Wall clock time and date at job start Sun Mar 29 2020 22:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35732 * 117.00435 * 2 1 4 4 C 1.39284 * 120.84857 * 0.02627 * 3 2 1 5 5 C 1.37948 * 119.09617 * 179.97438 * 4 3 2 6 6 N 1.31971 * 120.82495 * 0.02562 * 5 4 3 7 7 C 1.31949 * 121.86325 * 359.66205 * 6 5 4 8 8 C 1.37994 * 120.81819 * 0.62562 * 7 6 5 9 9 C 1.50705 * 120.45251 * 179.68437 * 8 7 6 10 10 S 1.81405 * 109.46754 * 269.72557 * 9 8 7 11 11 C 1.81399 * 102.99706 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47410 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99606 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00217 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99909 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99980 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47104 * 89.99581 * 16 14 12 18 18 H 1.48500 * 109.46876 * 209.99805 * 16 14 12 19 19 H 1.48506 * 109.46930 * 329.99720 * 16 14 12 20 20 H 1.08994 * 109.47299 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46910 * 300.00221 * 1 2 3 22 22 H 1.09006 * 109.46689 * 59.99359 * 1 2 3 23 23 H 1.08002 * 120.45340 * 359.95157 * 4 3 2 24 24 H 1.08005 * 119.58557 * 179.97438 * 5 4 3 25 25 H 1.07997 * 119.59178 * 180.31683 * 7 6 5 26 26 H 1.09000 * 109.47022 * 149.72830 * 9 8 7 27 27 H 1.08998 * 109.46894 * 29.72386 * 9 8 7 28 28 H 1.09004 * 109.47089 * 299.99939 * 11 10 9 29 29 H 1.09004 * 109.47568 * 59.99949 * 11 10 9 30 30 H 0.97002 * 119.99804 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 1.3042 2.3886 0.0005 5 6 1.9678 3.5980 0.0011 6 7 3.2867 3.6456 0.0005 7 6 4.0232 2.5508 0.0061 8 6 3.4346 1.3027 -0.0002 9 6 4.2839 0.0578 -0.0009 10 16 4.6244 -0.4408 -1.7115 11 6 5.6395 -1.9304 -1.5079 12 6 6.0114 -2.4740 -2.8634 13 1 5.6707 -1.9737 -3.7579 14 6 6.7855 -3.6107 -2.9616 15 7 7.1999 -4.2202 -1.8724 16 14 7.2470 -4.2841 -4.6418 17 1 8.5265 -3.6744 -5.0850 18 1 7.4039 -5.7584 -4.5580 19 1 6.1774 -3.9547 -5.6179 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5140 -0.8900 23 1 0.2246 2.3567 0.0002 24 1 1.4010 4.5173 0.0011 25 1 5.1001 2.6326 0.0107 26 1 3.7534 -0.7442 0.5125 27 1 5.2239 0.2589 0.5129 28 1 6.5456 -1.6799 -0.9562 29 1 5.0748 -2.6825 -0.9569 30 1 7.7443 -5.0201 -1.9415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413014761.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:06 Heat of formation + Delta-G solvation = -34.596860 kcal Electronic energy + Delta-G solvation = -14122.790387 eV Core-core repulsion = 11622.581490 eV Total energy + Delta-G solvation = -2500.208898 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.65728 -39.17930 -35.29907 -34.40679 -32.21107 -30.69070 -28.73353 -28.17707 -25.23082 -23.89596 -23.19474 -19.34189 -18.65595 -18.14874 -17.27445 -16.91080 -16.34636 -16.13061 -15.91258 -15.18063 -14.97873 -14.73916 -14.57784 -14.33488 -14.11965 -13.72596 -13.07830 -12.73692 -12.64477 -12.47641 -12.20100 -12.09656 -11.60361 -10.80994 -10.75235 -10.53394 -10.09207 -9.68943 -8.46995 -8.33541 -6.47182 -0.07943 0.28984 1.19843 1.39921 1.41240 1.53895 2.01978 2.20046 2.36631 2.85551 3.00667 3.43665 3.64457 3.73882 3.93811 4.12922 4.33248 4.34386 4.37025 4.59292 4.69847 4.75595 4.88160 4.94005 4.94221 5.04765 5.56071 5.57682 5.88180 6.23994 6.59824 6.99866 7.20755 8.78463 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.038174 B = 0.005234 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.308116 B = 5348.394790 C = 5682.109317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.327 6.327 3 C 0.170 3.830 4 C -0.256 4.256 5 C 0.132 3.868 6 N -0.527 5.527 7 C 0.143 3.857 8 C -0.168 4.168 9 C -0.021 4.021 10 S -0.308 6.308 11 C 0.093 3.907 12 C -0.537 4.537 13 H 0.060 0.940 14 C 0.015 3.985 15 N -0.925 5.925 16 Si 0.978 3.022 17 H -0.268 1.268 18 H -0.274 1.274 19 H -0.266 1.266 20 H 0.113 0.887 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.173 0.827 24 H 0.195 0.805 25 H 0.169 0.831 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.017 0.983 29 H 0.012 0.988 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.862 11.858 5.572 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.114 3.886 4 C -0.276 4.276 5 C -0.025 4.025 6 N -0.239 5.239 7 C -0.015 4.015 8 C -0.172 4.172 9 C -0.169 4.169 10 S -0.079 6.079 11 C -0.054 4.054 12 C -0.576 4.576 13 H 0.078 0.922 14 C -0.186 4.186 15 N -0.564 5.564 16 Si 0.801 3.199 17 H -0.193 1.193 18 H -0.199 1.199 19 H -0.191 1.191 20 H 0.132 0.868 21 H 0.097 0.903 22 H 0.089 0.911 23 H 0.191 0.809 24 H 0.211 0.789 25 H 0.186 0.814 26 H 0.098 0.902 27 H 0.112 0.888 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.610 12.725 4.702 19.216 hybrid contribution 0.264 -2.070 0.530 2.153 sum -13.346 10.655 5.231 17.861 Atomic orbital electron populations 1.23466 0.75623 1.05823 1.02968 1.86143 1.24216 1.26332 1.87084 1.19397 0.91675 0.85915 0.91582 1.22505 1.03001 0.91810 1.10327 1.23209 0.89810 0.98457 0.90991 1.67812 1.08389 1.31493 1.16224 1.22697 1.01038 0.85811 0.91922 1.19806 0.91628 0.95783 1.10025 1.21835 1.01717 0.97586 0.95794 1.86604 1.70135 1.38054 1.13140 1.20738 0.94373 0.90366 0.99954 1.20982 1.33605 1.11333 0.91634 0.92173 1.25921 0.94864 0.96138 1.01651 1.70062 1.36142 1.20111 1.30084 0.85260 0.78940 0.77550 0.78186 1.19285 1.19883 1.19076 0.86825 0.90283 0.91144 0.80925 0.78857 0.81377 0.90169 0.88771 0.96511 0.96968 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.84 113.37 1.12 1.36 16 2 O -0.33 -9.19 9.67 -90.56 -0.88 -10.07 16 3 C 0.17 4.76 6.70 22.76 0.15 4.91 16 4 C -0.26 -5.24 9.11 22.45 0.20 -5.03 16 5 C 0.13 2.72 11.17 84.60 0.95 3.67 16 6 N -0.53 -14.15 10.36 -196.09 -2.03 -16.18 16 7 C 0.14 4.14 10.85 84.62 0.92 5.06 16 8 C -0.17 -5.31 5.17 -19.68 -0.10 -5.41 16 9 C -0.02 -0.78 5.90 71.24 0.42 -0.36 16 10 S -0.31 -14.28 21.64 -56.49 -1.22 -15.50 16 11 C 0.09 5.15 5.70 71.24 0.41 5.56 16 12 C -0.54 -31.63 9.13 25.60 0.23 -31.40 16 13 H 0.06 3.54 7.71 -2.91 -0.02 3.52 16 14 C 0.02 0.86 5.46 84.65 0.46 1.32 16 15 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16 16 Si 0.98 44.40 29.54 68.60 2.03 46.43 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.08 0.90 7.71 -2.39 -0.02 0.89 16 22 H 0.07 0.97 7.71 -2.38 -0.02 0.95 16 23 H 0.17 2.19 6.47 -2.91 -0.02 2.17 16 24 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16 25 H 0.17 4.45 8.06 -2.91 -0.02 4.43 16 26 H 0.08 3.00 7.62 -2.39 -0.02 2.98 16 27 H 0.09 3.19 8.09 -2.39 -0.02 3.17 16 28 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -70.13 279.01 4.07 -66.07 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: 1.13 Total: 4.60 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 4.76 Total: -20.33 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -1.75 Total: -71.20 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.88 Total: -10.07 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -14.28 SS G_CDS: -1.22 Total: -15.50 kcal Total: -70.13 4.07 -66.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014761.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.470 kcal (2) G-P(sol) polarization free energy of solvation -70.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds