Wall clock time and date at job start Sun Mar 29 2020 22:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35684 * 117.00132 * 2 1 4 4 C 1.38908 * 119.68488 * 180.02562 * 3 2 1 5 5 C 1.38378 * 119.11397 * 179.97438 * 4 3 2 6 6 C 1.38835 * 118.48135 * 359.73227 * 5 4 3 7 7 C 1.38048 * 119.28976 * 0.53167 * 6 5 4 8 8 C 1.50700 * 119.58359 * 179.73393 * 7 6 5 9 9 S 1.81394 * 109.46854 * 269.72649 * 8 7 6 10 10 C 1.81399 * 102.99894 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47147 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00275 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99709 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00040 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99653 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46942 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46979 * 120.00266 * 15 13 11 18 18 H 1.48500 * 109.46999 * 240.00165 * 15 13 11 19 19 N 1.31966 * 120.83150 * 359.45273 * 7 6 5 20 20 H 1.09000 * 109.47134 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47145 * 300.00774 * 1 2 3 22 22 H 1.09001 * 109.46992 * 59.99852 * 1 2 3 23 23 H 1.07998 * 120.45029 * 359.95280 * 4 3 2 24 24 H 1.08002 * 120.76452 * 180.02562 * 5 4 3 25 25 H 1.08001 * 120.35721 * 180.26039 * 6 5 4 26 26 H 1.09002 * 109.46755 * 149.72574 * 8 7 6 27 27 H 1.08998 * 109.46859 * 29.72340 * 8 7 6 28 28 H 1.09001 * 109.47190 * 299.99732 * 10 9 8 29 29 H 1.09004 * 109.47089 * 59.99865 * 10 9 8 30 30 H 0.97006 * 119.99966 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0485 2.5131 -0.0011 6 6 3.2504 3.6492 -0.0068 7 6 1.8770 3.5097 -0.0005 8 6 1.0045 4.7384 -0.0005 9 16 0.6550 5.2318 1.7097 10 6 -0.3880 6.7018 1.5053 11 6 -0.7697 7.2393 2.8605 12 1 -0.4195 6.7463 3.7552 13 6 -1.5652 8.3613 2.9580 14 7 -1.9913 8.9620 1.8685 15 14 -2.0389 9.0272 4.6378 16 1 -1.4361 8.1766 5.6953 17 1 -1.5391 10.4186 4.7776 18 1 -3.5174 9.0160 4.7757 19 7 1.3186 2.3141 0.0000 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 4.0229 0.3696 -0.0002 24 1 5.1254 2.5947 -0.0019 25 1 3.6992 4.6315 -0.0116 26 1 0.0683 4.5192 -0.5140 27 1 1.5196 5.5498 -0.5147 28 1 0.1623 7.4639 0.9536 29 1 -1.2894 6.4339 0.9540 30 1 -2.5506 9.7516 1.9371 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413012010.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:59 Heat of formation + Delta-G solvation = -13.192367 kcal Electronic energy + Delta-G solvation = -13934.109837 eV Core-core repulsion = 11434.829108 eV Total energy + Delta-G solvation = -2499.280729 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.55817 -37.94995 -33.15701 -32.94525 -31.61860 -28.61158 -28.18864 -26.55604 -23.20413 -22.90134 -22.07402 -18.15515 -16.87900 -16.40747 -16.01871 -15.94687 -15.30925 -14.60792 -14.43281 -14.12521 -13.47720 -13.09726 -12.89265 -12.50873 -12.37923 -12.11571 -11.85713 -11.67673 -11.16270 -10.89995 -10.69408 -10.19226 -9.74127 -9.66246 -9.45794 -8.88301 -8.62711 -8.33196 -6.69467 -6.20325 -4.24412 1.05671 1.34743 2.64612 3.10985 3.24886 3.32091 3.38609 3.81246 3.94206 4.21716 4.35393 4.77531 5.05475 5.12469 5.17055 5.24035 5.32880 5.36504 5.52171 5.60524 5.69377 5.96229 6.03917 6.21858 6.45936 7.08082 7.10277 7.24701 7.74505 7.96058 7.99966 8.77645 9.38698 10.91019 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.039966 B = 0.004754 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.422867 B = 5888.859085 C = 6189.969958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.312 6.312 3 C 0.321 3.679 4 C -0.199 4.199 5 C -0.041 4.041 6 C -0.195 4.195 7 C 0.200 3.800 8 C -0.051 4.051 9 S -0.283 6.283 10 C 0.088 3.912 11 C -0.511 4.511 12 H 0.068 0.932 13 C 0.065 3.935 14 N -0.893 5.893 15 Si 0.907 3.093 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.281 1.281 19 N -0.528 5.528 20 H 0.093 0.907 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.138 0.862 24 H 0.141 0.859 25 H 0.140 0.860 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.893 -13.204 -5.854 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.219 6.219 3 C 0.141 3.859 4 C -0.221 4.221 5 C -0.066 4.066 6 C -0.217 4.217 7 C 0.063 3.937 8 C -0.199 4.199 9 S -0.055 6.055 10 C -0.058 4.058 11 C -0.551 4.551 12 H 0.086 0.914 13 C -0.138 4.138 14 N -0.531 5.531 15 Si 0.733 3.267 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.207 1.207 19 N -0.253 5.253 20 H 0.111 0.889 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.156 0.844 24 H 0.159 0.841 25 H 0.158 0.842 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.292 -13.868 -4.995 16.912 hybrid contribution -0.153 1.196 -0.323 1.248 sum 8.139 -12.672 -5.318 15.972 Atomic orbital electron populations 1.22855 0.77154 1.02624 1.02932 1.86202 1.23031 1.24634 1.88035 1.19781 0.89302 0.84597 0.92218 1.20991 0.91971 0.99488 1.09624 1.21354 1.00403 0.91127 0.93749 1.21811 0.93834 1.00253 1.05818 1.20215 0.91392 0.90586 0.91476 1.22142 1.01655 0.95381 1.00684 1.86867 1.69949 1.41915 1.06815 1.21109 0.94584 0.88800 1.01347 1.20705 1.31764 1.11516 0.91075 0.91423 1.24960 0.95343 0.96071 0.97461 1.69961 1.35017 1.20406 1.27720 0.86293 0.78285 0.78768 0.83306 1.19412 1.20710 1.20712 1.67056 1.40972 0.98247 1.18977 0.88863 0.91891 0.92330 0.84383 0.84109 0.84226 0.88956 0.88902 0.94463 0.94472 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.38 101.05 1.05 1.51 16 2 O -0.31 -4.29 10.48 -18.76 -0.20 -4.49 16 3 C 0.32 4.78 7.49 -17.12 -0.13 4.65 16 4 C -0.20 -2.45 10.04 -39.28 -0.39 -2.85 16 5 C -0.04 -0.46 10.17 -39.31 -0.40 -0.86 16 6 C -0.20 -2.65 9.73 -39.43 -0.38 -3.03 16 7 C 0.20 3.27 6.04 -82.60 -0.50 2.77 16 8 C -0.05 -0.89 6.22 36.01 0.22 -0.67 16 9 S -0.28 -6.28 21.64 -107.50 -2.33 -8.61 16 10 C 0.09 2.30 5.70 36.01 0.21 2.51 16 11 C -0.51 -14.47 9.13 -34.44 -0.31 -14.79 16 12 H 0.07 1.93 7.71 -52.49 -0.40 1.52 16 13 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 14 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 15 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 N -0.53 -8.84 9.13 -9.55 -0.09 -8.92 16 20 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 21 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 22 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 23 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 24 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 25 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 26 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 27 H 0.09 1.47 8.07 -51.93 -0.42 1.05 16 28 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 29 H 0.04 1.01 8.14 -51.92 -0.42 0.58 16 30 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 282.79 15.07 4.26 4.26 Total: -1.00 -31.00 282.79 -7.13 -38.13 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -3.76 Total: -2.52 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -0.74 Total: -9.03 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.65 Total: -34.11 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.20 Total: -4.49 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -6.28 SS G_CDS: -2.33 Total: -8.61 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.00 -7.13 -38.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413012010.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.934 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds