Wall clock time and date at job start Sun Mar 29 2020 22:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36488 * 124.77968 * 2 1 4 4 C 1.34348 * 109.17026 * 179.97438 * 3 2 1 5 5 C 1.46902 * 106.35219 * 359.97438 * 4 3 2 6 6 C 1.46456 * 127.06371 * 179.97438 * 5 4 3 7 7 O 1.21346 * 120.00223 * 179.74584 * 6 5 4 8 8 C 1.50700 * 119.99899 * 0.02562 * 6 5 4 9 9 S 1.81394 * 109.47177 * 179.97438 * 8 6 5 10 10 C 1.81400 * 103.00249 * 180.02562 * 9 8 6 11 11 C 1.50699 * 109.47380 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00120 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99843 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99947 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99911 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47130 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46971 * 119.99438 * 15 13 11 18 18 H 1.48498 * 109.47291 * 239.99931 * 15 13 11 19 19 C 1.34487 * 124.77407 * 180.28666 * 2 1 3 20 20 H 1.08994 * 109.46781 * 90.03119 * 1 2 3 21 21 H 1.09006 * 109.47172 * 210.02683 * 1 2 3 22 22 H 1.08998 * 109.47164 * 330.02520 * 1 2 3 23 23 H 1.07998 * 125.41201 * 359.97438 * 3 2 1 24 24 H 1.07996 * 126.82767 * 180.02562 * 4 3 2 25 25 H 1.08997 * 109.47392 * 300.00171 * 8 6 5 26 26 H 1.09004 * 109.46932 * 59.99510 * 8 6 5 27 27 H 1.09006 * 109.46788 * 300.00099 * 10 9 8 28 28 H 1.09000 * 109.46874 * 59.99656 * 10 9 8 29 29 H 0.97004 * 120.00003 * 179.97438 * 14 13 11 30 30 H 1.08002 * 125.92672 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2436 1.1210 0.0000 4 6 3.5375 0.7595 0.0006 5 6 3.5566 -0.7094 0.0016 6 6 4.7366 -1.5768 0.0019 7 8 4.6030 -2.7829 0.0075 8 6 6.1167 -0.9716 0.0018 9 16 7.3573 -2.2949 0.0031 10 6 8.9259 -1.3838 0.0036 11 6 10.0739 -2.3601 0.0041 12 1 9.8794 -3.4224 0.0045 13 6 11.3726 -1.8970 0.0050 14 7 11.6095 -0.6034 0.0050 15 14 12.7957 -3.1071 0.0063 16 1 12.2658 -4.4944 0.0054 17 1 13.6271 -2.8947 -1.2057 18 1 13.6253 -2.8943 1.2194 19 6 2.2321 -1.1047 -0.0055 20 1 -0.3633 -0.0006 -1.0276 21 1 -0.3634 -0.8898 0.5143 22 1 -0.3633 0.8902 0.5134 23 1 1.8776 2.1371 -0.0004 24 1 4.3936 1.4179 0.0011 25 1 6.2432 -0.3553 -0.8883 26 1 6.2429 -0.3547 0.8916 27 1 8.9825 -0.7574 -0.8867 28 1 8.9814 -0.7566 0.8933 29 1 12.5232 -0.2776 0.0061 30 1 1.8751 -2.1240 -0.0110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583250058.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:53 Heat of formation + Delta-G solvation = -13.989577 kcal Electronic energy + Delta-G solvation = -13704.987186 eV Core-core repulsion = 11205.671887 eV Total energy + Delta-G solvation = -2499.315299 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.06744 -39.77732 -35.28671 -33.83231 -31.36487 -30.60397 -30.00905 -27.27408 -25.23589 -23.49329 -21.00924 -20.08058 -18.65380 -18.31206 -17.25333 -16.48871 -16.43129 -16.06330 -15.87492 -15.47462 -14.77549 -14.46080 -14.45276 -14.07104 -13.91189 -13.46288 -13.25352 -13.00674 -12.88369 -12.73632 -12.55409 -12.01626 -11.59107 -10.80874 -10.74389 -10.64476 -9.57993 -9.30464 -8.49558 -8.33023 -6.45679 0.37066 0.87193 1.40478 1.40681 1.46227 1.56202 1.99390 2.02252 2.26562 2.37970 3.01300 3.23732 3.99924 4.04498 4.16427 4.18121 4.33973 4.47375 4.49729 4.67402 4.75980 4.94281 4.95561 5.02749 5.15786 5.58145 5.74057 5.89979 6.05444 6.33298 6.61176 6.67184 7.21874 8.79488 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.073998 B = 0.004028 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.298783 B = 6949.711113 C = 7302.258247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.438 5.438 3 C -0.012 4.012 4 C -0.174 4.174 5 C -0.293 4.293 6 C 0.444 3.556 7 O -0.497 6.497 8 C -0.128 4.128 9 S -0.296 6.296 10 C 0.088 3.912 11 C -0.538 4.538 12 H 0.058 0.942 13 C 0.016 3.984 14 N -0.923 5.923 15 Si 0.978 3.022 16 H -0.268 1.268 17 H -0.270 1.270 18 H -0.270 1.270 19 C 0.077 3.923 20 H 0.090 0.910 21 H 0.097 0.903 22 H 0.110 0.890 23 H 0.204 0.796 24 H 0.155 0.845 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.271 0.729 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.501 6.706 0.035 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.112 5.112 3 C -0.138 4.138 4 C -0.197 4.197 5 C -0.303 4.303 6 C 0.325 3.675 7 O -0.376 6.376 8 C -0.277 4.277 9 S -0.069 6.069 10 C -0.059 4.059 11 C -0.576 4.576 12 H 0.076 0.924 13 C -0.185 4.185 14 N -0.562 5.562 15 Si 0.801 3.199 16 H -0.193 1.193 17 H -0.195 1.195 18 H -0.195 1.195 19 C -0.061 4.061 20 H 0.108 0.892 21 H 0.116 0.884 22 H 0.128 0.872 23 H 0.221 0.779 24 H 0.173 0.827 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -23.987 5.192 0.041 24.543 hybrid contribution 1.315 0.960 -0.019 1.628 sum -22.672 6.151 0.022 23.492 Atomic orbital electron populations 1.22511 0.73893 1.06551 1.05109 1.43973 1.08615 1.05152 1.53415 1.22286 0.89867 0.92624 1.09023 1.22360 0.97847 0.92201 1.07243 1.21019 0.92539 0.95105 1.21641 1.21031 0.88743 0.87664 0.70102 1.90519 1.88909 1.18158 1.39973 1.23834 0.94953 1.01274 1.07611 1.87065 1.03172 1.18555 1.98120 1.20802 0.90208 0.96634 0.98254 1.21003 0.90692 0.92988 1.52961 0.92373 1.25901 1.01365 0.97531 0.93717 1.70055 1.21847 1.14258 1.50064 0.85210 0.77805 0.78530 0.78370 1.19259 1.19531 1.19518 1.22471 0.89639 0.92991 1.01030 0.89187 0.88403 0.87178 0.77873 0.82704 0.86314 0.86305 0.96298 0.96295 0.91981 0.79803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.28 11.03 127.77 1.41 1.69 16 2 N -0.44 -6.44 3.08 -546.74 -1.68 -8.12 16 3 C -0.01 -0.18 11.31 83.08 0.94 0.76 16 4 C -0.17 -3.77 10.70 23.65 0.25 -3.51 16 5 C -0.29 -8.16 6.29 -18.87 -0.12 -8.28 16 6 C 0.44 16.03 7.14 27.83 0.20 16.22 16 7 O -0.50 -21.29 16.44 -3.23 -0.05 -21.34 16 8 C -0.13 -4.82 5.98 71.24 0.43 -4.40 16 9 S -0.30 -14.70 20.79 -56.49 -1.17 -15.88 16 10 C 0.09 4.97 5.70 71.24 0.41 5.38 16 11 C -0.54 -32.38 9.13 25.60 0.23 -32.15 16 12 H 0.06 3.54 7.71 -2.91 -0.02 3.52 16 13 C 0.02 0.91 5.46 84.66 0.46 1.37 16 14 N -0.92 -55.33 13.29 21.45 0.28 -55.05 16 15 Si 0.98 45.19 29.54 68.60 2.03 47.22 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 19 C 0.08 1.67 11.19 84.28 0.94 2.62 16 20 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 21 H 0.10 0.28 8.13 -2.38 -0.02 0.26 16 22 H 0.11 0.06 8.13 -2.39 -0.02 0.04 16 23 H 0.20 1.44 8.06 -2.91 -0.02 1.41 16 24 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 25 H 0.12 4.06 8.14 -2.39 -0.02 4.04 16 26 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 27 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.18 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -76.73 285.53 5.67 -71.05 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: 1.12 Total: 2.42 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 5.15 Total: -20.30 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: -1.40 Total: -63.17 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: -14.70 SS G_CDS: -1.17 Total: -15.88 kcal Total: -76.73 5.67 -71.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583250058.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.065 kcal (2) G-P(sol) polarization free energy of solvation -76.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds