Wall clock time and date at job start Sun Mar 29 2020 22:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99532 * 2 1 4 4 H 1.48501 * 109.46735 * 240.00225 * 3 2 1 5 5 H 1.48496 * 109.47254 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47157 * 120.00544 * 3 2 1 7 7 C 1.37873 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99422 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99936 * 0.02562 * 7 2 1 10 10 S 1.81408 * 109.46801 * 179.97438 * 9 7 2 11 11 C 1.81400 * 102.99866 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.46803 * 180.02562 * 11 10 9 13 13 C 1.41375 * 128.01098 * 270.00143 * 12 11 10 14 14 N 1.30175 * 106.40111 * 180.02562 * 13 12 11 15 15 O 1.20923 * 111.59718 * 359.97438 * 14 13 12 16 16 C 1.34035 * 111.57389 * 0.02562 * 15 14 13 17 17 C 1.50699 * 126.77965 * 180.26609 * 16 15 14 18 18 C 1.53008 * 117.49669 * 8.42825 * 17 16 15 19 19 C 1.53006 * 117.49570 * 299.77061 * 17 16 15 20 20 H 0.97001 * 120.00721 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47446 * 60.00153 * 9 7 2 22 22 H 1.08995 * 109.46999 * 299.99242 * 9 7 2 23 23 H 1.09000 * 109.46796 * 60.00029 * 11 10 9 24 24 H 1.08997 * 109.47327 * 299.99783 * 11 10 9 25 25 H 1.08003 * 126.80166 * 359.96509 * 13 12 11 26 26 H 1.08999 * 115.55279 * 154.10477 * 17 16 15 27 27 H 1.08993 * 117.49543 * 359.97438 * 18 17 16 28 28 H 1.08999 * 117.49597 * 145.02702 * 18 17 16 29 29 H 1.08999 * 117.49729 * 214.97815 * 19 17 16 30 30 H 1.09005 * 117.49568 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2510 -2.4991 0.0005 10 16 2.4299 -3.8779 0.0005 11 6 1.3517 -5.3367 0.0013 12 6 2.1957 -6.5851 0.0020 13 6 2.6834 -7.3070 -1.1114 14 7 3.3608 -8.3096 -0.6315 15 8 3.3607 -8.3087 0.5778 16 6 2.6626 -7.2756 1.0698 17 6 2.4458 -6.9438 2.5237 18 6 3.2375 -7.7476 3.5574 19 6 1.7351 -7.9873 3.3880 20 1 -0.4851 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8903 23 1 0.7222 -5.3236 -0.8885 24 1 0.7228 -5.3232 0.8915 25 1 2.5245 -7.0734 -2.1539 26 1 2.2535 -5.8935 2.7427 27 1 3.9146 -8.5165 3.1857 28 1 3.5656 -7.2261 4.4565 29 1 1.0755 -7.6234 4.1758 30 1 1.4239 -8.9135 2.9048 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413008941.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:49 Heat of formation + Delta-G solvation = 72.458392 kcal Electronic energy + Delta-G solvation = -14107.056059 eV Core-core repulsion = 11611.489426 eV Total energy + Delta-G solvation = -2495.566634 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.83791 -37.46402 -34.60466 -33.17597 -31.72703 -28.64690 -27.97551 -24.11811 -23.19896 -22.58629 -21.97649 -20.30064 -17.52533 -17.19026 -16.51052 -15.88922 -15.33424 -14.67338 -14.53665 -13.85803 -13.50920 -13.21961 -12.64930 -12.33106 -12.27804 -11.81753 -11.73702 -11.34088 -11.15996 -10.87093 -10.83905 -10.55587 -10.43732 -9.92256 -9.63837 -8.97911 -8.67366 -8.63828 -6.75841 -6.22262 -4.26749 1.39393 2.09789 2.92989 3.09176 3.26503 3.29752 3.34334 3.73917 3.80630 4.33232 4.33740 4.39449 4.69000 4.79801 4.87779 5.13646 5.14917 5.36159 5.46425 5.55523 5.75188 5.81922 5.86502 5.93142 5.98033 6.15165 7.05014 7.06630 7.72011 7.97744 8.31957 8.74902 9.36568 10.88906 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.035668 B = 0.005148 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.834810 B = 5437.355307 C = 5791.304601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.067 0.933 9 C 0.089 3.911 10 S -0.295 6.295 11 C -0.016 4.016 12 C -0.165 4.165 13 C 0.008 3.992 14 N -0.371 5.371 15 O 0.093 5.907 16 C 0.010 3.990 17 C -0.082 4.082 18 C -0.166 4.166 19 C -0.164 4.164 20 H 0.266 0.734 21 H 0.036 0.964 22 H 0.036 0.964 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.191 0.809 26 H 0.144 0.856 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.880 -14.041 4.710 14.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.085 0.915 9 C -0.057 4.057 10 S -0.067 6.067 11 C -0.164 4.164 12 C -0.170 4.170 13 C -0.172 4.172 14 N -0.075 5.075 15 O 0.028 5.972 16 C -0.056 4.056 17 C -0.101 4.101 18 C -0.203 4.203 19 C -0.201 4.201 20 H 0.076 0.924 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.106 0.894 24 H 0.105 0.895 25 H 0.208 0.792 26 H 0.161 0.839 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.493 -14.886 4.141 15.841 hybrid contribution -1.438 1.660 -0.129 2.200 sum 2.055 -13.226 4.011 13.973 Atomic orbital electron populations 1.69939 1.06138 1.27495 1.49560 1.24955 0.94968 0.99254 0.94597 0.86410 0.79410 0.81837 0.78997 1.19892 1.21031 1.19890 1.20629 0.93442 0.88717 1.52472 0.91536 1.21077 0.93716 0.90814 1.00126 1.86913 1.20687 1.01067 1.98014 1.21399 0.97974 0.91753 1.05250 1.20430 1.05480 0.99567 0.91550 1.24877 0.97865 0.92425 1.01989 1.73850 1.20503 1.22202 0.90959 1.84728 1.55472 1.41120 1.15836 1.23152 0.96648 0.89809 0.96029 1.20495 1.07376 0.99239 0.83001 1.23056 0.94512 1.02609 1.00080 1.23109 0.95560 0.99730 1.01730 0.92415 0.94570 0.94547 0.89447 0.89531 0.79164 0.83878 0.87994 0.87572 0.87533 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.51 -14.29 9.13 -34.44 -0.31 -14.60 16 8 H 0.07 1.86 7.71 -52.49 -0.40 1.45 16 9 C 0.09 2.27 5.70 36.01 0.21 2.47 16 10 S -0.29 -6.27 21.64 -107.50 -2.33 -8.60 16 11 C -0.02 -0.26 6.36 36.01 0.23 -0.03 16 12 C -0.17 -2.55 5.58 -104.42 -0.58 -3.13 16 13 C 0.01 0.12 12.16 -17.06 -0.21 -0.09 16 14 N -0.37 -5.78 12.07 30.35 0.37 -5.42 16 15 O 0.09 1.37 10.99 17.19 0.19 1.56 16 16 C 0.01 0.14 6.94 -35.30 -0.25 -0.11 16 17 C -0.08 -0.96 6.05 -91.76 -0.56 -1.51 16 18 C -0.17 -1.54 10.19 -26.69 -0.27 -1.81 16 19 C -0.16 -1.48 10.24 -26.69 -0.27 -1.76 16 20 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 21 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.09 1.37 8.14 -51.92 -0.42 0.95 16 24 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 25 H 0.19 2.35 8.06 -52.48 -0.42 1.93 16 26 H 0.14 1.76 8.14 -51.93 -0.42 1.34 16 27 H 0.10 0.94 8.02 -51.93 -0.42 0.53 16 28 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 283.81 15.07 4.28 4.28 Total: -1.00 -29.75 283.81 -7.65 -37.40 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -3.76 Total: -1.63 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -2.11 Total: -18.84 kcal Atomic # 7 Polarization: -31.39 SS G_CDS: 1.10 Total: -30.29 kcal Atomic # 8 Polarization: 1.37 SS G_CDS: 0.19 Total: 1.56 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -6.27 SS G_CDS: -2.33 Total: -8.60 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.75 -7.65 -37.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413008941.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.857 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds