Wall clock time and date at job start Sun Mar 29 2020 22:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99532 * 2 1 4 4 H 1.48501 * 109.46735 * 240.00225 * 3 2 1 5 5 H 1.48496 * 109.47254 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47157 * 120.00544 * 3 2 1 7 7 C 1.37873 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99422 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99936 * 0.02562 * 7 2 1 10 10 S 1.81408 * 109.46801 * 179.97438 * 9 7 2 11 11 C 1.81400 * 102.99866 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.46803 * 180.02562 * 11 10 9 13 13 C 1.41375 * 128.01098 * 270.00143 * 12 11 10 14 14 N 1.30175 * 106.40111 * 180.02562 * 13 12 11 15 15 O 1.20923 * 111.59718 * 359.97438 * 14 13 12 16 16 C 1.34035 * 111.57389 * 0.02562 * 15 14 13 17 17 C 1.50699 * 126.77965 * 180.26609 * 16 15 14 18 18 C 1.53008 * 117.49669 * 8.42825 * 17 16 15 19 19 C 1.53006 * 117.49570 * 299.77061 * 17 16 15 20 20 H 0.97001 * 120.00721 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47446 * 60.00153 * 9 7 2 22 22 H 1.08995 * 109.46999 * 299.99242 * 9 7 2 23 23 H 1.09000 * 109.46796 * 60.00029 * 11 10 9 24 24 H 1.08997 * 109.47327 * 299.99783 * 11 10 9 25 25 H 1.08003 * 126.80166 * 359.96509 * 13 12 11 26 26 H 1.08999 * 115.55279 * 154.10477 * 17 16 15 27 27 H 1.08993 * 117.49543 * 359.97438 * 18 17 16 28 28 H 1.08999 * 117.49597 * 145.02702 * 18 17 16 29 29 H 1.08999 * 117.49729 * 214.97815 * 19 17 16 30 30 H 1.09005 * 117.49568 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2510 -2.4991 0.0005 10 16 2.4299 -3.8779 0.0005 11 6 1.3517 -5.3367 0.0013 12 6 2.1957 -6.5851 0.0020 13 6 2.6834 -7.3070 -1.1114 14 7 3.3608 -8.3096 -0.6315 15 8 3.3607 -8.3087 0.5778 16 6 2.6626 -7.2756 1.0698 17 6 2.4458 -6.9438 2.5237 18 6 3.2375 -7.7476 3.5574 19 6 1.7351 -7.9873 3.3880 20 1 -0.4851 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8903 23 1 0.7222 -5.3236 -0.8885 24 1 0.7228 -5.3232 0.8915 25 1 2.5245 -7.0734 -2.1539 26 1 2.2535 -5.8935 2.7427 27 1 3.9146 -8.5165 3.1857 28 1 3.5656 -7.2261 4.4565 29 1 1.0755 -7.6234 4.1758 30 1 1.4239 -8.9135 2.9048 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413008941.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:48 Heat of formation + Delta-G solvation = 56.917747 kcal Electronic energy + Delta-G solvation = -14107.729952 eV Core-core repulsion = 11611.489426 eV Total energy + Delta-G solvation = -2496.240527 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -46.00604 -38.30863 -35.79266 -35.28055 -32.87914 -30.68549 -29.30493 -25.23151 -25.14783 -23.41452 -23.07601 -21.40750 -18.76108 -18.60359 -18.17311 -17.15733 -16.80212 -16.34581 -15.76902 -15.06016 -14.76743 -14.63127 -14.51975 -14.10450 -13.87546 -12.95895 -12.72179 -12.67537 -12.48280 -12.37486 -12.30161 -12.00879 -11.66281 -11.37693 -11.23226 -10.73448 -10.73288 -9.88763 -8.49479 -8.32622 -6.45649 0.19539 0.78405 1.40694 1.43549 1.50412 1.58904 1.96098 2.04325 2.37548 2.91991 3.02164 3.23424 3.38996 3.65347 3.84073 4.00711 4.08977 4.25741 4.46212 4.58305 4.69735 4.78211 4.94756 4.96553 4.96906 5.01863 5.12655 5.24698 5.57403 5.89753 6.61262 7.16770 7.22393 8.78873 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.035668 B = 0.005148 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.834810 B = 5437.355307 C = 5791.304601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.017 3.983 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.060 0.940 9 C 0.093 3.907 10 S -0.306 6.306 11 C 0.004 3.996 12 C -0.193 4.193 13 C 0.010 3.990 14 N -0.387 5.387 15 O 0.089 5.911 16 C 0.027 3.973 17 C -0.113 4.113 18 C -0.155 4.155 19 C -0.145 4.145 20 H 0.271 0.729 21 H 0.016 0.984 22 H 0.019 0.981 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.211 0.789 26 H 0.135 0.865 27 H 0.103 0.897 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.350 -14.534 5.480 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.184 4.184 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.576 4.576 8 H 0.078 0.922 9 C -0.055 4.055 10 S -0.078 6.078 11 C -0.144 4.144 12 C -0.198 4.198 13 C -0.169 4.169 14 N -0.094 5.094 15 O 0.028 5.972 16 C -0.039 4.039 17 C -0.132 4.132 18 C -0.191 4.191 19 C -0.182 4.182 20 H 0.079 0.921 21 H 0.035 0.965 22 H 0.038 0.962 23 H 0.115 0.885 24 H 0.115 0.885 25 H 0.228 0.772 26 H 0.153 0.847 27 H 0.121 0.879 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.970 -15.390 4.924 16.639 hybrid contribution -1.591 1.671 -0.330 2.331 sum 2.380 -13.719 4.594 14.662 Atomic orbital electron populations 1.70038 1.07584 1.28631 1.50005 1.25857 0.95846 1.02863 0.93796 0.85372 0.78256 0.77434 0.79261 1.19322 1.20059 1.19127 1.20951 0.93372 0.90317 1.53001 0.92197 1.20753 0.94044 0.92416 0.98238 1.86756 1.21037 1.01946 1.98044 1.21326 0.97202 0.89599 1.06293 1.20351 1.07191 0.99806 0.92458 1.25237 0.96955 0.91840 1.02912 1.73846 1.21370 1.22866 0.91296 1.84721 1.55476 1.41312 1.15707 1.23613 0.94569 0.88697 0.97043 1.20606 1.10755 0.99670 0.82175 1.23183 0.94858 1.01713 0.99386 1.23226 0.95790 0.98486 1.00704 0.92051 0.96534 0.96228 0.88528 0.88457 0.77248 0.84686 0.87872 0.85914 0.85665 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.48 13.29 21.45 0.28 -53.19 16 2 C 0.02 0.97 5.46 84.65 0.46 1.43 16 3 Si 0.97 43.17 29.54 68.60 2.03 45.19 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -30.38 9.13 25.60 0.23 -30.15 16 8 H 0.06 3.39 7.71 -2.91 -0.02 3.36 16 9 C 0.09 4.82 5.70 71.24 0.41 5.23 16 10 S -0.31 -13.08 21.64 -56.49 -1.22 -14.30 16 11 C 0.00 0.12 6.36 71.24 0.45 0.57 16 12 C -0.19 -5.73 5.58 -19.74 -0.11 -5.84 16 13 C 0.01 0.29 12.16 85.71 1.04 1.33 16 14 N -0.39 -11.64 12.07 -59.28 -0.72 -12.36 16 15 O 0.09 2.54 10.99 71.68 0.79 3.32 16 16 C 0.03 0.74 6.94 25.04 0.17 0.91 16 17 C -0.11 -2.46 6.05 -11.54 -0.07 -2.53 16 18 C -0.15 -2.50 10.19 30.62 0.31 -2.19 16 19 C -0.14 -2.24 10.24 30.62 0.31 -1.93 16 20 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 21 H 0.02 0.89 8.14 -2.39 -0.02 0.88 16 22 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 24 H 0.10 2.94 8.08 -2.39 -0.02 2.92 16 25 H 0.21 4.88 8.06 -2.91 -0.02 4.85 16 26 H 0.14 3.19 8.14 -2.39 -0.02 3.17 16 27 H 0.10 1.67 8.02 -2.39 -0.02 1.65 16 28 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -63.42 283.81 5.51 -57.91 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 1.13 Total: 6.58 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 3.22 Total: -33.16 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: -0.43 Total: -65.55 kcal Atomic # 8 Polarization: 2.54 SS G_CDS: 0.79 Total: 3.32 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -13.08 SS G_CDS: -1.22 Total: -14.30 kcal Total: -63.42 5.51 -57.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413008941.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.831 kcal (2) G-P(sol) polarization free energy of solvation -63.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds