Wall clock time and date at job start Sun Mar 29 2020 22:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36488 * 124.77968 * 2 1 4 4 C 1.34348 * 109.17026 * 179.97438 * 3 2 1 5 5 C 1.46902 * 106.35219 * 359.97438 * 4 3 2 6 6 C 1.46456 * 127.06371 * 179.97438 * 5 4 3 7 7 O 1.21346 * 120.00223 * 179.74584 * 6 5 4 8 8 C 1.50700 * 119.99899 * 0.02562 * 6 5 4 9 9 S 1.81394 * 109.47177 * 179.97438 * 8 6 5 10 10 C 1.81400 * 103.00249 * 180.02562 * 9 8 6 11 11 C 1.50699 * 109.47380 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00120 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99843 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99947 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99911 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47130 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46971 * 119.99438 * 15 13 11 18 18 H 1.48498 * 109.47291 * 239.99931 * 15 13 11 19 19 C 1.34487 * 124.77407 * 180.28666 * 2 1 3 20 20 H 1.08994 * 109.46781 * 90.03119 * 1 2 3 21 21 H 1.09006 * 109.47172 * 210.02683 * 1 2 3 22 22 H 1.08998 * 109.47164 * 330.02520 * 1 2 3 23 23 H 1.07998 * 125.41201 * 359.97438 * 3 2 1 24 24 H 1.07996 * 126.82767 * 180.02562 * 4 3 2 25 25 H 1.08997 * 109.47392 * 300.00171 * 8 6 5 26 26 H 1.09004 * 109.46932 * 59.99510 * 8 6 5 27 27 H 1.09006 * 109.46788 * 300.00099 * 10 9 8 28 28 H 1.09000 * 109.46874 * 59.99656 * 10 9 8 29 29 H 0.97004 * 120.00003 * 179.97438 * 14 13 11 30 30 H 1.08002 * 125.92672 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2436 1.1210 0.0000 4 6 3.5375 0.7595 0.0006 5 6 3.5566 -0.7094 0.0016 6 6 4.7366 -1.5768 0.0019 7 8 4.6030 -2.7829 0.0075 8 6 6.1167 -0.9716 0.0018 9 16 7.3573 -2.2949 0.0031 10 6 8.9259 -1.3838 0.0036 11 6 10.0739 -2.3601 0.0041 12 1 9.8794 -3.4224 0.0045 13 6 11.3726 -1.8970 0.0050 14 7 11.6095 -0.6034 0.0050 15 14 12.7957 -3.1071 0.0063 16 1 12.2658 -4.4944 0.0054 17 1 13.6271 -2.8947 -1.2057 18 1 13.6253 -2.8943 1.2194 19 6 2.2321 -1.1047 -0.0055 20 1 -0.3633 -0.0006 -1.0276 21 1 -0.3634 -0.8898 0.5143 22 1 -0.3633 0.8902 0.5134 23 1 1.8776 2.1371 -0.0004 24 1 4.3936 1.4179 0.0011 25 1 6.2432 -0.3553 -0.8883 26 1 6.2429 -0.3547 0.8916 27 1 8.9825 -0.7574 -0.8867 28 1 8.9814 -0.7566 0.8933 29 1 12.5232 -0.2776 0.0061 30 1 1.8751 -2.1240 -0.0110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583250058.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:54 Heat of formation + Delta-G solvation = 7.049530 kcal Electronic energy + Delta-G solvation = -13704.074862 eV Core-core repulsion = 11205.671887 eV Total energy + Delta-G solvation = -2498.402975 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.23979 -38.40014 -33.08135 -33.03333 -30.00700 -29.13553 -28.39993 -26.56669 -23.11262 -22.35444 -20.22999 -19.00602 -17.36971 -16.42821 -15.65415 -15.37468 -15.07457 -14.64020 -14.42107 -14.24696 -13.70074 -13.24532 -12.76891 -12.72322 -12.37698 -12.31047 -12.16475 -11.94179 -11.68112 -10.83545 -10.62661 -9.92402 -9.58030 -9.32493 -8.75905 -8.66130 -8.54808 -8.42134 -6.53003 -6.12414 -4.15423 1.52117 2.26779 2.54152 2.74247 3.30731 3.37524 3.41131 3.45277 3.97187 4.34935 4.42598 4.59268 4.73896 4.76994 4.86964 4.99305 5.24919 5.35849 5.62527 5.65596 5.80725 5.89751 6.13766 6.63041 6.89290 7.03677 7.18525 7.19740 7.83472 7.99826 8.10502 8.87107 9.47089 10.99258 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.073998 B = 0.004028 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.298783 B = 6949.711113 C = 7302.258247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.446 5.446 3 C -0.028 4.028 4 C -0.152 4.152 5 C -0.253 4.253 6 C 0.441 3.559 7 O -0.452 6.452 8 C -0.143 4.143 9 S -0.262 6.262 10 C 0.078 3.922 11 C -0.507 4.507 12 H 0.068 0.932 13 C 0.064 3.936 14 N -0.894 5.894 15 Si 0.906 3.094 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.071 3.929 20 H 0.075 0.925 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.166 0.834 24 H 0.150 0.850 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.264 0.736 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.785 5.728 0.020 22.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.122 5.122 3 C -0.154 4.154 4 C -0.175 4.175 5 C -0.263 4.263 6 C 0.318 3.682 7 O -0.327 6.327 8 C -0.291 4.291 9 S -0.035 6.035 10 C -0.069 4.069 11 C -0.547 4.547 12 H 0.086 0.914 13 C -0.140 4.140 14 N -0.533 5.533 15 Si 0.733 3.267 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.065 4.065 20 H 0.094 0.906 21 H 0.104 0.896 22 H 0.104 0.896 23 H 0.183 0.817 24 H 0.167 0.833 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -22.245 4.177 0.027 22.634 hybrid contribution 0.993 1.144 -0.012 1.515 sum -21.252 5.321 0.015 21.909 Atomic orbital electron populations 1.22125 0.77032 1.04649 1.03541 1.43607 1.06755 1.06081 1.55755 1.21717 0.90704 0.91101 1.11856 1.22168 0.96117 0.93420 1.05808 1.21235 0.92954 0.94178 1.17897 1.20841 0.88246 0.87804 0.71287 1.90541 1.88558 1.16579 1.37026 1.23710 0.96244 1.03141 1.06037 1.87083 1.02770 1.15603 1.98038 1.21120 0.88595 0.97200 0.99998 1.20726 0.89196 0.93090 1.51677 0.91378 1.24965 0.98698 0.95529 0.94773 1.69968 1.20694 1.12524 1.50126 0.86301 0.81526 0.81231 0.77643 1.19370 1.20789 1.20784 1.22313 0.90065 0.91690 1.02441 0.90648 0.89610 0.89586 0.81706 0.83263 0.87904 0.87889 0.94670 0.94669 0.92662 0.80775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 11.03 59.85 0.66 0.96 16 2 N -0.45 -4.03 3.08 -124.16 -0.38 -4.41 16 3 C -0.03 -0.26 11.31 -16.85 -0.19 -0.45 16 4 C -0.15 -1.78 10.70 -37.45 -0.40 -2.18 16 5 C -0.25 -3.61 6.29 -103.09 -0.65 -4.26 16 6 C 0.44 7.83 7.14 -31.00 -0.22 7.61 16 7 O -0.45 -9.38 16.44 5.50 0.09 -9.29 16 8 C -0.14 -2.64 5.98 36.01 0.22 -2.42 16 9 S -0.26 -6.28 20.79 -107.50 -2.24 -8.51 16 10 C 0.08 2.11 5.70 36.01 0.21 2.31 16 11 C -0.51 -14.87 9.13 -34.44 -0.31 -15.19 16 12 H 0.07 2.01 7.71 -52.49 -0.40 1.61 16 13 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 14 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 15 Si 0.91 21.97 29.54 -169.99 -5.02 16.95 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C 0.07 0.82 11.19 -16.39 -0.18 0.64 16 20 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 21 H 0.09 0.28 8.13 -51.93 -0.42 -0.14 16 22 H 0.09 0.24 8.13 -51.93 -0.42 -0.19 16 23 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 24 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 25 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 26 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 27 H 0.04 0.97 8.14 -51.92 -0.42 0.55 16 28 H 0.04 0.97 8.14 -51.92 -0.42 0.55 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 285.53 15.07 4.30 4.30 Total: -1.00 -34.54 285.53 -7.25 -41.79 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -3.77 Total: -3.78 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -0.98 Total: -11.24 kcal Atomic # 7 Polarization: -30.57 SS G_CDS: 0.35 Total: -30.22 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -6.28 SS G_CDS: -2.24 Total: -8.51 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -34.54 -7.25 -41.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583250058.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.842 kcal (2) G-P(sol) polarization free energy of solvation -34.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds