Wall clock time and date at job start Sun Mar 29 2020 22:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38236 * 119.98811 * 2 1 4 4 C 1.38329 * 119.98484 * 180.02562 * 3 2 1 5 5 Cl 1.73597 * 120.01518 * 179.97438 * 4 3 2 6 6 C 1.38374 * 119.97272 * 359.72714 * 4 3 2 7 7 C 1.38191 * 119.98556 * 0.54937 * 6 4 3 8 8 C 1.50706 * 119.99420 * 179.72866 * 7 6 4 9 9 N 1.46902 * 109.46577 * 269.72268 * 8 7 6 10 10 C 1.46905 * 110.99800 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47194 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00034 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00022 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99865 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00095 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47027 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46675 * 120.00507 * 15 13 11 18 18 H 1.48501 * 109.47312 * 240.00337 * 15 13 11 19 19 C 1.38214 * 119.99613 * 180.02562 * 2 1 3 20 20 H 1.08997 * 109.47079 * 269.97411 * 1 2 3 21 21 H 1.08999 * 109.47733 * 29.97761 * 1 2 3 22 22 H 1.09004 * 109.46928 * 149.97786 * 1 2 3 23 23 H 1.08002 * 120.00953 * 0.02562 * 3 2 1 24 24 H 1.08002 * 120.01279 * 180.27276 * 6 4 3 25 25 H 1.09000 * 109.47318 * 29.71776 * 8 7 6 26 26 H 1.09000 * 109.47161 * 149.72406 * 8 7 6 27 27 H 1.00896 * 111.00594 * 303.95433 * 9 8 7 28 28 H 1.09002 * 109.47091 * 300.00139 * 10 9 8 29 29 H 1.09001 * 109.46854 * 60.00166 * 10 9 8 30 30 H 0.97003 * 120.00178 * 179.97438 * 14 13 11 31 31 H 1.08003 * 119.98266 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5813 1.1972 -0.0005 5 17 4.4497 2.7003 -0.0012 6 6 4.2725 -0.0015 0.0046 7 6 3.5806 -1.1977 -0.0011 8 6 4.3333 -2.5034 -0.0017 9 7 4.5773 -2.9272 -1.3869 10 6 5.3112 -4.1991 -1.4267 11 6 5.5431 -4.6007 -2.8606 12 1 5.1817 -3.9735 -3.6622 13 6 6.2174 -5.7681 -3.1492 14 7 6.6578 -6.5316 -2.1731 15 14 6.5041 -6.2663 -4.9266 16 1 5.9140 -5.2445 -5.8283 17 1 7.9633 -6.3685 -5.1826 18 1 5.8634 -7.5815 -5.1816 19 6 2.1980 -1.1970 -0.0005 20 1 -0.3633 -0.0005 1.0276 21 1 -0.3634 0.8901 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.6579 2.1326 0.0004 24 1 5.3525 -0.0023 0.0087 25 1 5.2861 -2.3738 0.5117 26 1 3.7439 -3.2627 0.5122 27 1 3.7127 -2.9920 -1.9029 28 1 6.2707 -4.0809 -0.9232 29 1 4.7290 -4.9705 -0.9226 30 1 7.1319 -7.3532 -2.3760 31 1 1.6577 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353233966.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:18 Heat of formation + Delta-G solvation = 0.348826 kcal Electronic energy + Delta-G solvation = -13987.718468 eV Core-core repulsion = 11486.981222 eV Total energy + Delta-G solvation = -2500.737245 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.52023 -36.54033 -35.47243 -33.07995 -32.18758 -30.74686 -27.25874 -26.90982 -24.42326 -22.04942 -21.44068 -20.51478 -16.77911 -16.27857 -15.84417 -15.26401 -14.71797 -14.38111 -14.04430 -13.44919 -13.21488 -13.13208 -12.75241 -12.45259 -12.32322 -11.76323 -11.45030 -11.24802 -11.16563 -11.06831 -10.82709 -10.71480 -10.55738 -9.96646 -9.22155 -8.66103 -8.57682 -8.49904 -7.36131 -6.05584 -4.07633 1.22865 1.32395 2.15594 3.30212 3.37548 3.42932 3.64757 4.42240 4.71389 4.77606 5.07179 5.24286 5.30498 5.30758 5.42163 5.46446 5.48215 5.70377 5.73392 5.94708 6.04506 6.17853 6.28496 6.45420 6.68956 6.88289 7.18481 7.36415 7.75135 8.08198 8.32823 8.54886 9.01660 9.57558 11.05561 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.029611 B = 0.004662 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.374939 B = 6005.184551 C = 6429.408396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.077 4.077 3 C -0.122 4.122 4 C -0.030 4.030 5 Cl -0.080 7.080 6 C -0.096 4.096 7 C -0.049 4.049 8 C 0.093 3.907 9 N -0.683 5.683 10 C 0.193 3.807 11 C -0.514 4.514 12 H 0.063 0.937 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.284 1.284 19 C -0.112 4.112 20 H 0.070 0.930 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.127 0.873 24 H 0.134 0.866 25 H 0.076 0.924 26 H 0.032 0.968 27 H 0.330 0.670 28 H 0.029 0.971 29 H -0.012 1.012 30 H 0.261 0.739 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.253 14.212 6.309 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.078 4.078 3 C -0.141 4.141 4 C -0.056 4.056 5 Cl -0.051 7.051 6 C -0.115 4.115 7 C -0.050 4.050 8 C -0.036 4.036 9 N -0.314 5.314 10 C 0.067 3.933 11 C -0.553 4.553 12 H 0.081 0.919 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.131 4.131 20 H 0.089 0.911 21 H 0.085 0.915 22 H 0.088 0.912 23 H 0.145 0.855 24 H 0.152 0.848 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.147 0.853 28 H 0.048 0.952 29 H 0.006 0.994 30 H 0.071 0.929 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.490 14.543 6.273 18.464 hybrid contribution -0.287 -0.860 -0.648 1.114 sum -9.777 13.684 5.625 17.733 Atomic orbital electron populations 1.20775 0.90730 1.02993 1.02352 1.19772 0.96126 0.92360 0.99522 1.20807 0.91865 0.98387 1.03007 1.20869 0.92298 0.86875 1.05605 1.98353 1.76982 1.32708 1.97043 1.20961 1.00728 0.89955 0.99866 1.19994 0.93295 0.95265 0.96447 1.20909 0.98400 0.91013 0.93299 1.60738 1.25521 1.36155 1.08969 1.19603 0.93192 0.83056 0.97496 1.21212 1.36073 1.05877 0.92104 0.91860 1.24987 0.95643 0.96330 0.97585 1.69972 1.38571 1.13827 1.31380 0.86420 0.77923 0.78296 0.84655 1.19626 1.20953 1.21069 1.21081 0.93741 0.97772 1.00518 0.91118 0.91504 0.91196 0.85460 0.84802 0.90582 0.94992 0.85314 0.95248 0.99443 0.92928 0.85647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.08 -0.91 5.88 -104.63 -0.62 -1.53 16 3 C -0.12 -1.47 9.49 -39.55 -0.38 -1.84 16 4 C -0.03 -0.40 6.32 -39.50 -0.25 -0.65 16 5 Cl -0.08 -0.98 28.96 -51.86 -1.50 -2.49 16 6 C -0.10 -1.41 9.49 -39.55 -0.38 -1.79 16 7 C -0.05 -0.75 5.39 -104.63 -0.56 -1.31 16 8 C 0.09 1.63 5.81 -4.97 -0.03 1.60 16 9 N -0.68 -14.60 6.48 -116.33 -0.75 -15.36 16 10 C 0.19 5.02 5.44 -4.97 -0.03 5.00 16 11 C -0.51 -14.58 9.32 -34.44 -0.32 -14.90 16 12 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 15 Si 0.90 21.69 29.54 -169.99 -5.02 16.66 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 C -0.11 -1.50 9.36 -39.58 -0.37 -1.87 16 20 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 22 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 23 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 24 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 25 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 26 H 0.03 0.54 8.09 -51.93 -0.42 0.12 16 27 H 0.33 6.80 8.72 -39.29 -0.34 6.45 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 29 H -0.01 -0.33 8.14 -51.93 -0.42 -0.76 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 287.32 15.07 4.33 4.33 Total: -1.00 -29.76 287.32 -8.98 -38.73 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -4.10 Total: 0.53 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -2.66 Total: -16.40 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.02 Total: -41.38 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.76 -8.98 -38.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353233966.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.083 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds