Wall clock time and date at job start Sun Mar 29 2020 22:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99873 * 2 1 4 4 H 1.48505 * 109.46908 * 269.99647 * 3 2 1 5 5 H 1.48495 * 109.47262 * 29.99388 * 3 2 1 6 6 H 1.48498 * 109.47222 * 149.99859 * 3 2 1 7 7 C 1.37872 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00120 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00047 * 180.02562 * 7 2 1 10 10 S 1.81400 * 109.47311 * 180.02562 * 9 7 2 11 11 C 1.81397 * 103.00241 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47552 * 180.02562 * 11 10 9 13 13 N 1.30834 * 125.96114 * 270.30811 * 12 11 10 14 14 C 1.33243 * 109.83049 * 180.12133 * 13 12 11 15 15 C 1.50701 * 125.52543 * 179.85490 * 14 13 12 16 16 C 1.53000 * 117.49727 * 119.71430 * 15 14 13 17 17 C 1.53002 * 60.02940 * 107.49982 * 16 15 14 18 18 N 1.30709 * 108.94361 * 359.58237 * 14 13 12 19 19 N 1.34429 * 125.96151 * 89.97247 * 12 11 10 20 20 H 0.96996 * 126.82852 * 359.97438 * 19 12 11 21 21 H 0.96997 * 119.99834 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47636 * 59.99929 * 9 7 2 23 23 H 1.09007 * 109.47270 * 299.99939 * 9 7 2 24 24 H 1.09001 * 109.47560 * 59.99642 * 11 10 9 25 25 H 1.09004 * 109.46872 * 299.99903 * 11 10 9 26 26 H 1.08999 * 115.54923 * 334.04629 * 15 14 13 27 27 H 1.09002 * 117.49833 * 215.00087 * 16 15 14 28 28 H 1.09002 * 117.49953 * 0.02562 * 16 15 14 29 29 H 1.09000 * 117.49996 * 107.50493 * 17 16 15 30 30 H 1.08999 * 117.49664 * 252.51862 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 16 4.1163 -2.9042 0.0010 11 6 5.9187 -2.6998 0.0025 12 6 6.5780 -4.0549 0.0019 13 7 6.9083 -4.7491 1.0606 14 6 7.4727 -5.8978 0.6899 15 6 7.9882 -6.9618 1.6243 16 6 7.3571 -8.3523 1.5284 17 6 8.7778 -8.1203 1.0099 18 7 7.5016 -5.9545 -0.6157 19 7 6.9238 -4.7641 -1.0865 20 1 6.7982 -4.5056 -2.0129 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6800 0.8910 23 1 3.8753 -0.6804 -0.8889 24 1 6.2211 -2.1486 0.8929 25 1 6.2225 -2.1480 -0.8871 26 1 8.2912 -6.6136 2.6118 27 1 7.2450 -8.9189 2.4528 28 1 6.5693 -8.4975 0.7892 29 1 9.6003 -8.5344 1.5931 30 1 8.9243 -8.1125 -0.0702 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413010472.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:26 Heat of formation + Delta-G solvation = 82.555169 kcal Electronic energy + Delta-G solvation = -13796.291683 eV Core-core repulsion = 11333.455630 eV Total energy + Delta-G solvation = -2462.836053 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.29803 -38.13805 -35.20118 -33.69743 -33.52085 -31.46849 -29.25712 -25.55568 -24.71036 -23.27333 -22.26056 -20.91317 -19.29455 -18.97387 -17.53052 -16.80312 -16.57223 -16.04145 -15.85108 -15.29068 -15.06387 -14.81018 -14.23528 -14.12794 -13.17588 -13.15036 -12.64755 -12.54406 -12.37605 -12.14319 -12.06337 -11.77342 -11.48019 -11.15963 -11.07726 -10.88077 -10.78948 -10.32011 -8.61133 -8.36308 -6.47251 0.02383 0.94669 1.37268 1.39871 1.50145 1.52523 1.76800 1.88513 2.31381 2.69523 2.97349 3.00310 3.44731 3.56026 3.88486 4.03171 4.12030 4.37501 4.43997 4.61956 4.77282 4.77578 4.87755 5.07661 5.16513 5.25525 5.30283 5.33358 5.99896 6.06609 6.57440 6.95825 7.15479 8.79750 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.059525 B = 0.004315 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.276243 B = 6487.973709 C = 6659.672971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.018 3.982 3 Si 0.956 3.044 4 H -0.259 1.259 5 H -0.282 1.282 6 H -0.239 1.239 7 C -0.533 4.533 8 H 0.032 0.968 9 C 0.051 3.949 10 S -0.274 6.274 11 C -0.016 4.016 12 C 0.310 3.690 13 N -0.553 5.553 14 C 0.247 3.753 15 C -0.095 4.095 16 C -0.155 4.155 17 C -0.142 4.142 18 N -0.326 5.326 19 N -0.464 5.464 20 H 0.455 0.545 21 H 0.273 0.727 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.125 0.875 25 H 0.136 0.864 26 H 0.142 0.858 27 H 0.128 0.872 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.705 -8.936 0.023 21.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.182 4.182 3 Si 0.778 3.222 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.162 1.162 7 C -0.571 4.571 8 H 0.051 0.949 9 C -0.097 4.097 10 S -0.050 6.050 11 C -0.166 4.166 12 C 0.031 3.969 13 N -0.283 5.283 14 C -0.035 4.035 15 C -0.116 4.116 16 C -0.193 4.193 17 C -0.180 4.180 18 N -0.156 5.156 19 N -0.184 5.184 20 H 0.304 0.696 21 H 0.082 0.918 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.144 0.856 25 H 0.154 0.846 26 H 0.159 0.841 27 H 0.147 0.853 28 H 0.098 0.902 29 H 0.149 0.851 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 19.237 -10.274 -0.023 21.809 hybrid contribution -0.120 2.160 -0.705 2.275 sum 19.118 -8.114 -0.728 20.781 Atomic orbital electron populations 1.70031 1.08504 1.28840 1.50739 1.25940 0.95659 1.03395 0.93171 0.85580 0.79615 0.77306 0.79718 1.18380 1.20718 1.16173 1.20642 0.89601 0.93735 1.53167 0.94941 1.21300 0.97967 0.89820 1.00640 1.87319 1.01683 1.17824 1.98141 1.21785 0.94187 0.91056 1.09582 1.23392 0.95038 0.95280 0.83212 1.70294 1.20987 1.06676 1.30332 1.23803 0.96069 0.93691 0.89914 1.20316 1.07314 0.85856 0.98103 1.23110 0.96770 0.95149 1.04276 1.23120 0.95401 0.97808 1.01682 1.77834 1.22545 1.02877 1.12383 1.47866 1.46499 1.13454 1.10611 0.69628 0.91836 0.93175 0.92767 0.85635 0.84599 0.84062 0.85346 0.90160 0.85053 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.53 13.96 21.45 0.30 -57.23 16 2 C 0.02 1.02 5.47 84.65 0.46 1.49 16 3 Si 0.96 40.76 27.47 68.60 1.88 42.65 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.24 -9.09 6.54 99.48 0.65 -8.44 16 7 C -0.53 -30.17 9.68 25.60 0.25 -29.92 16 8 H 0.03 2.11 7.96 -2.91 -0.02 2.09 16 9 C 0.05 2.25 4.77 71.24 0.34 2.59 16 10 S -0.27 -10.90 21.64 -56.49 -1.22 -12.12 16 11 C -0.02 -0.44 6.57 71.24 0.47 0.02 16 12 C 0.31 9.07 7.50 138.23 1.04 10.11 16 13 N -0.55 -18.08 11.19 -179.73 -2.01 -20.09 16 14 C 0.25 7.22 7.69 138.63 1.07 8.28 16 15 C -0.10 -2.05 6.33 -11.52 -0.07 -2.12 16 16 C -0.15 -2.73 10.23 30.60 0.31 -2.42 16 17 C -0.14 -2.26 10.14 30.62 0.31 -1.95 16 18 N -0.33 -9.36 12.34 -51.33 -0.63 -9.99 16 19 N -0.46 -12.02 7.45 -50.71 -0.38 -12.40 16 20 H 0.46 8.70 8.96 -213.10 -1.91 6.79 16 21 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 22 H 0.05 2.11 7.20 -2.39 -0.02 2.10 16 23 H 0.05 2.17 7.57 -2.39 -0.02 2.15 16 24 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 25 H 0.14 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.14 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 1.68 7.88 -2.39 -0.02 1.66 16 Total: -1.00 -71.26 279.89 1.30 -69.96 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -0.81 Total: 13.15 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 4.17 Total: -13.93 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -2.72 Total: -99.71 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.88 Total: 42.65 kcal Atomic # 16 Polarization: -10.90 SS G_CDS: -1.22 Total: -12.12 kcal Total: -71.26 1.30 -69.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010472.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.511 kcal (2) G-P(sol) polarization free energy of solvation -71.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds