Wall clock time and date at job start Sun Mar 29 2020 22:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35732 * 117.00435 * 2 1 4 4 C 1.39284 * 120.84857 * 0.02627 * 3 2 1 5 5 C 1.37948 * 119.09617 * 179.97438 * 4 3 2 6 6 N 1.31971 * 120.82495 * 0.02562 * 5 4 3 7 7 C 1.31949 * 121.86325 * 359.66205 * 6 5 4 8 8 C 1.37994 * 120.81819 * 0.62562 * 7 6 5 9 9 C 1.50705 * 120.45251 * 179.68437 * 8 7 6 10 10 S 1.81405 * 109.46754 * 269.72557 * 9 8 7 11 11 C 1.81399 * 102.99706 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47410 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99606 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00217 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99909 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99980 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47104 * 89.99581 * 16 14 12 18 18 H 1.48500 * 109.46876 * 209.99805 * 16 14 12 19 19 H 1.48506 * 109.46930 * 329.99720 * 16 14 12 20 20 H 1.08994 * 109.47299 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46910 * 300.00221 * 1 2 3 22 22 H 1.09006 * 109.46689 * 59.99359 * 1 2 3 23 23 H 1.08002 * 120.45340 * 359.95157 * 4 3 2 24 24 H 1.08005 * 119.58557 * 179.97438 * 5 4 3 25 25 H 1.07997 * 119.59178 * 180.31683 * 7 6 5 26 26 H 1.09000 * 109.47022 * 149.72830 * 9 8 7 27 27 H 1.08998 * 109.46894 * 29.72386 * 9 8 7 28 28 H 1.09004 * 109.47089 * 299.99939 * 11 10 9 29 29 H 1.09004 * 109.47568 * 59.99949 * 11 10 9 30 30 H 0.97002 * 119.99804 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 1.3042 2.3886 0.0005 5 6 1.9678 3.5980 0.0011 6 7 3.2867 3.6456 0.0005 7 6 4.0232 2.5508 0.0061 8 6 3.4346 1.3027 -0.0002 9 6 4.2839 0.0578 -0.0009 10 16 4.6244 -0.4408 -1.7115 11 6 5.6395 -1.9304 -1.5079 12 6 6.0114 -2.4740 -2.8634 13 1 5.6707 -1.9737 -3.7579 14 6 6.7855 -3.6107 -2.9616 15 7 7.1999 -4.2202 -1.8724 16 14 7.2470 -4.2841 -4.6418 17 1 8.5265 -3.6744 -5.0850 18 1 7.4039 -5.7584 -4.5580 19 1 6.1774 -3.9547 -5.6179 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5140 -0.8900 23 1 0.2246 2.3567 0.0002 24 1 1.4010 4.5173 0.0011 25 1 5.1001 2.6326 0.0107 26 1 3.7534 -0.7442 0.5125 27 1 5.2239 0.2589 0.5129 28 1 6.5456 -1.6799 -0.9562 29 1 5.0748 -2.6825 -0.9569 30 1 7.7443 -5.0201 -1.9415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413014761.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:06 Heat of formation + Delta-G solvation = -14.326150 kcal Electronic energy + Delta-G solvation = -14121.911383 eV Core-core repulsion = 11622.581490 eV Total energy + Delta-G solvation = -2499.329894 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.62629 -38.17173 -33.24065 -33.10960 -31.20849 -28.53006 -27.80345 -27.02717 -23.15703 -22.88549 -21.99472 -18.35835 -17.09640 -16.52484 -15.97562 -15.46582 -14.96696 -14.93458 -14.51730 -14.23299 -13.69856 -13.31335 -13.01515 -12.55347 -12.38953 -12.19477 -11.82912 -11.63406 -11.23439 -10.86208 -10.71581 -10.17984 -9.63959 -9.46029 -9.10360 -8.86060 -8.59039 -8.46822 -6.62587 -6.16942 -4.20840 1.03396 1.35440 2.78503 3.11164 3.27900 3.33322 3.39035 3.88652 3.93903 4.37773 4.44460 4.63274 4.77002 4.95408 5.01680 5.07140 5.20160 5.32492 5.36136 5.44651 5.70867 5.87792 6.05734 6.14904 6.58897 7.13414 7.15190 7.18671 7.77637 8.03200 8.04494 8.80914 9.41908 10.94384 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.038174 B = 0.005234 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.308116 B = 5348.394790 C = 5682.109317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.297 6.297 3 C 0.179 3.821 4 C -0.265 4.265 5 C 0.127 3.873 6 N -0.508 5.508 7 C 0.145 3.855 8 C -0.138 4.138 9 C -0.041 4.041 10 S -0.296 6.296 11 C 0.089 3.911 12 C -0.510 4.510 13 H 0.067 0.933 14 C 0.065 3.935 15 N -0.894 5.894 16 Si 0.906 3.094 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.271 1.271 20 H 0.103 0.897 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.137 0.863 24 H 0.155 0.845 25 H 0.164 0.836 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.314 10.664 6.008 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.207 6.207 3 C 0.124 3.876 4 C -0.286 4.286 5 C -0.031 4.031 6 N -0.220 5.220 7 C -0.012 4.012 8 C -0.142 4.142 9 C -0.189 4.189 10 S -0.068 6.068 11 C -0.057 4.057 12 C -0.550 4.550 13 H 0.085 0.915 14 C -0.139 4.139 15 N -0.532 5.532 16 Si 0.733 3.267 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.196 1.196 20 H 0.122 0.878 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.155 0.845 24 H 0.172 0.828 25 H 0.181 0.819 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.050 11.528 5.134 17.449 hybrid contribution -0.062 -1.806 0.290 1.830 sum -12.112 9.722 5.425 16.451 Atomic orbital electron populations 1.23130 0.78160 1.04406 1.01236 1.86180 1.21439 1.25883 1.87174 1.19153 0.91830 0.84778 0.91851 1.22149 1.01299 0.93153 1.11984 1.22489 0.90420 0.96771 0.93385 1.67738 1.07014 1.31940 1.15331 1.22584 1.00449 0.85920 0.92287 1.19889 0.90851 0.96615 1.06811 1.21907 1.00740 0.96576 0.99679 1.86801 1.71233 1.40514 1.08214 1.21060 0.94721 0.88781 1.01173 1.20682 1.32730 1.10452 0.91122 0.91534 1.24960 0.95383 0.96116 0.97405 1.69958 1.35811 1.19664 1.27752 0.86357 0.79031 0.77932 0.83370 1.20332 1.20996 1.19580 0.87832 0.92679 0.92392 0.84526 0.82778 0.81906 0.89546 0.89721 0.94596 0.94623 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.84 101.05 0.99 1.24 16 2 O -0.30 -4.33 9.67 -18.90 -0.18 -4.51 16 3 C 0.18 2.64 6.70 -38.82 -0.26 2.38 16 4 C -0.26 -3.15 9.11 -39.30 -0.36 -3.50 16 5 C 0.13 1.52 11.17 -17.60 -0.20 1.33 16 6 N -0.51 -7.34 10.36 -13.33 -0.14 -7.48 16 7 C 0.14 2.16 10.85 -17.59 -0.19 1.97 16 8 C -0.14 -2.21 5.17 -104.33 -0.54 -2.75 16 9 C -0.04 -0.73 5.90 36.01 0.21 -0.52 16 10 S -0.30 -6.68 21.64 -107.50 -2.33 -9.01 16 11 C 0.09 2.37 5.70 36.01 0.21 2.58 16 12 C -0.51 -14.65 9.13 -34.44 -0.31 -14.96 16 13 H 0.07 1.92 7.71 -52.48 -0.40 1.51 16 14 C 0.06 1.84 5.46 -17.82 -0.10 1.75 16 15 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 16 Si 0.91 21.61 29.54 -169.99 -5.02 16.58 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.05 0.41 7.71 -51.93 -0.40 0.01 16 22 H 0.06 0.48 7.71 -51.93 -0.40 0.08 16 23 H 0.14 1.19 6.47 -52.49 -0.34 0.85 16 24 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 25 H 0.16 2.17 8.06 -52.49 -0.42 1.74 16 26 H 0.09 1.56 7.62 -51.92 -0.40 1.17 16 27 H 0.08 1.40 8.09 -51.92 -0.42 0.98 16 28 H 0.04 0.98 8.14 -51.92 -0.42 0.56 16 29 H 0.04 0.98 8.14 -51.92 -0.42 0.56 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 279.01 15.07 4.20 4.20 Total: -1.00 -31.96 279.01 -6.88 -38.85 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -3.61 Total: -2.64 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -0.55 Total: -10.50 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.60 Total: -32.98 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.18 Total: -4.51 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -6.68 SS G_CDS: -2.33 Total: -9.01 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.96 -6.88 -38.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014761.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.520 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds