.47 -68.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350943528.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.683 kcal (2) G-P(sol) polarization free energy of solvation -71.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds