Wall clock time and date at job start Sun Mar 29 2020 22:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35684 * 117.00132 * 2 1 4 4 C 1.38908 * 119.68488 * 180.02562 * 3 2 1 5 5 C 1.38378 * 119.11397 * 179.97438 * 4 3 2 6 6 C 1.38835 * 118.48135 * 359.73227 * 5 4 3 7 7 C 1.38048 * 119.28976 * 0.53167 * 6 5 4 8 8 C 1.50700 * 119.58359 * 179.73393 * 7 6 5 9 9 S 1.81394 * 109.46854 * 269.72649 * 8 7 6 10 10 C 1.81399 * 102.99894 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47147 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00275 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99709 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00040 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99653 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46942 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46979 * 120.00266 * 15 13 11 18 18 H 1.48500 * 109.46999 * 240.00165 * 15 13 11 19 19 N 1.31966 * 120.83150 * 359.45273 * 7 6 5 20 20 H 1.09000 * 109.47134 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47145 * 300.00774 * 1 2 3 22 22 H 1.09001 * 109.46992 * 59.99852 * 1 2 3 23 23 H 1.07998 * 120.45029 * 359.95280 * 4 3 2 24 24 H 1.08002 * 120.76452 * 180.02562 * 5 4 3 25 25 H 1.08001 * 120.35721 * 180.26039 * 6 5 4 26 26 H 1.09002 * 109.46755 * 149.72574 * 8 7 6 27 27 H 1.08998 * 109.46859 * 29.72340 * 8 7 6 28 28 H 1.09001 * 109.47190 * 299.99732 * 10 9 8 29 29 H 1.09004 * 109.47089 * 59.99865 * 10 9 8 30 30 H 0.97006 * 119.99966 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0485 2.5131 -0.0011 6 6 3.2504 3.6492 -0.0068 7 6 1.8770 3.5097 -0.0005 8 6 1.0045 4.7384 -0.0005 9 16 0.6550 5.2318 1.7097 10 6 -0.3880 6.7018 1.5053 11 6 -0.7697 7.2393 2.8605 12 1 -0.4195 6.7463 3.7552 13 6 -1.5652 8.3613 2.9580 14 7 -1.9913 8.9620 1.8685 15 14 -2.0389 9.0272 4.6378 16 1 -1.4361 8.1766 5.6953 17 1 -1.5391 10.4186 4.7776 18 1 -3.5174 9.0160 4.7757 19 7 1.3186 2.3141 0.0000 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 4.0229 0.3696 -0.0002 24 1 5.1254 2.5947 -0.0019 25 1 3.6992 4.6315 -0.0116 26 1 0.0683 4.5192 -0.5140 27 1 1.5196 5.5498 -0.5147 28 1 0.1623 7.4639 0.9536 29 1 -1.2894 6.4339 0.9540 30 1 -2.5506 9.7516 1.9371 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413012010.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:58 Heat of formation + Delta-G solvation = -33.536596 kcal Electronic energy + Delta-G solvation = -13934.992029 eV Core-core repulsion = 11434.829108 eV Total energy + Delta-G solvation = -2500.162921 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.61862 -38.98071 -35.30586 -34.03290 -32.75087 -30.70494 -29.36134 -27.61964 -25.24947 -23.94324 -23.26859 -19.23324 -18.67042 -17.85949 -17.21967 -16.97353 -16.91476 -16.38475 -15.48079 -15.37817 -14.85536 -14.67579 -14.45206 -14.03529 -13.95942 -13.63753 -13.08271 -12.75678 -12.69448 -12.55864 -12.34282 -11.91026 -11.58923 -10.91917 -10.76121 -10.74985 -10.59454 -9.43510 -8.50966 -8.34401 -6.47755 -0.10364 0.33361 1.11387 1.39851 1.40331 1.55149 1.96179 2.13890 2.36331 2.83545 3.00257 3.04657 3.69974 4.07413 4.14188 4.23711 4.32912 4.39903 4.46364 4.49651 4.71131 4.76125 4.93082 4.93411 5.04621 5.22341 5.48798 5.55932 5.86986 6.20558 6.59420 6.85596 7.20374 8.77785 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.039966 B = 0.004754 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.422867 B = 5888.859085 C = 6189.969958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.317 6.317 3 C 0.297 3.703 4 C -0.188 4.188 5 C -0.030 4.030 6 C -0.192 4.192 7 C 0.167 3.833 8 C -0.034 4.034 9 S -0.296 6.296 10 C 0.092 3.908 11 C -0.537 4.537 12 H 0.060 0.940 13 C 0.016 3.984 14 N -0.924 5.924 15 Si 0.977 3.023 16 H -0.266 1.266 17 H -0.270 1.270 18 H -0.273 1.273 19 N -0.556 5.556 20 H 0.127 0.873 21 H 0.044 0.956 22 H 0.052 0.948 23 H 0.169 0.831 24 H 0.186 0.814 25 H 0.156 0.844 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.022 0.978 29 H 0.013 0.987 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.632 -14.102 -5.486 18.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.224 6.224 3 C 0.117 3.883 4 C -0.210 4.210 5 C -0.055 4.055 6 C -0.215 4.215 7 C 0.031 3.969 8 C -0.182 4.182 9 S -0.068 6.068 10 C -0.055 4.055 11 C -0.575 4.575 12 H 0.078 0.922 13 C -0.185 4.185 14 N -0.563 5.563 15 Si 0.800 3.200 16 H -0.191 1.191 17 H -0.195 1.195 18 H -0.198 1.198 19 N -0.281 5.281 20 H 0.145 0.855 21 H 0.063 0.937 22 H 0.070 0.930 23 H 0.186 0.814 24 H 0.204 0.796 25 H 0.174 0.826 26 H 0.102 0.898 27 H 0.129 0.871 28 H 0.040 0.960 29 H 0.032 0.968 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.029 -14.764 -4.630 18.438 hybrid contribution -0.612 1.339 -0.539 1.567 sum 9.417 -13.425 -5.169 17.194 Atomic orbital electron populations 1.22972 0.76397 1.04486 1.01706 1.86199 1.23827 1.24259 1.88112 1.20221 0.90545 0.84348 0.93195 1.21468 0.91029 1.01234 1.07223 1.21865 1.02368 0.89702 0.91535 1.22086 0.92780 1.02088 1.04509 1.20074 0.92349 0.89776 0.94673 1.22120 1.02110 0.97083 0.96889 1.86670 1.68792 1.39712 1.11615 1.20786 0.94254 0.90363 1.00088 1.20996 1.32601 1.12320 0.91628 0.92154 1.25899 0.94888 0.96104 1.01587 1.70058 1.35391 1.20879 1.29985 0.85216 0.78209 0.78297 0.78238 1.19065 1.19529 1.19805 1.66899 1.42413 0.98974 1.19864 0.85457 0.93696 0.92964 0.81356 0.79631 0.82611 0.89815 0.87130 0.96001 0.96830 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 10.38 113.37 1.18 2.07 16 2 O -0.32 -8.35 10.48 -90.03 -0.94 -9.29 16 3 C 0.30 8.45 7.49 84.79 0.63 9.08 16 4 C -0.19 -4.03 10.04 22.46 0.23 -3.80 16 5 C -0.03 -0.56 10.17 22.45 0.23 -0.33 16 6 C -0.19 -4.76 9.73 22.37 0.22 -4.54 16 7 C 0.17 5.35 6.04 42.49 0.26 5.61 16 8 C -0.03 -1.21 6.22 71.24 0.44 -0.77 16 9 S -0.30 -13.42 21.64 -56.49 -1.22 -14.65 16 10 C 0.09 5.00 5.70 71.24 0.41 5.41 16 11 C -0.54 -31.14 9.13 25.60 0.23 -30.90 16 12 H 0.06 3.51 7.71 -2.91 -0.02 3.49 16 13 C 0.02 0.91 5.46 84.66 0.46 1.37 16 14 N -0.92 -54.51 13.29 21.45 0.28 -54.23 16 15 Si 0.98 43.95 29.54 68.60 2.03 45.98 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 N -0.56 -18.51 9.13 -296.99 -2.71 -21.22 16 20 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 21 H 0.04 1.16 8.10 -2.39 -0.02 1.14 16 22 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 23 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 24 H 0.19 1.82 8.06 -2.91 -0.02 1.80 16 25 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 26 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 27 H 0.11 3.48 8.07 -2.39 -0.02 3.46 16 28 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 Total: -1.00 -68.31 282.79 2.84 -65.47 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 1.12 Total: 4.74 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 4.29 Total: -16.80 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -2.43 Total: -75.45 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.94 Total: -9.29 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -13.42 SS G_CDS: -1.22 Total: -14.65 kcal Total: -68.31 2.84 -65.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413012010.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.931 kcal (2) G-P(sol) polarization free energy of solvation -68.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds