Wall clock time and date at job start Sun Mar 29 2020 22:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34875 * 125.64950 * 2 1 4 4 C 1.35632 * 109.06046 * 180.02562 * 3 2 1 5 5 C 1.39595 * 107.90877 * 359.97438 * 4 3 2 6 6 C 1.37875 * 125.64540 * 180.02562 * 2 1 3 7 7 C 1.41353 * 126.30224 * 359.70318 * 6 2 1 8 8 O 1.21442 * 120.00248 * 359.97438 * 7 6 2 9 9 C 1.50703 * 119.99609 * 180.02562 * 7 6 2 10 10 S 1.81404 * 109.46783 * 179.97438 * 9 7 6 11 11 C 1.81404 * 102.99867 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47278 * 180.02562 * 11 10 9 13 13 H 1.08008 * 119.99805 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00385 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99330 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00233 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47039 * 90.00068 * 16 14 12 18 18 H 1.48493 * 109.47114 * 209.99912 * 16 14 12 19 19 H 1.48500 * 109.46942 * 329.99961 * 16 14 12 20 20 H 1.08992 * 109.47293 * 269.95870 * 1 2 3 21 21 H 1.08993 * 109.46769 * 29.96176 * 1 2 3 22 22 H 1.09003 * 109.46998 * 149.95618 * 1 2 3 23 23 H 1.08002 * 125.46371 * 0.02562 * 3 2 1 24 24 H 1.07999 * 126.04645 * 179.97438 * 4 3 2 25 25 H 1.08002 * 126.53012 * 180.02562 * 5 4 3 26 26 H 1.08993 * 109.47059 * 299.99629 * 9 7 6 27 27 H 1.09002 * 109.47282 * 59.99982 * 9 7 6 28 28 H 1.08998 * 109.46985 * 300.00540 * 11 10 9 29 29 H 1.09001 * 109.46858 * 60.00213 * 11 10 9 30 30 H 0.97003 * 119.99710 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.0960 0.0000 4 6 3.5510 0.7088 -0.0006 5 6 3.5831 -0.6868 -0.0004 6 6 2.2685 -1.1204 -0.0005 7 6 1.8305 -2.4644 0.0048 8 8 0.6424 -2.7158 0.0109 9 6 2.8380 -3.5852 0.0040 10 16 1.9702 -5.1781 0.0124 11 6 3.3271 -6.3820 0.0096 12 6 2.7600 -7.7782 0.0155 13 1 1.6902 -7.9265 0.0208 14 6 3.6068 -8.8664 0.0151 15 7 4.9095 -8.6857 0.0102 16 14 2.9038 -10.5970 0.0230 17 1 2.7117 -11.0596 -1.3749 18 1 3.8437 -11.5098 0.7218 19 1 1.5971 -10.5972 0.7285 20 1 -0.3633 -0.0007 1.0276 21 1 -0.3632 0.8903 -0.5132 22 1 -0.3633 -0.8896 -0.5145 23 1 1.9015 2.1179 0.0004 24 1 4.4094 1.3642 -0.0011 25 1 4.4656 -1.3095 -0.0003 26 1 3.4595 -3.5143 -0.8885 27 1 3.4664 -3.5095 0.8914 28 1 3.9359 -6.2412 -0.8834 29 1 3.9439 -6.2363 0.8965 30 1 5.5053 -9.4512 0.0096 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413009512.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:52 Heat of formation + Delta-G solvation = -10.535516 kcal Electronic energy + Delta-G solvation = -13982.947942 eV Core-core repulsion = 11483.782422 eV Total energy + Delta-G solvation = -2499.165519 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.48142 -39.77164 -35.29269 -34.09568 -32.21672 -30.65909 -29.39468 -27.45396 -25.26994 -23.76234 -21.46457 -20.04114 -18.65474 -18.31234 -17.27127 -16.88297 -16.39627 -16.18199 -15.73268 -15.64058 -14.55511 -14.45915 -14.30082 -14.20340 -14.09007 -13.50098 -13.25547 -13.19383 -12.93665 -12.73284 -12.57986 -12.03994 -11.61762 -10.93164 -10.74519 -10.67905 -9.74154 -9.26991 -8.51627 -8.33702 -6.46471 0.01716 0.79815 1.40337 1.41628 1.54153 1.69275 1.85679 1.99186 2.16031 2.37280 3.01008 3.14677 3.93986 4.10930 4.14325 4.22150 4.32737 4.37163 4.45311 4.54558 4.70883 4.93691 4.94947 5.14728 5.26001 5.56959 5.77027 5.88915 5.92740 6.29157 6.51461 6.60129 7.21285 8.78513 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.059729 B = 0.004487 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.670617 B = 6238.369138 C = 6681.288681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.417 5.417 3 C 0.045 3.955 4 C -0.226 4.226 5 C -0.109 4.109 6 C -0.130 4.130 7 C 0.437 3.563 8 O -0.492 6.492 9 C -0.127 4.127 10 S -0.288 6.288 11 C 0.088 3.912 12 C -0.539 4.539 13 H 0.058 0.942 14 C 0.017 3.983 15 N -0.923 5.923 16 Si 0.976 3.024 17 H -0.268 1.268 18 H -0.273 1.273 19 H -0.268 1.268 20 H 0.081 0.919 21 H 0.120 0.880 22 H 0.076 0.924 23 H 0.211 0.789 24 H 0.170 0.830 25 H 0.160 0.840 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.929 21.159 -0.139 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.089 5.089 3 C -0.094 4.094 4 C -0.249 4.249 5 C -0.135 4.135 6 C -0.240 4.240 7 C 0.320 3.680 8 O -0.372 6.372 9 C -0.276 4.276 10 S -0.062 6.062 11 C -0.060 4.060 12 C -0.578 4.578 13 H 0.076 0.924 14 C -0.184 4.184 15 N -0.562 5.562 16 Si 0.799 3.201 17 H -0.193 1.193 18 H -0.197 1.197 19 H -0.192 1.192 20 H 0.100 0.900 21 H 0.139 0.861 22 H 0.095 0.905 23 H 0.228 0.772 24 H 0.188 0.812 25 H 0.177 0.823 26 H 0.142 0.858 27 H 0.142 0.858 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.875 20.706 -0.126 21.273 hybrid contribution 1.303 -0.881 0.016 1.573 sum -3.572 19.825 -0.110 20.144 Atomic orbital electron populations 1.22423 0.75224 1.05810 1.04547 1.44187 1.07741 1.05341 1.51660 1.22818 0.90632 0.92769 1.03163 1.21307 0.97337 0.94587 1.11703 1.22001 0.94382 0.96783 1.00371 1.19499 0.92326 0.88124 1.24028 1.19662 0.88669 0.88078 0.71575 1.90544 1.19615 1.86993 1.40058 1.23730 1.02062 0.93644 1.08128 1.87057 1.20108 1.00859 1.98131 1.20817 0.92339 0.94401 0.98417 1.20966 0.93515 0.90180 1.53144 0.92356 1.25875 0.95019 1.03773 0.93691 1.70047 1.03323 1.32848 1.49942 0.85278 0.78369 0.77597 0.78817 1.19347 1.19743 1.19248 0.90003 0.86140 0.90489 0.77215 0.81208 0.82280 0.85826 0.85840 0.96151 0.96152 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.08 10.52 127.77 1.34 2.42 16 2 N -0.42 -9.08 3.15 -539.63 -1.70 -10.78 16 3 C 0.04 0.68 11.34 83.62 0.95 1.63 16 4 C -0.23 -3.82 10.81 21.99 0.24 -3.58 16 5 C -0.11 -2.41 10.31 22.64 0.23 -2.18 16 6 C -0.13 -3.55 6.70 39.00 0.26 -3.29 16 7 C 0.44 14.88 6.96 26.45 0.18 15.07 16 8 O -0.49 -19.52 14.03 -3.53 -0.05 -19.57 16 9 C -0.13 -4.47 5.68 71.24 0.40 -4.07 16 10 S -0.29 -13.73 20.79 -56.49 -1.17 -14.91 16 11 C 0.09 4.79 5.70 71.24 0.41 5.20 16 12 C -0.54 -31.82 9.13 25.60 0.23 -31.59 16 13 H 0.06 3.47 7.71 -2.91 -0.02 3.45 16 14 C 0.02 1.00 5.46 84.65 0.46 1.46 16 15 N -0.92 -54.56 13.29 21.45 0.28 -54.27 16 16 Si 0.98 44.50 29.54 68.60 2.03 46.52 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.08 1.84 6.28 -2.39 -0.01 1.83 16 23 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 24 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 25 H 0.16 3.05 7.93 -2.91 -0.02 3.03 16 26 H 0.12 3.92 8.14 -2.39 -0.02 3.90 16 27 H 0.12 3.92 8.14 -2.39 -0.02 3.90 16 28 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -72.58 279.92 5.23 -67.35 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.13 Total: 4.57 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 4.72 Total: -18.93 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: -1.41 Total: -65.05 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.05 Total: -19.57 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: -13.73 SS G_CDS: -1.17 Total: -14.91 kcal Total: -72.58 5.23 -67.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009512.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.818 kcal (2) G-P(sol) polarization free energy of solvation -72.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds