Wall clock time and date at job start Sun Mar 29 2020 22:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33842 * 124.51653 * 2 1 4 4 C 1.37445 * 115.10978 * 179.97438 * 3 2 1 5 5 C 1.50697 * 123.35954 * 179.97438 * 4 3 2 6 6 C 1.36765 * 113.27576 * 0.25116 * 4 3 2 7 7 C 1.46463 * 125.45977 * 179.73308 * 6 4 3 8 8 O 1.21737 * 120.00104 * 7.77111 * 7 6 4 9 9 N 1.34781 * 119.99611 * 187.77219 * 7 6 4 10 10 C 1.46494 * 120.00204 * 5.24166 * 9 7 6 11 11 C 1.36889 * 119.99519 * 185.24468 * 9 7 6 12 12 H 1.08001 * 119.99833 * 338.13695 * 11 9 7 13 13 C 1.39002 * 119.99587 * 158.14385 * 11 9 7 14 14 N 1.31401 * 120.00140 * 342.54932 * 13 11 9 15 15 Si 1.86793 * 119.99912 * 162.55929 * 13 11 9 16 16 H 1.48501 * 109.47380 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47630 * 119.99494 * 15 13 11 18 18 H 1.48508 * 109.46940 * 239.99697 * 15 13 11 19 19 S 1.70609 * 124.51432 * 180.02562 * 2 1 3 20 20 H 1.08997 * 109.47292 * 89.99285 * 1 2 3 21 21 H 1.08995 * 109.47411 * 209.99506 * 1 2 3 22 22 H 1.08997 * 109.46879 * 329.99542 * 1 2 3 23 23 H 1.08009 * 122.44383 * 0.02943 * 3 2 1 24 24 H 1.09004 * 109.47384 * 90.02930 * 5 4 3 25 25 H 1.09000 * 109.47625 * 330.02768 * 5 4 3 26 26 H 1.09002 * 109.46932 * 210.02356 * 5 4 3 27 27 H 1.09007 * 109.47246 * 35.89524 * 10 9 7 28 28 H 1.09005 * 109.47205 * 155.89326 * 10 9 7 29 29 H 1.09000 * 109.47776 * 275.89615 * 10 9 7 30 30 H 0.97002 * 120.00008 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1028 0.0000 4 6 3.6214 0.8782 0.0006 5 6 4.6447 1.9845 0.0001 6 6 3.9492 -0.4496 -0.0045 7 6 5.3111 -0.9885 -0.0108 8 8 6.2620 -0.2416 0.1307 9 7 5.5115 -2.3114 -0.1732 10 6 4.3779 -3.1945 -0.4580 11 6 6.7745 -2.8297 -0.0721 12 1 7.6334 -2.1910 -0.2158 13 6 6.9512 -4.1781 0.2156 14 7 5.9607 -4.8772 0.7222 15 14 8.5970 -4.9963 -0.1179 16 1 9.5396 -3.9990 -0.6857 17 1 9.1494 -5.5330 1.1517 18 1 8.4105 -6.1073 -1.0855 19 16 2.4737 -1.4058 -0.0006 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3634 -0.8900 0.5137 22 1 -0.3633 0.8899 0.5139 23 1 1.8427 2.0967 0.0005 24 1 4.8915 2.2516 1.0277 25 1 4.2381 2.8554 -0.5140 26 1 5.5447 1.6467 -0.5136 27 1 3.6640 -2.6748 -1.0970 28 1 4.7342 -4.0910 -0.9655 29 1 3.8919 -3.4749 0.4765 30 1 6.0842 -5.8181 0.9233 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601024087.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:50 Heat of formation + Delta-G solvation = -1.598074 kcal Electronic energy + Delta-G solvation = -14949.761598 eV Core-core repulsion = 12450.983635 eV Total energy + Delta-G solvation = -2498.777963 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.77283 -37.35967 -34.71138 -32.21772 -31.71805 -27.99388 -27.30114 -26.21784 -24.28850 -21.50086 -20.59190 -17.41215 -17.20020 -16.91860 -15.32581 -14.76559 -14.41349 -14.17548 -13.77590 -13.56175 -12.82511 -12.73930 -12.50418 -12.32096 -11.98641 -11.84223 -11.43087 -11.29159 -11.14057 -11.09734 -10.85975 -10.43623 -10.36648 -9.86130 -9.09414 -8.45765 -7.97491 -7.96067 -7.60406 -6.47290 -3.92546 1.20190 2.16053 2.58291 2.96273 3.14631 3.20940 3.28310 4.05002 4.25509 4.81071 5.05215 5.13615 5.42532 5.62271 5.68549 5.75529 5.89123 6.02190 6.04773 6.18435 6.28656 6.54345 6.56934 6.64370 6.96145 7.00442 7.13654 7.45984 8.04016 8.37733 9.07441 9.27817 9.88598 10.57244 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.038500 B = 0.007712 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.092129 B = 3629.657472 C = 4287.585300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.261 4.261 3 C -0.144 4.144 4 C -0.065 4.065 5 C -0.090 4.090 6 C -0.224 4.224 7 C 0.506 3.494 8 O -0.577 6.577 9 N -0.432 5.432 10 C 0.093 3.907 11 C -0.301 4.301 12 H 0.106 0.894 13 C 0.030 3.970 14 N -0.870 5.870 15 Si 0.928 3.072 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.279 1.279 19 S 0.209 5.791 20 H 0.067 0.933 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.127 0.873 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.040 0.960 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.460 4.320 -2.276 10.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.379 4.379 3 C -0.175 4.175 4 C -0.080 4.080 5 C -0.149 4.149 6 C -0.345 4.345 7 C 0.295 3.705 8 O -0.464 6.464 9 N -0.149 5.149 10 C -0.053 4.053 11 C -0.429 4.429 12 H 0.123 0.877 13 C -0.174 4.174 14 N -0.508 5.508 15 Si 0.754 3.246 16 H -0.190 1.190 17 H -0.206 1.206 18 H -0.205 1.205 19 S 0.478 5.522 20 H 0.086 0.914 21 H 0.082 0.918 22 H 0.086 0.914 23 H 0.145 0.855 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.058 0.942 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.376 2.897 -2.144 10.045 hybrid contribution 0.708 0.955 0.002 1.189 sum -8.668 3.852 -2.142 9.724 Atomic orbital electron populations 1.20215 0.88671 1.02397 1.01998 1.24590 1.01279 1.00934 1.11108 1.19639 0.92342 0.98679 1.06868 1.19267 0.94267 0.93595 1.00824 1.20519 0.98056 0.94093 1.02193 1.24845 0.97434 0.96877 1.15300 1.16761 0.85936 0.83181 0.84597 1.90604 1.41677 1.57472 1.56631 1.43483 1.08024 1.04788 1.58612 1.21721 0.87842 0.95207 1.00520 1.19776 0.83913 0.93391 1.45827 0.87671 1.25400 0.99505 0.97029 0.95515 1.70023 1.32720 1.09352 1.38745 0.85833 0.81451 0.79046 0.78259 1.18984 1.20591 1.20451 1.83702 0.94159 1.05707 1.68585 0.91427 0.91787 0.91447 0.85544 0.91707 0.93041 0.89269 0.94247 0.89007 0.91944 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.31 36.01 0.37 -0.49 16 2 C -0.26 -4.09 6.28 -35.85 -0.23 -4.32 16 3 C -0.14 -2.39 9.82 -41.41 -0.41 -2.80 16 4 C -0.07 -1.27 5.91 -105.45 -0.62 -1.90 16 5 C -0.09 -1.63 9.47 36.00 0.34 -1.29 16 6 C -0.22 -4.88 6.19 -36.80 -0.23 -5.11 16 7 C 0.51 13.16 7.55 -12.95 -0.10 13.06 16 8 O -0.58 -16.36 14.04 5.16 0.07 -16.29 16 9 N -0.43 -11.37 3.01 -123.76 -0.37 -11.75 16 10 C 0.09 2.10 7.15 59.84 0.43 2.53 16 11 C -0.30 -8.36 9.29 -15.01 -0.14 -8.49 16 12 H 0.11 3.05 7.39 -52.49 -0.39 2.66 16 13 C 0.03 0.78 4.93 -17.45 -0.09 0.69 16 14 N -0.87 -22.70 10.97 55.50 0.61 -22.10 16 15 Si 0.93 20.22 29.59 -169.99 -5.03 15.19 16 16 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 S 0.21 3.71 17.85 -107.50 -1.92 1.80 16 20 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 1.85 6.20 -51.93 -0.32 1.52 16 27 H 0.04 0.80 5.09 -27.21 -0.14 0.66 16 28 H 0.09 2.15 6.64 -51.93 -0.34 1.80 16 29 H 0.06 1.43 7.32 -51.93 -0.38 1.05 16 30 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 263.38 15.07 3.97 3.97 Total: -1.00 -30.15 263.38 -6.58 -36.73 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -3.24 Total: 0.56 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -0.67 Total: -8.11 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.24 Total: -33.84 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.07 Total: -16.29 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -1.92 Total: 1.80 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.15 -6.58 -36.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601024087.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.128 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds