Wall clock time and date at job start Sun Mar 29 2020 22:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34875 * 125.64950 * 2 1 4 4 C 1.35632 * 109.06046 * 180.02562 * 3 2 1 5 5 C 1.39595 * 107.90877 * 359.97438 * 4 3 2 6 6 C 1.37875 * 125.64540 * 180.02562 * 2 1 3 7 7 C 1.41353 * 126.30224 * 359.70318 * 6 2 1 8 8 O 1.21442 * 120.00248 * 359.97438 * 7 6 2 9 9 C 1.50703 * 119.99609 * 180.02562 * 7 6 2 10 10 S 1.81404 * 109.46783 * 179.97438 * 9 7 6 11 11 C 1.81404 * 102.99867 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47278 * 180.02562 * 11 10 9 13 13 H 1.08008 * 119.99805 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00385 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99330 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00233 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47039 * 90.00068 * 16 14 12 18 18 H 1.48493 * 109.47114 * 209.99912 * 16 14 12 19 19 H 1.48500 * 109.46942 * 329.99961 * 16 14 12 20 20 H 1.08992 * 109.47293 * 269.95870 * 1 2 3 21 21 H 1.08993 * 109.46769 * 29.96176 * 1 2 3 22 22 H 1.09003 * 109.46998 * 149.95618 * 1 2 3 23 23 H 1.08002 * 125.46371 * 0.02562 * 3 2 1 24 24 H 1.07999 * 126.04645 * 179.97438 * 4 3 2 25 25 H 1.08002 * 126.53012 * 180.02562 * 5 4 3 26 26 H 1.08993 * 109.47059 * 299.99629 * 9 7 6 27 27 H 1.09002 * 109.47282 * 59.99982 * 9 7 6 28 28 H 1.08998 * 109.46985 * 300.00540 * 11 10 9 29 29 H 1.09001 * 109.46858 * 60.00213 * 11 10 9 30 30 H 0.97003 * 119.99710 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.0960 0.0000 4 6 3.5510 0.7088 -0.0006 5 6 3.5831 -0.6868 -0.0004 6 6 2.2685 -1.1204 -0.0005 7 6 1.8305 -2.4644 0.0048 8 8 0.6424 -2.7158 0.0109 9 6 2.8380 -3.5852 0.0040 10 16 1.9702 -5.1781 0.0124 11 6 3.3271 -6.3820 0.0096 12 6 2.7600 -7.7782 0.0155 13 1 1.6902 -7.9265 0.0208 14 6 3.6068 -8.8664 0.0151 15 7 4.9095 -8.6857 0.0102 16 14 2.9038 -10.5970 0.0230 17 1 2.7117 -11.0596 -1.3749 18 1 3.8437 -11.5098 0.7218 19 1 1.5971 -10.5972 0.7285 20 1 -0.3633 -0.0007 1.0276 21 1 -0.3632 0.8903 -0.5132 22 1 -0.3633 -0.8896 -0.5145 23 1 1.9015 2.1179 0.0004 24 1 4.4094 1.3642 -0.0011 25 1 4.4656 -1.3095 -0.0003 26 1 3.4595 -3.5143 -0.8885 27 1 3.4664 -3.5095 0.8914 28 1 3.9359 -6.2412 -0.8834 29 1 3.9439 -6.2363 0.8965 30 1 5.5053 -9.4512 0.0096 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009512.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:52 Heat of formation + Delta-G solvation = 8.881204 kcal Electronic energy + Delta-G solvation = -13982.105969 eV Core-core repulsion = 11483.782422 eV Total energy + Delta-G solvation = -2498.323547 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.56679 -38.51815 -33.22687 -33.11396 -31.02283 -28.56438 -28.19906 -26.66569 -23.23019 -22.55766 -20.62339 -18.99618 -17.30172 -16.49680 -15.82934 -15.44354 -15.13723 -14.63710 -14.55958 -14.21133 -13.47761 -13.26914 -12.69643 -12.50521 -12.42421 -12.36119 -12.23694 -12.10532 -11.80703 -10.85308 -10.69337 -9.99737 -9.73230 -9.49074 -8.88924 -8.76237 -8.58717 -8.35806 -6.63006 -6.16894 -4.20521 1.10172 2.41165 2.55117 2.76276 3.20872 3.28971 3.34331 3.40382 3.86463 4.35733 4.39864 4.64808 4.81389 5.05463 5.20500 5.23433 5.28715 5.43915 5.48026 5.49923 5.75110 5.95233 6.09234 6.63103 6.84138 7.05695 7.11906 7.13143 7.72834 7.78307 8.04530 8.81498 9.42351 10.94668 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.059729 B = 0.004487 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.670617 B = 6238.369138 C = 6681.288681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.409 5.409 3 C 0.020 3.980 4 C -0.216 4.216 5 C -0.114 4.114 6 C -0.085 4.085 7 C 0.435 3.565 8 O -0.453 6.453 9 C -0.141 4.141 10 S -0.256 6.256 11 C 0.079 3.921 12 C -0.510 4.510 13 H 0.067 0.933 14 C 0.065 3.935 15 N -0.894 5.894 16 Si 0.907 3.093 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.271 1.271 20 H 0.077 0.923 21 H 0.082 0.918 22 H 0.104 0.896 23 H 0.167 0.833 24 H 0.143 0.857 25 H 0.150 0.850 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.135 19.257 -0.117 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.081 5.081 3 C -0.117 4.117 4 C -0.240 4.240 5 C -0.140 4.140 6 C -0.195 4.195 7 C 0.314 3.686 8 O -0.329 6.329 9 C -0.290 4.290 10 S -0.030 6.030 11 C -0.068 4.068 12 C -0.550 4.550 13 H 0.086 0.914 14 C -0.138 4.138 15 N -0.532 5.532 16 Si 0.734 3.266 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.195 1.195 20 H 0.096 0.904 21 H 0.101 0.899 22 H 0.123 0.877 23 H 0.185 0.815 24 H 0.161 0.839 25 H 0.168 0.832 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.092 18.807 -0.102 19.484 hybrid contribution 1.306 -0.529 0.009 1.409 sum -3.786 18.278 -0.093 18.666 Atomic orbital electron populations 1.22330 0.76107 1.05304 1.04095 1.43949 1.06941 1.05402 1.51855 1.22009 0.91001 0.91700 1.07001 1.20888 0.95939 0.95261 1.11914 1.21666 0.94881 0.95338 1.02162 1.19832 0.91045 0.88745 1.19926 1.19639 0.89551 0.87038 0.72342 1.90553 1.18581 1.86504 1.37290 1.23636 1.01881 0.97026 1.06452 1.87094 1.20073 0.97760 1.98044 1.21138 0.91818 0.93754 1.00123 1.20663 0.93688 0.88512 1.52111 0.91442 1.24957 0.94722 0.99502 0.94666 1.69957 1.02139 1.31286 1.49825 0.86344 0.78985 0.82957 0.78349 1.20350 1.20992 1.19521 0.90419 0.89926 0.87743 0.81531 0.83916 0.83236 0.87505 0.87504 0.94569 0.94559 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 10.52 59.85 0.63 1.24 16 2 N -0.41 -4.90 3.15 -121.91 -0.38 -5.29 16 3 C 0.02 0.20 11.34 -17.15 -0.19 0.00 16 4 C -0.22 -2.23 10.81 -40.01 -0.43 -2.66 16 5 C -0.11 -1.39 10.31 -39.01 -0.40 -1.79 16 6 C -0.08 -1.20 6.70 -83.89 -0.56 -1.76 16 7 C 0.44 7.32 6.96 -33.12 -0.23 7.09 16 8 O -0.45 -8.68 14.03 5.42 0.08 -8.61 16 9 C -0.14 -2.46 5.68 36.01 0.20 -2.26 16 10 S -0.26 -5.91 20.79 -107.50 -2.24 -8.14 16 11 C 0.08 2.07 5.70 36.00 0.21 2.28 16 12 C -0.51 -14.67 9.13 -34.44 -0.31 -14.98 16 13 H 0.07 1.95 7.71 -52.48 -0.40 1.55 16 14 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 15 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 16 Si 0.91 21.64 29.54 -169.99 -5.02 16.62 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 20 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 21 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.10 1.23 6.28 -51.93 -0.33 0.91 16 23 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 24 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 25 H 0.15 1.58 7.93 -52.49 -0.42 1.16 16 26 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 27 H 0.11 1.70 8.14 -51.92 -0.42 1.28 16 28 H 0.04 0.98 8.14 -51.92 -0.42 0.55 16 29 H 0.04 0.98 8.14 -51.92 -0.42 0.56 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 279.92 15.07 4.22 4.22 Total: -1.00 -32.72 279.92 -7.47 -40.18 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -3.66 Total: -2.48 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -1.19 Total: -11.09 kcal Atomic # 7 Polarization: -31.05 SS G_CDS: 0.35 Total: -30.69 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.08 Total: -8.61 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -5.91 SS G_CDS: -2.24 Total: -8.14 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.72 -7.47 -40.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009512.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.064 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds