Wall clock time and date at job start Sun Mar 29 2020 22:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48506 * 109.47014 * 239.99730 * 3 2 1 5 5 H 1.48503 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47160 * 119.99993 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.52998 * 109.47042 * 269.35042 * 12 11 10 14 14 H 1.08998 * 109.47404 * 305.00197 * 13 12 11 15 15 O 1.42897 * 109.47248 * 65.00340 * 13 12 11 16 16 C 1.52998 * 109.47044 * 185.00276 * 13 12 11 17 17 F 1.39900 * 109.47445 * 60.00233 * 16 13 12 18 18 F 1.39899 * 109.47209 * 180.02562 * 16 13 12 19 19 F 1.39907 * 109.47328 * 299.99773 * 16 13 12 20 20 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 21 21 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 22 22 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 23 23 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 24 24 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 25 25 H 1.09001 * 109.47358 * 29.35236 * 12 11 10 26 26 H 1.09004 * 109.47314 * 149.35402 * 12 11 10 27 27 H 0.96696 * 114.00122 * 59.99605 * 15 13 12 28 28 H 1.09007 * 113.75652 * 270.36911 * 20 11 10 29 29 H 1.08993 * 113.76177 * 139.00817 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8549 -5.7312 -2.9675 14 1 0.3014 -6.4177 -2.3270 15 8 -0.0532 -4.8114 -3.5769 16 6 1.5842 -6.5236 -4.0543 17 9 2.4732 -7.4242 -3.4578 18 9 0.6515 -7.2283 -4.8229 19 9 2.2946 -5.6424 -4.8767 20 6 2.1611 -3.7399 -0.0455 21 1 -0.4850 0.8400 -0.0004 22 1 0.4835 -2.5465 0.7729 23 1 -0.3212 -2.8279 -1.5258 24 1 1.3294 -2.4995 -2.2139 25 1 2.3663 -4.2117 -2.7493 26 1 2.6199 -5.6522 -1.7349 27 1 0.3712 -4.1692 -4.1621 28 1 3.1447 -3.5475 -0.4741 29 1 2.2059 -4.2869 0.8962 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594716071.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:10 Heat of formation + Delta-G solvation = -196.239287 kcal Electronic energy + Delta-G solvation = -17658.158431 eV Core-core repulsion = 14166.330581 eV Total energy + Delta-G solvation = -3491.827851 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -51.19753 -48.71087 -48.67601 -40.63577 -38.19845 -34.72505 -32.57913 -29.66408 -27.13530 -26.68580 -24.52173 -22.82784 -20.52811 -19.66845 -19.60844 -19.29448 -18.52963 -17.10372 -16.88503 -16.50186 -15.90679 -15.64207 -15.50674 -15.36974 -15.11404 -14.85744 -14.82742 -14.80625 -14.09093 -13.84309 -13.47638 -13.19411 -12.84799 -12.54697 -12.47750 -12.18310 -11.85391 -11.30868 -11.07727 -10.90837 -10.49359 -9.64084 -8.13172 -6.24781 1.44529 1.45209 1.53009 1.56120 2.42982 2.54242 2.68685 2.90520 3.16812 3.36746 3.42341 3.70808 3.91750 4.26158 4.35049 4.53978 4.66039 4.72770 4.85831 4.98722 5.32808 5.46254 5.64775 5.87062 6.29072 6.30899 6.35308 6.84181 7.43919 8.95841 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.045158 B = 0.005638 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.893307 B = 4964.804256 C = 5017.756894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.035 3.965 11 N -0.480 5.480 12 C -0.014 4.014 13 C 0.091 3.909 14 H 0.151 0.849 15 O -0.537 6.537 16 C 0.428 3.572 17 F -0.179 7.179 18 F -0.181 7.181 19 F -0.186 7.186 20 C 0.013 3.987 21 H 0.262 0.738 22 H 0.024 0.976 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.391 0.609 28 H 0.067 0.933 29 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.272 -11.260 -7.742 14.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.572 4.572 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.093 4.093 11 N -0.202 5.202 12 C -0.143 4.143 13 C 0.029 3.971 14 H 0.168 0.832 15 O -0.344 6.344 16 C 0.373 3.627 17 F -0.161 7.161 18 F -0.163 7.163 19 F -0.167 7.167 20 C -0.115 4.115 21 H 0.071 0.929 22 H 0.042 0.958 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.121 0.879 27 H 0.242 0.758 28 H 0.085 0.915 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.222 -11.995 -7.234 14.373 hybrid contribution 1.323 1.614 -0.843 2.251 sum 4.545 -10.381 -8.076 13.916 Atomic orbital electron populations 1.70078 1.07459 1.27593 1.50730 1.25783 0.95543 1.02530 0.94443 0.85670 0.78375 0.78985 0.78966 1.19388 1.21259 1.19576 1.21402 0.93029 0.91546 1.51224 0.92250 1.20346 0.94224 0.92312 0.93658 1.23843 0.99139 0.87071 0.99291 1.68395 1.25971 1.16332 1.09495 1.23316 0.95983 0.99853 0.95169 1.23109 0.92102 0.92175 0.89709 0.83155 1.86712 1.35432 1.46850 1.65366 1.21652 0.77937 0.79145 0.83949 1.93185 1.70034 1.69509 1.83333 1.93193 1.65466 1.80025 1.77599 1.93176 1.79860 1.68651 1.75025 1.23987 0.95038 0.95859 0.96628 0.92894 0.95759 0.92915 0.92824 0.92399 0.87887 0.75829 0.91505 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.86 13.29 21.45 0.28 -52.58 15 2 C 0.02 0.90 5.46 84.66 0.46 1.36 15 3 Si 0.95 42.19 29.54 68.60 2.03 44.22 15 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 15 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 7 C -0.53 -28.21 8.77 25.60 0.22 -27.99 15 8 H 0.06 3.03 7.81 -2.91 -0.02 3.01 15 9 C 0.01 0.67 3.60 -10.89 -0.04 0.63 15 10 C 0.04 1.54 6.71 86.34 0.58 2.12 15 11 N -0.48 -17.42 6.15 -907.02 -5.58 -23.00 15 12 C -0.01 -0.39 4.30 86.30 0.37 -0.01 15 13 C 0.09 2.25 3.22 30.59 0.10 2.35 15 14 H 0.15 3.56 8.14 -2.39 -0.02 3.54 15 15 O -0.54 -14.72 12.43 -148.98 -1.85 -16.57 15 16 C 0.43 9.78 2.85 71.98 0.21 9.98 15 17 F -0.18 -4.05 16.71 44.97 0.75 -3.30 15 18 F -0.18 -4.39 17.26 44.97 0.78 -3.62 15 19 F -0.19 -4.34 16.51 44.97 0.74 -3.60 15 20 C 0.01 0.51 7.50 86.41 0.65 1.15 15 21 H 0.26 14.37 8.31 -92.71 -0.77 13.60 15 22 H 0.02 1.34 8.14 -2.39 -0.02 1.32 15 23 H 0.05 2.49 8.14 -2.39 -0.02 2.47 15 24 H 0.05 2.30 7.43 -2.39 -0.02 2.28 15 25 H 0.06 1.63 7.18 -2.39 -0.02 1.61 15 26 H 0.10 2.53 7.60 -2.39 -0.02 2.51 15 27 H 0.39 8.75 8.69 -74.06 -0.64 8.11 15 28 H 0.07 2.43 7.88 -2.38 -0.02 2.41 15 29 H 0.08 2.94 8.14 -2.39 -0.02 2.92 15 Total: -1.00 -58.84 263.09 0.23 -58.60 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.53 Total: 10.25 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 2.55 Total: -10.40 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -5.30 Total: -75.57 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -1.85 Total: -16.57 kcal Atomic # 9 Polarization: -12.78 SS G_CDS: 2.27 Total: -10.51 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -58.84 0.23 -58.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594716071.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.636 kcal (2) G-P(sol) polarization free energy of solvation -58.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds