Wall clock time and date at job start Sun Mar 29 2020 22:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99873 * 2 1 4 4 H 1.48505 * 109.46908 * 269.99647 * 3 2 1 5 5 H 1.48495 * 109.47262 * 29.99388 * 3 2 1 6 6 H 1.48498 * 109.47222 * 149.99859 * 3 2 1 7 7 C 1.37872 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00120 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00047 * 180.02562 * 7 2 1 10 10 S 1.81400 * 109.47311 * 180.02562 * 9 7 2 11 11 C 1.81397 * 103.00241 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47552 * 180.02562 * 11 10 9 13 13 N 1.30834 * 125.96114 * 270.30811 * 12 11 10 14 14 C 1.33243 * 109.83049 * 180.12133 * 13 12 11 15 15 C 1.50701 * 125.52543 * 179.85490 * 14 13 12 16 16 C 1.53000 * 117.49727 * 119.71430 * 15 14 13 17 17 C 1.53002 * 60.02940 * 107.49982 * 16 15 14 18 18 N 1.30709 * 108.94361 * 359.58237 * 14 13 12 19 19 N 1.34429 * 125.96151 * 89.97247 * 12 11 10 20 20 H 0.96996 * 126.82852 * 359.97438 * 19 12 11 21 21 H 0.96997 * 119.99834 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47636 * 59.99929 * 9 7 2 23 23 H 1.09007 * 109.47270 * 299.99939 * 9 7 2 24 24 H 1.09001 * 109.47560 * 59.99642 * 11 10 9 25 25 H 1.09004 * 109.46872 * 299.99903 * 11 10 9 26 26 H 1.08999 * 115.54923 * 334.04629 * 15 14 13 27 27 H 1.09002 * 117.49833 * 215.00087 * 16 15 14 28 28 H 1.09002 * 117.49953 * 0.02562 * 16 15 14 29 29 H 1.09000 * 117.49996 * 107.50493 * 17 16 15 30 30 H 1.08999 * 117.49664 * 252.51862 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 16 4.1163 -2.9042 0.0010 11 6 5.9187 -2.6998 0.0025 12 6 6.5780 -4.0549 0.0019 13 7 6.9083 -4.7491 1.0606 14 6 7.4727 -5.8978 0.6899 15 6 7.9882 -6.9618 1.6243 16 6 7.3571 -8.3523 1.5284 17 6 8.7778 -8.1203 1.0099 18 7 7.5016 -5.9545 -0.6157 19 7 6.9238 -4.7641 -1.0865 20 1 6.7982 -4.5056 -2.0129 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6800 0.8910 23 1 3.8753 -0.6804 -0.8889 24 1 6.2211 -2.1486 0.8929 25 1 6.2225 -2.1480 -0.8871 26 1 8.2912 -6.6136 2.6118 27 1 7.2450 -8.9189 2.4528 28 1 6.5693 -8.4975 0.7892 29 1 9.6003 -8.5344 1.5931 30 1 8.9243 -8.1125 -0.0702 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413010472.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:26 Heat of formation + Delta-G solvation = 102.703578 kcal Electronic energy + Delta-G solvation = -13795.417982 eV Core-core repulsion = 11333.455630 eV Total energy + Delta-G solvation = -2461.962353 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.16122 -37.32584 -33.12334 -32.56751 -32.35155 -29.48855 -28.05630 -24.58346 -22.73539 -22.53380 -21.06477 -19.90805 -18.06514 -17.00905 -16.15020 -15.69072 -15.32859 -14.87277 -14.22247 -14.08237 -13.61812 -13.26414 -12.63459 -12.40372 -12.27466 -11.95955 -11.69802 -11.28003 -10.88865 -10.73596 -10.68062 -10.26850 -10.00517 -9.89700 -9.76520 -9.32542 -9.07228 -8.78669 -7.00535 -6.24783 -4.28331 1.30351 2.20958 2.58236 2.98257 3.15691 3.23480 3.23767 3.42407 3.70537 3.87726 4.24228 4.48355 4.57835 4.73425 4.84639 4.99606 5.06012 5.44123 5.46209 5.51251 5.62046 5.92263 5.96037 6.22182 6.38342 6.44267 6.57628 7.00252 7.32524 8.10023 8.22046 8.77188 9.29715 10.87148 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.059525 B = 0.004315 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.276243 B = 6487.973709 C = 6659.672971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.081 3.919 3 Si 0.879 3.121 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.084 0.916 9 C 0.045 3.955 10 S -0.230 6.230 11 C -0.038 4.038 12 C 0.319 3.681 13 N -0.524 5.524 14 C 0.257 3.743 15 C -0.070 4.070 16 C -0.158 4.158 17 C -0.162 4.162 18 N -0.317 5.317 19 N -0.475 5.475 20 H 0.442 0.558 21 H 0.269 0.731 22 H 0.040 0.960 23 H 0.033 0.967 24 H 0.114 0.886 25 H 0.099 0.901 26 H 0.131 0.869 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.884 -9.540 0.017 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.124 4.124 3 Si 0.705 3.295 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.102 0.898 9 C -0.103 4.103 10 S -0.005 6.005 11 C -0.188 4.188 12 C 0.040 3.960 13 N -0.254 5.254 14 C -0.025 4.025 15 C -0.091 4.091 16 C -0.197 4.197 17 C -0.200 4.200 18 N -0.146 5.146 19 N -0.193 5.193 20 H 0.288 0.712 21 H 0.079 0.921 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.133 0.867 25 H 0.117 0.883 26 H 0.149 0.851 27 H 0.123 0.877 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.408 -10.860 -0.006 19.676 hybrid contribution 0.754 2.511 -0.691 2.711 sum 17.161 -8.349 -0.697 19.097 Atomic orbital electron populations 1.69861 1.06180 1.27428 1.49125 1.24847 0.94763 0.98732 0.94026 0.86798 0.80356 0.83528 0.78795 1.19871 1.20699 1.18964 1.20413 0.86685 0.95405 1.53149 0.89782 1.21519 1.01294 0.87973 0.99494 1.87221 0.96204 1.19140 1.97932 1.21790 0.99169 0.90699 1.07134 1.23393 0.94624 0.95075 0.82879 1.70310 1.20157 1.05681 1.29212 1.23142 0.96518 0.93449 0.89412 1.20055 1.05341 0.85827 0.97884 1.23039 0.96703 0.96337 1.03599 1.23044 0.94969 1.00037 1.01951 1.77866 1.22133 1.02459 1.12186 1.47893 1.47264 1.14033 1.10095 0.71208 0.92091 0.94163 0.94873 0.86749 0.88288 0.85087 0.87706 0.88451 0.87940 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.96 55.43 0.77 -25.59 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.88 20.23 27.47 -169.99 -4.67 15.56 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 7 C -0.52 -14.35 9.68 -34.44 -0.33 -14.68 16 8 H 0.08 2.58 7.96 -52.49 -0.42 2.17 16 9 C 0.05 1.03 4.77 36.01 0.17 1.20 16 10 S -0.23 -4.64 21.64 -107.50 -2.33 -6.97 16 11 C -0.04 -0.57 6.57 36.01 0.24 -0.33 16 12 C 0.32 4.94 7.50 -155.69 -1.17 3.78 16 13 N -0.52 -8.86 11.19 -8.16 -0.09 -8.95 16 14 C 0.26 3.88 7.69 -156.85 -1.21 2.68 16 15 C -0.07 -0.81 6.33 -91.74 -0.58 -1.39 16 16 C -0.16 -1.53 10.23 -26.73 -0.27 -1.80 16 17 C -0.16 -1.47 10.14 -26.69 -0.27 -1.74 16 18 N -0.32 -4.72 12.34 32.42 0.40 -4.32 16 19 N -0.47 -6.52 7.45 32.62 0.24 -6.28 16 20 H 0.44 4.64 8.96 -182.34 -1.63 3.00 16 21 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 22 H 0.04 0.90 7.20 -51.93 -0.37 0.53 16 23 H 0.03 0.71 7.57 -51.92 -0.39 0.32 16 24 H 0.11 1.65 8.14 -51.92 -0.42 1.23 16 25 H 0.10 1.20 8.14 -51.92 -0.42 0.78 16 26 H 0.13 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.02 7.88 -51.93 -0.41 0.61 16 LS Contribution 279.89 15.07 4.22 4.22 Total: -1.00 -31.85 279.89 -9.90 -41.76 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.93 Total: 0.69 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -3.52 Total: -10.12 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 1.33 Total: -45.14 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.67 Total: 15.56 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -2.33 Total: -6.97 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.85 -9.90 -41.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010472.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.462 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds