Wall clock time and date at job start Sun Mar 29 2020 22:19:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.35732 * 117.00435 * 2 1
4 4 C 1.39284 * 120.84857 * 0.02627 * 3 2 1
5 5 C 1.37948 * 119.09617 * 179.97438 * 4 3 2
6 6 N 1.31971 * 120.82495 * 0.02562 * 5 4 3
7 7 C 1.31949 * 121.86325 * 359.66205 * 6 5 4
8 8 C 1.37994 * 120.81819 * 0.62562 * 7 6 5
9 9 C 1.50705 * 120.45251 * 179.68437 * 8 7 6
10 10 S 1.81405 * 109.46754 * 269.72557 * 9 8 7
11 11 C 1.81399 * 102.99706 * 180.02562 * 10 9 8
12 12 C 1.50702 * 109.47410 * 180.02562 * 11 10 9
13 13 H 1.08003 * 119.99606 * 359.97438 * 12 11 10
14 14 C 1.37873 * 120.00217 * 180.02562 * 12 11 10
15 15 N 1.31516 * 119.99909 * 359.97438 * 14 12 11
16 16 Si 1.86803 * 119.99980 * 180.02562 * 14 12 11
17 17 H 1.48499 * 109.47104 * 89.99581 * 16 14 12
18 18 H 1.48500 * 109.46876 * 209.99805 * 16 14 12
19 19 H 1.48506 * 109.46930 * 329.99720 * 16 14 12
20 20 H 1.08994 * 109.47299 * 179.97438 * 1 2 3
21 21 H 1.09003 * 109.46910 * 300.00221 * 1 2 3
22 22 H 1.09006 * 109.46689 * 59.99359 * 1 2 3
23 23 H 1.08002 * 120.45340 * 359.95157 * 4 3 2
24 24 H 1.08005 * 119.58557 * 179.97438 * 5 4 3
25 25 H 1.07997 * 119.59178 * 180.31683 * 7 6 5
26 26 H 1.09000 * 109.47022 * 149.72830 * 9 8 7
27 27 H 1.08998 * 109.46894 * 29.72386 * 9 8 7
28 28 H 1.09004 * 109.47089 * 299.99939 * 11 10 9
29 29 H 1.09004 * 109.47568 * 59.99949 * 11 10 9
30 30 H 0.97002 * 119.99804 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0453 1.2093 0.0000
4 6 1.3042 2.3886 0.0005
5 6 1.9678 3.5980 0.0011
6 7 3.2867 3.6456 0.0005
7 6 4.0232 2.5508 0.0061
8 6 3.4346 1.3027 -0.0002
9 6 4.2839 0.0578 -0.0009
10 16 4.6244 -0.4408 -1.7115
11 6 5.6395 -1.9304 -1.5079
12 6 6.0114 -2.4740 -2.8634
13 1 5.6707 -1.9737 -3.7579
14 6 6.7855 -3.6107 -2.9616
15 7 7.1999 -4.2202 -1.8724
16 14 7.2470 -4.2841 -4.6418
17 1 8.5265 -3.6744 -5.0850
18 1 7.4039 -5.7584 -4.5580
19 1 6.1774 -3.9547 -5.6179
20 1 -0.3633 -1.0276 -0.0005
21 1 -0.3633 0.5139 0.8900
22 1 -0.3633 0.5140 -0.8900
23 1 0.2246 2.3567 0.0002
24 1 1.4010 4.5173 0.0011
25 1 5.1001 2.6326 0.0107
26 1 3.7534 -0.7442 0.5125
27 1 5.2239 0.2589 0.5129
28 1 6.5456 -1.6799 -0.9562
29 1 5.0748 -2.6825 -0.9569
30 1 7.7443 -5.0201 -1.9415
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000413014761.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:19:06
Heat of formation + Delta-G solvation = -34.596860 kcal
Electronic energy + Delta-G solvation = -14122.790387 eV
Core-core repulsion = 11622.581490 eV
Total energy + Delta-G solvation = -2500.208898 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 239.072 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-41.65728 -39.17930 -35.29907 -34.40679 -32.21107 -30.69070 -28.73353 -28.17707
-25.23082 -23.89596 -23.19474 -19.34189 -18.65595 -18.14874 -17.27445 -16.91080
-16.34636 -16.13061 -15.91258 -15.18063 -14.97873 -14.73916 -14.57784 -14.33488
-14.11965 -13.72596 -13.07830 -12.73692 -12.64477 -12.47641 -12.20100 -12.09656
-11.60361 -10.80994 -10.75235 -10.53394 -10.09207 -9.68943 -8.46995 -8.33541
-6.47182 -0.07943 0.28984 1.19843 1.39921 1.41240 1.53895 2.01978
2.20046 2.36631 2.85551 3.00667 3.43665 3.64457 3.73882 3.93811
4.12922 4.33248 4.34386 4.37025 4.59292 4.69847 4.75595 4.88160
4.94005 4.94221 5.04765 5.56071 5.57682 5.88180 6.23994 6.59824
6.99866 7.20755 8.78463
Molecular weight = 239.07amu
Principal moments of inertia in cm(-1)
A = 0.038174 B = 0.005234 C = 0.004927
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 733.308116 B = 5348.394790 C = 5682.109317
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.015 3.985
2 O -0.327 6.327
3 C 0.170 3.830
4 C -0.256 4.256
5 C 0.132 3.868
6 N -0.527 5.527
7 C 0.143 3.857
8 C -0.168 4.168
9 C -0.021 4.021
10 S -0.308 6.308
11 C 0.093 3.907
12 C -0.537 4.537
13 H 0.060 0.940
14 C 0.015 3.985
15 N -0.925 5.925
16 Si 0.978 3.022
17 H -0.268 1.268
18 H -0.274 1.274
19 H -0.266 1.266
20 H 0.113 0.887
21 H 0.079 0.921
22 H 0.070 0.930
23 H 0.173 0.827
24 H 0.195 0.805
25 H 0.169 0.831
26 H 0.080 0.920
27 H 0.094 0.906
28 H 0.017 0.983
29 H 0.012 0.988
30 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.862 11.858 5.572 19.074
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 O -0.238 6.238
3 C 0.114 3.886
4 C -0.276 4.276
5 C -0.025 4.025
6 N -0.239 5.239
7 C -0.015 4.015
8 C -0.172 4.172
9 C -0.169 4.169
10 S -0.079 6.079
11 C -0.054 4.054
12 C -0.576 4.576
13 H 0.078 0.922
14 C -0.186 4.186
15 N -0.564 5.564
16 Si 0.801 3.199
17 H -0.193 1.193
18 H -0.199 1.199
19 H -0.191 1.191
20 H 0.132 0.868
21 H 0.097 0.903
22 H 0.089 0.911
23 H 0.191 0.809
24 H 0.211 0.789
25 H 0.186 0.814
26 H 0.098 0.902
27 H 0.112 0.888
28 H 0.035 0.965
29 H 0.030 0.970
30 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -13.610 12.725 4.702 19.216
hybrid contribution 0.264 -2.070 0.530 2.153
sum -13.346 10.655 5.231 17.861
Atomic orbital electron populations
1.23466 0.75623 1.05823 1.02968 1.86143 1.24216 1.26332 1.87084
1.19397 0.91675 0.85915 0.91582 1.22505 1.03001 0.91810 1.10327
1.23209 0.89810 0.98457 0.90991 1.67812 1.08389 1.31493 1.16224
1.22697 1.01038 0.85811 0.91922 1.19806 0.91628 0.95783 1.10025
1.21835 1.01717 0.97586 0.95794 1.86604 1.70135 1.38054 1.13140
1.20738 0.94373 0.90366 0.99954 1.20982 1.33605 1.11333 0.91634
0.92173 1.25921 0.94864 0.96138 1.01651 1.70062 1.36142 1.20111
1.30084 0.85260 0.78940 0.77550 0.78186 1.19285 1.19883 1.19076
0.86825 0.90283 0.91144 0.80925 0.78857 0.81377 0.90169 0.88771
0.96511 0.96968 0.92032
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.24 9.84 113.37 1.12 1.36 16
2 O -0.33 -9.19 9.67 -90.56 -0.88 -10.07 16
3 C 0.17 4.76 6.70 22.76 0.15 4.91 16
4 C -0.26 -5.24 9.11 22.45 0.20 -5.03 16
5 C 0.13 2.72 11.17 84.60 0.95 3.67 16
6 N -0.53 -14.15 10.36 -196.09 -2.03 -16.18 16
7 C 0.14 4.14 10.85 84.62 0.92 5.06 16
8 C -0.17 -5.31 5.17 -19.68 -0.10 -5.41 16
9 C -0.02 -0.78 5.90 71.24 0.42 -0.36 16
10 S -0.31 -14.28 21.64 -56.49 -1.22 -15.50 16
11 C 0.09 5.15 5.70 71.24 0.41 5.56 16
12 C -0.54 -31.63 9.13 25.60 0.23 -31.40 16
13 H 0.06 3.54 7.71 -2.91 -0.02 3.52 16
14 C 0.02 0.86 5.46 84.65 0.46 1.32 16
15 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16
16 Si 0.98 44.40 29.54 68.60 2.03 46.43 16
17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16
18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16
19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16
20 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16
21 H 0.08 0.90 7.71 -2.39 -0.02 0.89 16
22 H 0.07 0.97 7.71 -2.38 -0.02 0.95 16
23 H 0.17 2.19 6.47 -2.91 -0.02 2.17 16
24 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16
25 H 0.17 4.45 8.06 -2.91 -0.02 4.43 16
26 H 0.08 3.00 7.62 -2.39 -0.02 2.98 16
27 H 0.09 3.19 8.09 -2.39 -0.02 3.17 16
28 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16
29 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16
30 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16
Total: -1.00 -70.13 279.01 4.07 -66.07
By element:
Atomic # 1 Polarization: 3.47 SS G_CDS: 1.13 Total: 4.60 kcal
Atomic # 6 Polarization: -25.09 SS G_CDS: 4.76 Total: -20.33 kcal
Atomic # 7 Polarization: -69.45 SS G_CDS: -1.75 Total: -71.20 kcal
Atomic # 8 Polarization: -9.19 SS G_CDS: -0.88 Total: -10.07 kcal
Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal
Atomic # 16 Polarization: -14.28 SS G_CDS: -1.22 Total: -15.50 kcal
Total: -70.13 4.07 -66.07 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000413014761.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.470 kcal
(2) G-P(sol) polarization free energy of solvation -70.134 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.664 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.067 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.597 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds