Wall clock time and date at job start Sun Mar 29 2020 22:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31747 * 123.76507 * 2 1 4 4 N 1.27577 * 118.27103 * 179.97438 * 3 2 1 5 5 S 1.56503 * 109.22238 * 359.71083 * 4 3 2 6 6 C 1.35343 * 123.77116 * 179.97438 * 2 1 3 7 7 C 1.50704 * 127.92080 * 0.02562 * 6 2 1 8 8 N 1.46497 * 109.46917 * 90.00555 * 7 6 2 9 9 C 1.36937 * 120.00323 * 89.99742 * 8 7 6 10 10 H 1.07994 * 120.00187 * 218.10293 * 9 8 7 11 11 C 1.38815 * 119.99127 * 37.82963 * 9 8 7 12 12 N 1.31613 * 120.00413 * 20.76582 * 11 9 8 13 13 Si 1.86800 * 119.99539 * 200.75973 * 11 9 8 14 14 H 1.48500 * 109.47053 * 60.00077 * 13 11 9 15 15 H 1.48497 * 109.47400 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47415 * 300.00232 * 13 11 9 17 17 C 1.46500 * 120.00006 * 269.99738 * 8 7 6 18 18 C 1.52998 * 117.49983 * 192.26428 * 17 8 7 19 19 C 1.53003 * 117.49840 * 123.60054 * 17 8 7 20 20 H 1.09003 * 109.46939 * 270.01731 * 1 2 3 21 21 H 1.09000 * 109.47490 * 30.01870 * 1 2 3 22 22 H 1.09001 * 109.47026 * 150.02081 * 1 2 3 23 23 H 1.09000 * 109.47197 * 330.00440 * 7 6 2 24 24 H 1.08994 * 109.47070 * 210.00448 * 7 6 2 25 25 H 0.97001 * 120.00137 * 174.95182 * 12 11 9 26 26 H 1.09000 * 115.55435 * 337.93655 * 17 8 7 27 27 H 1.08992 * 117.49983 * 0.02562 * 18 17 8 28 28 H 1.09003 * 117.49914 * 145.02389 * 18 17 8 29 29 H 1.08999 * 117.50292 * 214.97481 * 19 17 8 30 30 H 1.08992 * 117.50047 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2392 1.0952 0.0000 4 7 3.5091 0.9731 0.0005 5 16 3.8805 -0.5472 0.0085 6 6 2.2593 -1.1251 0.0005 7 6 1.7859 -2.5558 0.0006 8 7 1.6332 -3.0197 -1.3806 9 6 2.6877 -3.6090 -2.0256 10 1 2.8586 -3.4110 -3.0733 11 6 3.5401 -4.4563 -1.3310 12 7 3.1398 -5.0187 -0.2104 13 14 5.2553 -4.7985 -1.9871 14 1 6.0129 -3.5247 -2.0800 15 1 5.9602 -5.7283 -1.0686 16 1 5.1561 -5.4148 -3.3345 17 6 0.3523 -2.8531 -2.0718 18 6 0.1590 -3.6028 -3.3915 19 6 0.3582 -2.0850 -3.3950 20 1 -0.3633 0.0003 1.0277 21 1 -0.3634 0.8898 -0.5141 22 1 -0.3633 -0.8902 -0.5135 23 1 0.8266 -2.6211 0.5140 24 1 2.5165 -3.1802 0.5149 25 1 3.7065 -5.6669 0.2363 26 1 -0.5186 -2.7373 -1.4266 27 1 0.9846 -4.2202 -3.7452 28 1 -0.8391 -3.9797 -3.6146 29 1 -0.5088 -1.4642 -3.6205 30 1 1.3150 -1.7032 -3.7510 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582763707.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:28 Heat of formation + Delta-G solvation = 96.099200 kcal Electronic energy + Delta-G solvation = -15295.110950 eV Core-core repulsion = 12832.862210 eV Total energy + Delta-G solvation = -2462.248740 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.67594 -38.85714 -35.72786 -34.38257 -32.39402 -29.61915 -27.84778 -26.68429 -24.89264 -22.94329 -21.80177 -21.10042 -19.33244 -18.36451 -17.28213 -16.77246 -16.26220 -16.01975 -15.45657 -14.73324 -14.42314 -13.93730 -13.81773 -13.57536 -13.25529 -13.11782 -12.73603 -12.58449 -12.49451 -12.19347 -12.06985 -11.81648 -11.42190 -11.00144 -10.94052 -10.52718 -10.44581 -10.21527 -8.53562 -7.96011 -5.52345 -0.56273 0.42631 0.96140 1.37962 1.45065 1.49521 1.53670 2.43560 3.10941 3.32584 3.41969 3.49503 4.02441 4.21240 4.28961 4.47164 4.52785 4.69804 4.81305 4.83318 4.91901 4.96537 5.08557 5.26498 5.36084 5.48566 5.55619 5.66985 6.39693 6.92766 7.05165 7.71214 8.22823 9.02226 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.020065 B = 0.012411 C = 0.008924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.105180 B = 2255.551891 C = 3136.961076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.001 4.001 3 N -0.265 5.265 4 N -0.344 5.344 5 S 0.401 5.599 6 C -0.230 4.230 7 C 0.221 3.779 8 N -0.549 5.549 9 C -0.267 4.267 10 H 0.050 0.950 11 C -0.011 4.011 12 N -0.901 5.901 13 Si 0.935 3.065 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.278 1.278 17 C 0.108 3.892 18 C -0.188 4.188 19 C -0.211 4.211 20 H 0.094 0.906 21 H 0.083 0.917 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.261 0.739 26 H 0.119 0.881 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.007 4.013 0.606 6.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.147 4.147 3 N -0.132 5.132 4 N -0.322 5.322 5 S 0.537 5.463 6 C -0.371 4.371 7 C 0.092 3.908 8 N -0.265 5.265 9 C -0.397 4.397 10 H 0.068 0.932 11 C -0.211 4.211 12 N -0.542 5.542 13 Si 0.762 3.238 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.204 1.204 17 C 0.001 3.999 18 C -0.227 4.227 19 C -0.251 4.251 20 H 0.112 0.888 21 H 0.102 0.898 22 H 0.104 0.896 23 H 0.094 0.906 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.136 0.864 27 H 0.090 0.910 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.263 5.049 0.795 6.064 hybrid contribution -0.081 -0.884 -0.576 1.058 sum -3.344 4.165 0.219 5.346 Atomic orbital electron populations 1.20346 0.83165 1.04302 1.04214 1.22581 1.01355 0.86131 1.04651 1.71086 0.97312 1.29223 1.15538 1.78590 1.10668 1.16613 1.26364 1.81458 1.12445 0.99918 1.52512 1.28618 0.97790 1.05216 1.05498 1.19385 1.00983 0.83259 0.87157 1.43480 1.07650 1.63710 1.11624 1.18931 1.04325 1.21637 0.94852 0.93242 1.25655 1.01755 0.95934 0.97727 1.69919 1.37533 1.27171 1.19613 0.85845 0.81649 0.78159 0.78125 1.19959 1.21026 1.20391 1.21478 0.89028 1.01918 0.87509 1.23089 1.01969 0.94174 1.03437 1.23297 1.01251 0.94208 1.06345 0.88791 0.89846 0.89557 0.90552 0.89254 0.92938 0.86375 0.90959 0.87576 0.87641 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.58 10.01 71.24 0.71 -0.87 16 2 C 0.00 -0.05 6.89 41.90 0.29 0.24 16 3 N -0.26 -10.40 11.68 -51.25 -0.60 -11.00 16 4 N -0.34 -13.87 12.54 37.02 0.46 -13.41 16 5 S 0.40 15.47 23.40 -56.49 -1.32 14.15 16 6 C -0.23 -8.85 6.25 25.02 0.16 -8.69 16 7 C 0.22 9.00 5.44 85.63 0.47 9.47 16 8 N -0.55 -23.89 2.76 -682.35 -1.88 -25.77 16 9 C -0.27 -13.07 8.08 84.03 0.68 -12.39 16 10 H 0.05 2.54 7.31 -2.91 -0.02 2.52 16 11 C -0.01 -0.53 4.97 84.86 0.42 -0.11 16 12 N -0.90 -46.29 11.44 21.65 0.25 -46.05 16 13 Si 0.93 40.75 29.60 68.60 2.03 42.78 16 14 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 15 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 16 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 17 C 0.11 3.96 5.76 44.99 0.26 4.22 16 18 C -0.19 -6.60 9.80 30.62 0.30 -6.30 16 19 C -0.21 -7.16 10.15 30.62 0.31 -6.85 16 20 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 21 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.09 2.18 5.79 -2.39 -0.01 2.17 16 23 H 0.08 2.77 7.67 -2.39 -0.02 2.75 16 24 H 0.09 4.16 5.51 -2.39 -0.01 4.15 16 25 H 0.26 13.06 8.32 -92.71 -0.77 12.29 16 26 H 0.12 3.66 7.19 -2.39 -0.02 3.64 16 27 H 0.07 2.96 6.89 -2.39 -0.02 2.94 16 28 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 29 H 0.11 2.94 8.14 -2.39 -0.02 2.93 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -55.64 269.48 3.68 -51.95 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.15 Total: 8.62 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: 3.59 Total: -21.28 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -1.77 Total: -96.22 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Atomic # 16 Polarization: 15.47 SS G_CDS: -1.32 Total: 14.15 kcal Total: -55.64 3.68 -51.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582763707.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.052 kcal (2) G-P(sol) polarization free energy of solvation -55.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds