Wall clock time and date at job start Sun Mar 29 2020 22:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48506 * 109.47014 * 239.99730 * 3 2 1 5 5 H 1.48503 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47160 * 119.99993 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.52998 * 109.47042 * 269.35042 * 12 11 10 14 14 H 1.08998 * 109.47404 * 305.00197 * 13 12 11 15 15 O 1.42897 * 109.47248 * 65.00340 * 13 12 11 16 16 C 1.52998 * 109.47044 * 185.00276 * 13 12 11 17 17 F 1.39900 * 109.47445 * 60.00233 * 16 13 12 18 18 F 1.39899 * 109.47209 * 180.02562 * 16 13 12 19 19 F 1.39907 * 109.47328 * 299.99773 * 16 13 12 20 20 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 21 21 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 22 22 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 23 23 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 24 24 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 25 25 H 1.09001 * 109.47358 * 29.35236 * 12 11 10 26 26 H 1.09004 * 109.47314 * 149.35402 * 12 11 10 27 27 H 0.96696 * 114.00122 * 59.99605 * 15 13 12 28 28 H 1.09007 * 113.75652 * 270.36911 * 20 11 10 29 29 H 1.08993 * 113.76177 * 139.00817 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8549 -5.7312 -2.9675 14 1 0.3014 -6.4177 -2.3270 15 8 -0.0532 -4.8114 -3.5769 16 6 1.5842 -6.5236 -4.0543 17 9 2.4732 -7.4242 -3.4578 18 9 0.6515 -7.2283 -4.8229 19 9 2.2946 -5.6424 -4.8767 20 6 2.1611 -3.7399 -0.0455 21 1 -0.4850 0.8400 -0.0004 22 1 0.4835 -2.5465 0.7729 23 1 -0.3212 -2.8279 -1.5258 24 1 1.3294 -2.4995 -2.2139 25 1 2.3663 -4.2117 -2.7493 26 1 2.6199 -5.6522 -1.7349 27 1 0.3712 -4.1692 -4.1621 28 1 3.1447 -3.5475 -0.4741 29 1 2.2059 -4.2869 0.8962 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594716071.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:10 Heat of formation + Delta-G solvation = -174.956044 kcal Electronic energy + Delta-G solvation = -17657.235521 eV Core-core repulsion = 14166.330581 eV Total energy + Delta-G solvation = -3490.904940 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -50.17698 -47.69800 -47.65189 -39.09178 -36.95786 -32.79385 -31.19816 -28.13884 -25.49250 -25.00249 -23.08874 -21.53329 -18.88957 -18.64052 -18.40192 -18.21313 -16.63705 -15.84429 -15.59698 -14.78345 -14.50207 -14.38290 -14.23423 -14.09782 -13.98544 -13.81335 -13.75430 -13.52018 -12.79106 -11.99278 -11.95392 -11.53093 -11.22675 -11.01273 -10.80231 -10.48879 -10.34150 -9.72435 -9.26956 -9.07756 -8.49491 -8.03070 -6.08903 -4.14260 2.61782 3.27188 3.32957 3.34652 3.61215 3.72923 3.94423 4.36942 4.44757 4.76937 4.92242 5.11148 5.22173 5.54655 5.75745 6.00016 6.27461 6.38296 6.56247 6.66151 7.08026 7.14397 7.32791 7.67386 7.82416 7.95449 8.30961 8.87972 9.51071 11.00349 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.045158 B = 0.005638 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.893307 B = 4964.804256 C = 5017.756894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.037 3.963 10 C 0.020 3.980 11 N -0.482 5.482 12 C -0.014 4.014 13 C 0.085 3.915 14 H 0.145 0.855 15 O -0.522 6.522 16 C 0.417 3.583 17 F -0.182 7.182 18 F -0.180 7.180 19 F -0.185 7.185 20 C -0.002 4.002 21 H 0.263 0.737 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.083 0.917 27 H 0.382 0.618 28 H 0.056 0.944 29 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 -10.711 -7.145 13.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.075 0.925 9 C 0.018 3.982 10 C -0.108 4.108 11 N -0.205 5.205 12 C -0.143 4.143 13 C 0.023 3.977 14 H 0.162 0.838 15 O -0.327 6.327 16 C 0.362 3.638 17 F -0.163 7.163 18 F -0.161 7.161 19 F -0.167 7.167 20 C -0.130 4.130 21 H 0.073 0.927 22 H 0.078 0.922 23 H 0.092 0.908 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.230 0.770 28 H 0.074 0.926 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.916 -11.432 -6.629 13.353 hybrid contribution 1.721 1.496 -1.035 2.504 sum 3.636 -9.936 -7.664 13.065 Atomic orbital electron populations 1.69948 1.05958 1.26932 1.49334 1.25003 0.94817 0.99117 0.94607 0.86684 0.79652 0.83141 0.78664 1.20270 1.21215 1.20169 1.21034 0.92713 0.90350 1.51920 0.92523 1.20330 0.93705 0.90957 0.93177 1.24181 1.00556 0.85249 1.00853 1.68511 1.25607 1.18036 1.08358 1.23271 0.95391 0.99568 0.96111 1.23203 0.92595 0.92346 0.89569 0.83788 1.86730 1.34627 1.46311 1.65002 1.21962 0.78166 0.79353 0.84354 1.93174 1.70161 1.69605 1.83388 1.93191 1.65312 1.80024 1.77610 1.93170 1.79892 1.68621 1.75026 1.24127 0.95313 0.98055 0.95510 0.92745 0.92200 0.90782 0.92848 0.92647 0.89851 0.76962 0.92551 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.98 13.29 55.43 0.74 -24.24 15 2 C 0.07 1.82 5.46 -17.82 -0.10 1.73 15 3 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 15 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 15 7 C -0.52 -13.81 8.77 -34.44 -0.30 -14.11 15 8 H 0.06 1.47 7.81 -52.49 -0.41 1.06 15 9 C 0.04 0.90 3.60 -90.84 -0.33 0.58 15 10 C 0.02 0.43 6.71 -2.57 -0.02 0.42 15 11 N -0.48 -9.10 6.15 -238.04 -1.46 -10.57 15 12 C -0.01 -0.21 4.30 -3.82 -0.02 -0.22 15 13 C 0.09 1.14 3.22 -26.73 -0.09 1.06 15 14 H 0.14 1.87 8.14 -51.93 -0.42 1.45 15 15 O -0.52 -7.52 12.43 -35.23 -0.44 -7.96 15 16 C 0.42 5.25 2.85 37.16 0.11 5.36 15 17 F -0.18 -2.30 16.71 2.25 0.04 -2.27 15 18 F -0.18 -2.37 17.26 2.25 0.04 -2.33 15 19 F -0.19 -2.39 16.51 2.25 0.04 -2.35 15 20 C 0.00 -0.04 7.50 -2.76 -0.02 -0.06 15 21 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 22 H 0.06 1.60 8.14 -51.93 -0.42 1.17 15 23 H 0.07 1.72 8.14 -51.93 -0.42 1.29 15 24 H 0.05 1.16 7.43 -51.93 -0.39 0.77 15 25 H 0.06 0.85 7.18 -51.93 -0.37 0.48 15 26 H 0.08 1.16 7.60 -51.93 -0.39 0.77 15 27 H 0.38 4.52 8.69 45.56 0.40 4.92 15 28 H 0.06 1.09 7.88 -51.92 -0.41 0.68 15 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 LS Contribution 263.09 15.07 3.96 3.96 Total: -1.00 -27.98 263.09 -5.27 -33.25 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -2.40 Total: 2.12 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -0.76 Total: -5.25 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: -0.73 Total: -34.80 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.44 Total: -7.96 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.11 Total: -6.95 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.98 -5.27 -33.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594716071.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.704 kcal (2) G-P(sol) polarization free energy of solvation -27.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds