Wall clock time and date at job start Sun Mar 29 2020 22:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31747 * 123.76507 * 2 1 4 4 N 1.27577 * 118.27103 * 179.97438 * 3 2 1 5 5 S 1.56503 * 109.22238 * 359.71083 * 4 3 2 6 6 C 1.35343 * 123.77116 * 179.97438 * 2 1 3 7 7 C 1.50704 * 127.92080 * 0.02562 * 6 2 1 8 8 N 1.46497 * 109.46917 * 90.00555 * 7 6 2 9 9 C 1.36937 * 120.00323 * 89.99742 * 8 7 6 10 10 H 1.07994 * 120.00187 * 218.10293 * 9 8 7 11 11 C 1.38815 * 119.99127 * 37.82963 * 9 8 7 12 12 N 1.31613 * 120.00413 * 20.76582 * 11 9 8 13 13 Si 1.86800 * 119.99539 * 200.75973 * 11 9 8 14 14 H 1.48500 * 109.47053 * 60.00077 * 13 11 9 15 15 H 1.48497 * 109.47400 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47415 * 300.00232 * 13 11 9 17 17 C 1.46500 * 120.00006 * 269.99738 * 8 7 6 18 18 C 1.52998 * 117.49983 * 192.26428 * 17 8 7 19 19 C 1.53003 * 117.49840 * 123.60054 * 17 8 7 20 20 H 1.09003 * 109.46939 * 270.01731 * 1 2 3 21 21 H 1.09000 * 109.47490 * 30.01870 * 1 2 3 22 22 H 1.09001 * 109.47026 * 150.02081 * 1 2 3 23 23 H 1.09000 * 109.47197 * 330.00440 * 7 6 2 24 24 H 1.08994 * 109.47070 * 210.00448 * 7 6 2 25 25 H 0.97001 * 120.00137 * 174.95182 * 12 11 9 26 26 H 1.09000 * 115.55435 * 337.93655 * 17 8 7 27 27 H 1.08992 * 117.49983 * 0.02562 * 18 17 8 28 28 H 1.09003 * 117.49914 * 145.02389 * 18 17 8 29 29 H 1.08999 * 117.50292 * 214.97481 * 19 17 8 30 30 H 1.08992 * 117.50047 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2392 1.0952 0.0000 4 7 3.5091 0.9731 0.0005 5 16 3.8805 -0.5472 0.0085 6 6 2.2593 -1.1251 0.0005 7 6 1.7859 -2.5558 0.0006 8 7 1.6332 -3.0197 -1.3806 9 6 2.6877 -3.6090 -2.0256 10 1 2.8586 -3.4110 -3.0733 11 6 3.5401 -4.4563 -1.3310 12 7 3.1398 -5.0187 -0.2104 13 14 5.2553 -4.7985 -1.9871 14 1 6.0129 -3.5247 -2.0800 15 1 5.9602 -5.7283 -1.0686 16 1 5.1561 -5.4148 -3.3345 17 6 0.3523 -2.8531 -2.0718 18 6 0.1590 -3.6028 -3.3915 19 6 0.3582 -2.0850 -3.3950 20 1 -0.3633 0.0003 1.0277 21 1 -0.3634 0.8898 -0.5141 22 1 -0.3633 -0.8902 -0.5135 23 1 0.8266 -2.6211 0.5140 24 1 2.5165 -3.1802 0.5149 25 1 3.7065 -5.6669 0.2363 26 1 -0.5186 -2.7373 -1.4266 27 1 0.9846 -4.2202 -3.7452 28 1 -0.8391 -3.9797 -3.6146 29 1 -0.5088 -1.4642 -3.6205 30 1 1.3150 -1.7032 -3.7510 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582763707.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:28 Heat of formation + Delta-G solvation = 110.633387 kcal Electronic energy + Delta-G solvation = -15294.480700 eV Core-core repulsion = 12832.862210 eV Total energy + Delta-G solvation = -2461.618490 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.10869 -37.28437 -34.14121 -32.75417 -30.73385 -28.08947 -26.36098 -24.95750 -23.27572 -21.49325 -20.20833 -19.50700 -17.81231 -16.62146 -15.63880 -15.18497 -14.63494 -14.39079 -13.84402 -13.15232 -12.88554 -12.58916 -12.51623 -12.10332 -11.63303 -11.44598 -11.06330 -10.96589 -10.75629 -10.72280 -10.40535 -10.16869 -9.81509 -9.53018 -9.35167 -8.91044 -8.74778 -8.62922 -6.79442 -6.13753 -3.65799 1.02352 1.98630 2.54436 2.90970 3.21866 3.28336 3.31724 4.22086 4.78863 4.79391 5.03498 5.10676 5.48251 5.69951 5.72440 5.88923 5.91225 6.03372 6.11617 6.17796 6.37426 6.40532 6.50865 6.53304 6.84063 7.03971 7.17630 7.57168 8.20699 8.49935 8.83690 9.44855 10.01300 10.87900 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.020065 B = 0.012411 C = 0.008924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.105180 B = 2255.551891 C = 3136.961076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.011 4.011 3 N -0.249 5.249 4 N -0.333 5.333 5 S 0.392 5.608 6 C -0.219 4.219 7 C 0.214 3.786 8 N -0.533 5.533 9 C -0.264 4.264 10 H 0.066 0.934 11 C 0.023 3.977 12 N -0.876 5.876 13 Si 0.896 3.104 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.277 1.277 17 C 0.125 3.875 18 C -0.189 4.189 19 C -0.225 4.225 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.058 0.942 24 H 0.115 0.885 25 H 0.264 0.736 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.571 3.258 0.628 4.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.157 4.157 3 N -0.116 5.116 4 N -0.311 5.311 5 S 0.528 5.472 6 C -0.360 4.360 7 C 0.085 3.915 8 N -0.248 5.248 9 C -0.395 4.395 10 H 0.083 0.917 11 C -0.180 4.180 12 N -0.517 5.517 13 Si 0.723 3.277 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.203 1.203 17 C 0.016 3.984 18 C -0.227 4.227 19 C -0.266 4.266 20 H 0.088 0.912 21 H 0.088 0.912 22 H 0.098 0.902 23 H 0.076 0.924 24 H 0.132 0.868 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.119 0.881 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.821 4.282 0.834 4.728 hybrid contribution -0.489 -0.741 -0.589 1.066 sum -2.310 3.541 0.245 4.235 Atomic orbital electron populations 1.20153 0.86174 1.03356 1.02316 1.21996 0.99583 0.87164 1.06910 1.71043 0.97338 1.28479 1.14790 1.78628 1.10175 1.16077 1.26261 1.81492 1.12121 1.00365 1.53211 1.28654 0.97622 1.05215 1.04521 1.19583 1.00807 0.83409 0.87734 1.43373 1.07007 1.63062 1.11390 1.18986 1.03471 1.21682 0.95332 0.91666 1.25257 0.99821 0.95620 0.97318 1.69846 1.36908 1.26230 1.18667 0.86458 0.83979 0.78484 0.78730 1.19946 1.21027 1.20272 1.21169 0.89335 1.01030 0.86869 1.23095 1.01451 0.94184 1.04018 1.23375 1.01393 0.94137 1.07672 0.91220 0.91174 0.90206 0.92411 0.86801 0.92564 0.89013 0.88142 0.90477 0.90665 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.01 36.00 0.36 -0.53 16 2 C -0.01 -0.20 6.89 -83.66 -0.58 -0.78 16 3 N -0.25 -5.13 11.68 32.45 0.38 -4.75 16 4 N -0.33 -6.90 12.54 60.35 0.76 -6.15 16 5 S 0.39 7.70 23.40 -107.50 -2.52 5.18 16 6 C -0.22 -4.36 6.25 -35.34 -0.22 -4.58 16 7 C 0.21 4.47 5.44 -5.19 -0.03 4.44 16 8 N -0.53 -11.85 2.76 -167.03 -0.46 -12.31 16 9 C -0.26 -6.45 8.08 -15.06 -0.12 -6.57 16 10 H 0.07 1.64 7.31 -52.49 -0.38 1.26 16 11 C 0.02 0.56 4.97 -17.43 -0.09 0.47 16 12 N -0.88 -22.35 11.44 55.49 0.63 -21.72 16 13 Si 0.90 19.74 29.60 -169.99 -5.03 14.71 16 14 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 17 C 0.12 2.42 5.76 -67.93 -0.39 2.03 16 18 C -0.19 -3.48 9.80 -26.69 -0.26 -3.74 16 19 C -0.23 -4.08 10.15 -26.69 -0.27 -4.35 16 20 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 21 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.08 1.17 5.79 -51.93 -0.30 0.87 16 23 H 0.06 1.11 7.67 -51.93 -0.40 0.71 16 24 H 0.11 2.66 5.51 -51.93 -0.29 2.37 16 25 H 0.26 6.53 8.32 -40.82 -0.34 6.19 16 26 H 0.09 1.59 7.19 -51.93 -0.37 1.22 16 27 H 0.10 2.06 6.89 -51.93 -0.36 1.70 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 269.48 15.07 4.06 4.06 Total: -1.00 -26.48 269.48 -7.12 -33.61 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -3.35 Total: 0.99 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -1.60 Total: -13.62 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 1.31 Total: -44.92 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.71 kcal Atomic # 16 Polarization: 7.70 SS G_CDS: -2.52 Total: 5.18 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -26.48 -7.12 -33.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582763707.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.239 kcal (2) G-P(sol) polarization free energy of solvation -26.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds