Wall clock time and date at job start Sun Mar 29 2020 22:27:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 N 1.31747 * 123.76507 * 2 1
4 4 N 1.27577 * 118.27103 * 179.97438 * 3 2 1
5 5 S 1.56503 * 109.22238 * 359.71083 * 4 3 2
6 6 C 1.35343 * 123.77116 * 179.97438 * 2 1 3
7 7 C 1.50704 * 127.92080 * 0.02562 * 6 2 1
8 8 N 1.46497 * 109.46917 * 90.00555 * 7 6 2
9 9 C 1.36937 * 120.00323 * 89.99742 * 8 7 6
10 10 H 1.07994 * 120.00187 * 218.10293 * 9 8 7
11 11 C 1.38815 * 119.99127 * 37.82963 * 9 8 7
12 12 N 1.31613 * 120.00413 * 20.76582 * 11 9 8
13 13 Si 1.86800 * 119.99539 * 200.75973 * 11 9 8
14 14 H 1.48500 * 109.47053 * 60.00077 * 13 11 9
15 15 H 1.48497 * 109.47400 * 180.02562 * 13 11 9
16 16 H 1.48502 * 109.47415 * 300.00232 * 13 11 9
17 17 C 1.46500 * 120.00006 * 269.99738 * 8 7 6
18 18 C 1.52998 * 117.49983 * 192.26428 * 17 8 7
19 19 C 1.53003 * 117.49840 * 123.60054 * 17 8 7
20 20 H 1.09003 * 109.46939 * 270.01731 * 1 2 3
21 21 H 1.09000 * 109.47490 * 30.01870 * 1 2 3
22 22 H 1.09001 * 109.47026 * 150.02081 * 1 2 3
23 23 H 1.09000 * 109.47197 * 330.00440 * 7 6 2
24 24 H 1.08994 * 109.47070 * 210.00448 * 7 6 2
25 25 H 0.97001 * 120.00137 * 174.95182 * 12 11 9
26 26 H 1.09000 * 115.55435 * 337.93655 * 17 8 7
27 27 H 1.08992 * 117.49983 * 0.02562 * 18 17 8
28 28 H 1.09003 * 117.49914 * 145.02389 * 18 17 8
29 29 H 1.08999 * 117.50292 * 214.97481 * 19 17 8
30 30 H 1.08992 * 117.50047 * 359.97438 * 19 17 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2392 1.0952 0.0000
4 7 3.5091 0.9731 0.0005
5 16 3.8805 -0.5472 0.0085
6 6 2.2593 -1.1251 0.0005
7 6 1.7859 -2.5558 0.0006
8 7 1.6332 -3.0197 -1.3806
9 6 2.6877 -3.6090 -2.0256
10 1 2.8586 -3.4110 -3.0733
11 6 3.5401 -4.4563 -1.3310
12 7 3.1398 -5.0187 -0.2104
13 14 5.2553 -4.7985 -1.9871
14 1 6.0129 -3.5247 -2.0800
15 1 5.9602 -5.7283 -1.0686
16 1 5.1561 -5.4148 -3.3345
17 6 0.3523 -2.8531 -2.0718
18 6 0.1590 -3.6028 -3.3915
19 6 0.3582 -2.0850 -3.3950
20 1 -0.3633 0.0003 1.0277
21 1 -0.3634 0.8898 -0.5141
22 1 -0.3633 -0.8902 -0.5135
23 1 0.8266 -2.6211 0.5140
24 1 2.5165 -3.1802 0.5149
25 1 3.7065 -5.6669 0.2363
26 1 -0.5186 -2.7373 -1.4266
27 1 0.9846 -4.2202 -3.7452
28 1 -0.8391 -3.9797 -3.6146
29 1 -0.5088 -1.4642 -3.6205
30 1 1.3150 -1.7032 -3.7510
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000582763707.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:27:28
Heat of formation + Delta-G solvation = 96.099200 kcal
Electronic energy + Delta-G solvation = -15295.110950 eV
Core-core repulsion = 12832.862210 eV
Total energy + Delta-G solvation = -2462.248740 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 239.079 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-41.67594 -38.85714 -35.72786 -34.38257 -32.39402 -29.61915 -27.84778 -26.68429
-24.89264 -22.94329 -21.80177 -21.10042 -19.33244 -18.36451 -17.28213 -16.77246
-16.26220 -16.01975 -15.45657 -14.73324 -14.42314 -13.93730 -13.81773 -13.57536
-13.25529 -13.11782 -12.73603 -12.58449 -12.49451 -12.19347 -12.06985 -11.81648
-11.42190 -11.00144 -10.94052 -10.52718 -10.44581 -10.21527 -8.53562 -7.96011
-5.52345 -0.56273 0.42631 0.96140 1.37962 1.45065 1.49521 1.53670
2.43560 3.10941 3.32584 3.41969 3.49503 4.02441 4.21240 4.28961
4.47164 4.52785 4.69804 4.81305 4.83318 4.91901 4.96537 5.08557
5.26498 5.36084 5.48566 5.55619 5.66985 6.39693 6.92766 7.05165
7.71214 8.22823 9.02226
Molecular weight = 239.08amu
Principal moments of inertia in cm(-1)
A = 0.020065 B = 0.012411 C = 0.008924
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1395.105180 B = 2255.551891 C = 3136.961076
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 C -0.001 4.001
3 N -0.265 5.265
4 N -0.344 5.344
5 S 0.401 5.599
6 C -0.230 4.230
7 C 0.221 3.779
8 N -0.549 5.549
9 C -0.267 4.267
10 H 0.050 0.950
11 C -0.011 4.011
12 N -0.901 5.901
13 Si 0.935 3.065
14 H -0.274 1.274
15 H -0.285 1.285
16 H -0.278 1.278
17 C 0.108 3.892
18 C -0.188 4.188
19 C -0.211 4.211
20 H 0.094 0.906
21 H 0.083 0.917
22 H 0.086 0.914
23 H 0.076 0.924
24 H 0.090 0.910
25 H 0.261 0.739
26 H 0.119 0.881
27 H 0.072 0.928
28 H 0.106 0.894
29 H 0.105 0.895
30 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.007 4.013 0.606 6.445
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.147 4.147
3 N -0.132 5.132
4 N -0.322 5.322
5 S 0.537 5.463
6 C -0.371 4.371
7 C 0.092 3.908
8 N -0.265 5.265
9 C -0.397 4.397
10 H 0.068 0.932
11 C -0.211 4.211
12 N -0.542 5.542
13 Si 0.762 3.238
14 H -0.200 1.200
15 H -0.210 1.210
16 H -0.204 1.204
17 C 0.001 3.999
18 C -0.227 4.227
19 C -0.251 4.251
20 H 0.112 0.888
21 H 0.102 0.898
22 H 0.104 0.896
23 H 0.094 0.906
24 H 0.107 0.893
25 H 0.071 0.929
26 H 0.136 0.864
27 H 0.090 0.910
28 H 0.124 0.876
29 H 0.124 0.876
30 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -3.263 5.049 0.795 6.064
hybrid contribution -0.081 -0.884 -0.576 1.058
sum -3.344 4.165 0.219 5.346
Atomic orbital electron populations
1.20346 0.83165 1.04302 1.04214 1.22581 1.01355 0.86131 1.04651
1.71086 0.97312 1.29223 1.15538 1.78590 1.10668 1.16613 1.26364
1.81458 1.12445 0.99918 1.52512 1.28618 0.97790 1.05216 1.05498
1.19385 1.00983 0.83259 0.87157 1.43480 1.07650 1.63710 1.11624
1.18931 1.04325 1.21637 0.94852 0.93242 1.25655 1.01755 0.95934
0.97727 1.69919 1.37533 1.27171 1.19613 0.85845 0.81649 0.78159
0.78125 1.19959 1.21026 1.20391 1.21478 0.89028 1.01918 0.87509
1.23089 1.01969 0.94174 1.03437 1.23297 1.01251 0.94208 1.06345
0.88791 0.89846 0.89557 0.90552 0.89254 0.92938 0.86375 0.90959
0.87576 0.87641 0.92519
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.58 10.01 71.24 0.71 -0.87 16
2 C 0.00 -0.05 6.89 41.90 0.29 0.24 16
3 N -0.26 -10.40 11.68 -51.25 -0.60 -11.00 16
4 N -0.34 -13.87 12.54 37.02 0.46 -13.41 16
5 S 0.40 15.47 23.40 -56.49 -1.32 14.15 16
6 C -0.23 -8.85 6.25 25.02 0.16 -8.69 16
7 C 0.22 9.00 5.44 85.63 0.47 9.47 16
8 N -0.55 -23.89 2.76 -682.35 -1.88 -25.77 16
9 C -0.27 -13.07 8.08 84.03 0.68 -12.39 16
10 H 0.05 2.54 7.31 -2.91 -0.02 2.52 16
11 C -0.01 -0.53 4.97 84.86 0.42 -0.11 16
12 N -0.90 -46.29 11.44 21.65 0.25 -46.05 16
13 Si 0.93 40.75 29.60 68.60 2.03 42.78 16
14 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16
15 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16
16 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16
17 C 0.11 3.96 5.76 44.99 0.26 4.22 16
18 C -0.19 -6.60 9.80 30.62 0.30 -6.30 16
19 C -0.21 -7.16 10.15 30.62 0.31 -6.85 16
20 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16
21 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16
22 H 0.09 2.18 5.79 -2.39 -0.01 2.17 16
23 H 0.08 2.77 7.67 -2.39 -0.02 2.75 16
24 H 0.09 4.16 5.51 -2.39 -0.01 4.15 16
25 H 0.26 13.06 8.32 -92.71 -0.77 12.29 16
26 H 0.12 3.66 7.19 -2.39 -0.02 3.64 16
27 H 0.07 2.96 6.89 -2.39 -0.02 2.94 16
28 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16
29 H 0.11 2.94 8.14 -2.39 -0.02 2.93 16
30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16
Total: -1.00 -55.64 269.48 3.68 -51.95
By element:
Atomic # 1 Polarization: 7.47 SS G_CDS: 1.15 Total: 8.62 kcal
Atomic # 6 Polarization: -24.88 SS G_CDS: 3.59 Total: -21.28 kcal
Atomic # 7 Polarization: -94.45 SS G_CDS: -1.77 Total: -96.22 kcal
Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal
Atomic # 16 Polarization: 15.47 SS G_CDS: -1.32 Total: 14.15 kcal
Total: -55.64 3.68 -51.95 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000582763707.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 148.052 kcal
(2) G-P(sol) polarization free energy of solvation -55.637 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.414 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.953 kcal
(6) G-S(sol) free energy of system = (1) + (5) 96.099 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds