Wall clock time and date at job start Sun Mar 29 2020 22:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35673 * 116.99651 * 2 1 4 4 N 1.32269 * 119.69049 * 0.24369 * 3 2 1 5 5 C 1.31936 * 121.65195 * 180.29172 * 4 3 2 6 6 C 1.38092 * 120.83134 * 359.72484 * 5 4 3 7 7 C 1.38786 * 119.28622 * 0.02562 * 6 5 4 8 8 C 1.38420 * 118.48606 * 359.97438 * 7 6 5 9 9 C 1.50705 * 120.44463 * 179.97438 * 8 7 6 10 10 S 1.81405 * 109.46754 * 90.00047 * 9 8 7 11 11 C 1.81399 * 102.99706 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47410 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99606 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00217 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99892 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00005 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47136 * 90.00207 * 16 14 12 18 18 H 1.48503 * 109.47010 * 210.00273 * 16 14 12 19 19 H 1.48496 * 109.47272 * 329.99946 * 16 14 12 20 20 H 1.08997 * 109.46785 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47134 * 300.00196 * 1 2 3 22 22 H 1.08998 * 109.47227 * 60.00089 * 1 2 3 23 23 H 1.08000 * 119.58696 * 179.74926 * 5 4 3 24 24 H 1.07996 * 120.35641 * 180.02562 * 6 5 4 25 25 H 1.08004 * 120.75447 * 179.97438 * 7 6 5 26 26 H 1.09000 * 109.47022 * 330.00320 * 9 8 7 27 27 H 1.08998 * 109.46894 * 209.99875 * 9 8 7 28 28 H 1.09004 * 109.47089 * 299.99939 * 11 10 9 29 29 H 1.09004 * 109.47568 * 59.99949 * 11 10 9 30 30 H 0.97002 * 119.99998 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3185 2.3142 0.0049 5 6 1.8768 3.5096 -0.0006 6 6 3.2506 3.6491 -0.0061 7 6 4.0483 2.5134 -0.0063 8 6 3.4322 1.2739 -0.0004 9 6 4.2558 0.0118 -0.0010 10 16 4.5939 -0.4902 1.7091 11 6 5.5786 -1.9998 1.5041 12 6 5.9445 -2.5489 2.8590 13 1 5.6177 -2.0403 3.7539 14 6 6.6973 -3.6999 2.9560 15 7 7.0162 -4.1793 4.1384 16 14 7.2631 -4.5792 1.4081 17 1 8.5850 -4.0463 0.9912 18 1 7.3794 -6.0345 1.6799 19 1 6.2747 -4.3559 0.3226 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.2515 4.3902 -0.0005 24 1 3.6995 4.6314 -0.0102 25 1 5.1253 2.5949 -0.0110 26 1 5.1974 0.1926 -0.5195 27 1 3.7067 -0.7801 -0.5103 28 1 4.9968 -2.7416 0.9569 29 1 6.4871 -1.7684 0.9480 30 1 7.5461 -4.9889 4.2067 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413013249.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:00 Heat of formation + Delta-G solvation = -8.415152 kcal Electronic energy + Delta-G solvation = -14178.398386 eV Core-core repulsion = 11679.324813 eV Total energy + Delta-G solvation = -2499.073574 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.62743 -37.79867 -33.66877 -33.01994 -31.24145 -29.34584 -27.59259 -26.95389 -22.98655 -22.78509 -21.89791 -18.31661 -17.09485 -16.90799 -16.06014 -15.76666 -15.17016 -14.43325 -14.19739 -14.15671 -13.61284 -13.20810 -13.10295 -13.00722 -12.33659 -12.30466 -12.05708 -11.53495 -11.18732 -10.81523 -10.67857 -10.17550 -9.78896 -9.62395 -9.53475 -8.96290 -8.70160 -8.27473 -6.75748 -6.16578 -4.18452 1.01678 1.29333 2.64373 3.16110 3.21959 3.29500 3.30991 3.69191 3.85866 4.27383 4.32193 4.80261 4.90115 4.95703 5.14710 5.22028 5.30185 5.34126 5.42037 5.58631 5.65276 5.94873 6.03416 6.22535 6.42988 6.60194 6.72399 7.28132 7.44611 7.82786 8.32100 8.86397 9.39206 10.95594 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.037157 B = 0.005594 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.388052 B = 5004.257023 C = 5303.442919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.295 6.295 3 C 0.333 3.667 4 N -0.542 5.542 5 C 0.131 3.869 6 C -0.211 4.211 7 C -0.031 4.031 8 C -0.125 4.125 9 C -0.050 4.050 10 S -0.258 6.258 11 C 0.045 3.955 12 C -0.513 4.513 13 H 0.083 0.917 14 C 0.079 3.921 15 N -0.892 5.892 16 Si 0.878 3.122 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.266 1.266 20 H 0.095 0.905 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.157 0.843 24 H 0.136 0.864 25 H 0.143 0.857 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.316 12.945 -11.661 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.201 6.201 3 C 0.152 3.848 4 N -0.266 5.266 5 C -0.025 4.025 6 C -0.231 4.231 7 C -0.058 4.058 8 C -0.129 4.129 9 C -0.198 4.198 10 S -0.029 6.029 11 C -0.103 4.103 12 C -0.552 4.552 13 H 0.101 0.899 14 C -0.125 4.125 15 N -0.530 5.530 16 Si 0.705 3.295 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.190 1.190 20 H 0.114 0.886 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.174 0.826 24 H 0.154 0.846 25 H 0.161 0.839 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.332 12.878 -10.613 19.628 hybrid contribution 1.411 -0.949 -1.771 2.455 sum -8.921 11.929 -12.385 19.372 Atomic orbital electron populations 1.22847 0.77542 1.02975 1.02061 1.86338 1.22530 1.24067 1.87189 1.19604 0.88753 0.84804 0.91623 1.67325 1.40753 0.98775 1.19714 1.22346 0.92931 0.93567 0.93670 1.21925 0.94840 0.99595 1.06762 1.21370 1.00903 0.90530 0.92993 1.19388 0.90928 0.95672 1.06941 1.22033 1.01017 0.96723 1.00048 1.86944 1.71701 1.36873 1.07359 1.21429 0.95584 0.91367 1.01873 1.20483 1.34226 1.09914 0.90533 0.89878 1.24855 0.95128 0.96347 0.96160 1.69868 1.37866 1.22352 1.22897 0.86805 0.79637 0.79314 0.83780 1.19902 1.20804 1.19049 0.88616 0.92303 0.92666 0.82585 0.84563 0.83942 0.89858 0.89331 0.94666 0.95209 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.38 101.05 1.05 1.53 16 2 O -0.30 -4.68 9.54 -18.72 -0.18 -4.86 16 3 C 0.33 5.24 7.47 -17.13 -0.13 5.11 16 4 N -0.54 -7.66 9.22 -13.33 -0.12 -7.79 16 5 C 0.13 1.48 11.18 -17.56 -0.20 1.28 16 6 C -0.21 -2.24 10.11 -39.43 -0.40 -2.64 16 7 C -0.03 -0.39 9.85 -39.31 -0.39 -0.78 16 8 C -0.13 -1.94 5.17 -104.31 -0.54 -2.48 16 9 C -0.05 -0.85 5.87 36.01 0.21 -0.64 16 10 S -0.26 -5.65 21.64 -107.50 -2.33 -7.98 16 11 C 0.05 1.12 4.77 36.01 0.17 1.29 16 12 C -0.51 -14.91 9.68 -34.44 -0.33 -15.24 16 13 H 0.08 2.66 7.96 -52.48 -0.42 2.24 16 14 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 15 N -0.89 -27.25 13.96 55.43 0.77 -26.48 16 16 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 20 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 21 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 22 H 0.05 0.59 8.11 -51.93 -0.42 0.17 16 23 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 24 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 25 H 0.14 1.55 8.06 -52.48 -0.42 1.13 16 26 H 0.08 1.27 8.10 -51.92 -0.42 0.85 16 27 H 0.09 1.51 7.54 -51.92 -0.39 1.12 16 28 H 0.04 0.86 7.20 -51.92 -0.37 0.49 16 29 H 0.03 0.70 7.57 -51.92 -0.39 0.31 16 30 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 277.71 15.07 4.19 4.19 Total: -1.00 -32.55 277.71 -6.68 -39.23 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -3.70 Total: -2.45 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -0.65 Total: -10.37 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.65 Total: -34.27 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.18 Total: -4.86 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Atomic # 16 Polarization: -5.65 SS G_CDS: -2.33 Total: -7.98 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.55 -6.68 -39.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013249.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.815 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds