Wall clock time and date at job start Sun Mar 29 2020 22:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35673 * 116.99651 * 2 1 4 4 N 1.32269 * 119.69049 * 0.24369 * 3 2 1 5 5 C 1.31936 * 121.65195 * 180.29172 * 4 3 2 6 6 C 1.38092 * 120.83134 * 359.72484 * 5 4 3 7 7 C 1.38786 * 119.28622 * 0.02562 * 6 5 4 8 8 C 1.38420 * 118.48606 * 359.97438 * 7 6 5 9 9 C 1.50705 * 120.44463 * 179.97438 * 8 7 6 10 10 S 1.81405 * 109.46754 * 90.00047 * 9 8 7 11 11 C 1.81399 * 102.99706 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47410 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99606 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00217 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99892 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00005 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47136 * 90.00207 * 16 14 12 18 18 H 1.48503 * 109.47010 * 210.00273 * 16 14 12 19 19 H 1.48496 * 109.47272 * 329.99946 * 16 14 12 20 20 H 1.08997 * 109.46785 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47134 * 300.00196 * 1 2 3 22 22 H 1.08998 * 109.47227 * 60.00089 * 1 2 3 23 23 H 1.08000 * 119.58696 * 179.74926 * 5 4 3 24 24 H 1.07996 * 120.35641 * 180.02562 * 6 5 4 25 25 H 1.08004 * 120.75447 * 179.97438 * 7 6 5 26 26 H 1.09000 * 109.47022 * 330.00320 * 9 8 7 27 27 H 1.08998 * 109.46894 * 209.99875 * 9 8 7 28 28 H 1.09004 * 109.47089 * 299.99939 * 11 10 9 29 29 H 1.09004 * 109.47568 * 59.99949 * 11 10 9 30 30 H 0.97002 * 119.99998 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3185 2.3142 0.0049 5 6 1.8768 3.5096 -0.0006 6 6 3.2506 3.6491 -0.0061 7 6 4.0483 2.5134 -0.0063 8 6 3.4322 1.2739 -0.0004 9 6 4.2558 0.0118 -0.0010 10 16 4.5939 -0.4902 1.7091 11 6 5.5786 -1.9998 1.5041 12 6 5.9445 -2.5489 2.8590 13 1 5.6177 -2.0403 3.7539 14 6 6.6973 -3.6999 2.9560 15 7 7.0162 -4.1793 4.1384 16 14 7.2631 -4.5792 1.4081 17 1 8.5850 -4.0463 0.9912 18 1 7.3794 -6.0345 1.6799 19 1 6.2747 -4.3559 0.3226 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.2515 4.3902 -0.0005 24 1 3.6995 4.6314 -0.0102 25 1 5.1253 2.5949 -0.0110 26 1 5.1974 0.1926 -0.5195 27 1 3.7067 -0.7801 -0.5103 28 1 4.9968 -2.7416 0.9569 29 1 6.4871 -1.7684 0.9480 30 1 7.5461 -4.9889 4.2067 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413013249.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:00 Heat of formation + Delta-G solvation = -31.013615 kcal Electronic energy + Delta-G solvation = -14179.378329 eV Core-core repulsion = 11679.324813 eV Total energy + Delta-G solvation = -2500.053516 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.63180 -38.81995 -35.21443 -34.74742 -32.20913 -31.45861 -28.68491 -27.97580 -24.74154 -23.94383 -23.14659 -19.33333 -19.09068 -18.09797 -17.39233 -17.01644 -16.33601 -16.13823 -15.47061 -15.24953 -15.16752 -14.82991 -14.45705 -14.09995 -14.04409 -13.79733 -13.11477 -12.69303 -12.56900 -12.37320 -12.14695 -12.07527 -11.79488 -10.93986 -10.87705 -10.63582 -10.54760 -9.33864 -8.50343 -8.38041 -6.47989 -0.05609 0.32825 1.14892 1.33345 1.36200 1.46703 1.98205 2.18241 2.29014 2.85976 2.94731 3.31971 3.78890 3.81021 4.08784 4.21256 4.42892 4.42919 4.46821 4.57257 4.61043 4.74880 4.75050 4.77125 5.09231 5.26516 5.32640 5.54007 6.06446 6.27492 6.55531 6.85308 7.14422 8.78016 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.037157 B = 0.005594 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.388052 B = 5004.257023 C = 5303.442919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.322 6.322 3 C 0.313 3.687 4 N -0.557 5.557 5 C 0.132 3.868 6 C -0.200 4.200 7 C -0.032 4.032 8 C -0.157 4.157 9 C -0.026 4.026 10 S -0.301 6.301 11 C 0.050 3.950 12 C -0.530 4.530 13 H 0.033 0.967 14 C 0.019 3.981 15 N -0.940 5.940 16 Si 0.955 3.045 17 H -0.258 1.258 18 H -0.276 1.276 19 H -0.248 1.248 20 H 0.113 0.887 21 H 0.054 0.946 22 H 0.064 0.936 23 H 0.195 0.805 24 H 0.176 0.824 25 H 0.160 0.840 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.044 0.956 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.312 14.470 -14.179 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.229 6.229 3 C 0.133 3.867 4 N -0.281 5.281 5 C -0.024 4.024 6 C -0.220 4.220 7 C -0.059 4.059 8 C -0.161 4.161 9 C -0.174 4.174 10 S -0.072 6.072 11 C -0.097 4.097 12 C -0.569 4.569 13 H 0.051 0.949 14 C -0.180 4.180 15 N -0.579 5.579 16 Si 0.777 3.223 17 H -0.183 1.183 18 H -0.201 1.201 19 H -0.171 1.171 20 H 0.131 0.869 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.212 0.788 24 H 0.193 0.807 25 H 0.178 0.822 26 H 0.122 0.878 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.335 14.411 -13.126 22.063 hybrid contribution 1.292 -1.213 -0.942 2.007 sum -9.043 13.197 -14.068 21.304 Atomic orbital electron populations 1.23017 0.76018 1.04278 1.02272 1.86287 1.24278 1.24890 1.87428 1.19808 0.89118 0.85238 0.92510 1.67391 1.41082 0.99330 1.20300 1.23126 0.94082 0.93701 0.91516 1.22359 0.94458 1.00614 1.04520 1.21722 1.02127 0.90194 0.91849 1.19420 0.90908 0.95868 1.09921 1.21972 1.02292 0.97544 0.95560 1.86998 1.71315 1.35613 1.13237 1.21197 0.96599 0.92707 0.99242 1.20673 1.34696 1.10398 0.91122 0.94851 1.25911 0.94867 0.97052 1.00212 1.70024 1.38881 1.23207 1.25838 0.85597 0.79903 0.77803 0.79029 1.18264 1.20150 1.17118 0.86855 0.92752 0.91693 0.78832 0.80667 0.82244 0.87799 0.89727 0.94359 0.93774 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.90 10.38 113.37 1.18 2.08 16 2 O -0.32 -10.19 9.54 -89.91 -0.86 -11.05 16 3 C 0.31 9.59 7.47 84.78 0.63 10.22 16 4 N -0.56 -14.75 9.22 -308.94 -2.85 -17.59 16 5 C 0.13 2.52 11.18 84.64 0.95 3.47 16 6 C -0.20 -3.47 10.11 22.37 0.23 -3.24 16 7 C -0.03 -0.72 9.85 22.44 0.22 -0.50 16 8 C -0.16 -4.65 5.17 -19.67 -0.10 -4.75 16 9 C -0.03 -0.85 5.87 71.24 0.42 -0.44 16 10 S -0.30 -13.33 21.64 -56.49 -1.22 -14.56 16 11 C 0.05 2.49 4.77 71.24 0.34 2.83 16 12 C -0.53 -31.85 9.68 25.60 0.25 -31.60 16 13 H 0.03 2.27 7.96 -2.91 -0.02 2.24 16 14 C 0.02 1.14 5.47 84.65 0.46 1.60 16 15 N -0.94 -59.06 13.96 21.45 0.30 -58.76 16 16 Si 0.96 43.33 27.47 68.60 1.88 45.22 16 17 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.25 -10.43 6.54 99.48 0.65 -9.78 16 20 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 21 H 0.05 1.27 8.10 -2.38 -0.02 1.25 16 22 H 0.06 1.33 8.11 -2.39 -0.02 1.31 16 23 H 0.19 2.10 8.06 -2.91 -0.02 2.08 16 24 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 25 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 26 H 0.10 2.94 8.10 -2.39 -0.02 2.93 16 27 H 0.08 2.83 7.54 -2.39 -0.02 2.82 16 28 H 0.04 1.84 7.20 -2.39 -0.02 1.83 16 29 H 0.04 2.03 7.57 -2.39 -0.02 2.01 16 30 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -73.42 277.71 2.90 -70.53 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 1.07 Total: 6.54 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 4.57 Total: -20.33 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -2.55 Total: -76.36 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.86 Total: -11.05 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.88 Total: 45.22 kcal Atomic # 16 Polarization: -13.33 SS G_CDS: -1.22 Total: -14.56 kcal Total: -73.42 2.90 -70.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013249.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.513 kcal (2) G-P(sol) polarization free energy of solvation -73.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds