Wall clock time and date at job start Sun Mar 29 2020 22:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33842 * 124.51653 * 2 1 4 4 C 1.37445 * 115.10978 * 179.97438 * 3 2 1 5 5 C 1.50697 * 123.35954 * 179.97438 * 4 3 2 6 6 C 1.36765 * 113.27576 * 0.25116 * 4 3 2 7 7 C 1.46463 * 125.45977 * 179.73308 * 6 4 3 8 8 O 1.21737 * 120.00104 * 7.77111 * 7 6 4 9 9 N 1.34781 * 119.99611 * 187.77219 * 7 6 4 10 10 C 1.46494 * 120.00204 * 5.24166 * 9 7 6 11 11 C 1.36889 * 119.99519 * 185.24468 * 9 7 6 12 12 H 1.08001 * 119.99833 * 338.13695 * 11 9 7 13 13 C 1.39002 * 119.99587 * 158.14385 * 11 9 7 14 14 N 1.31401 * 120.00140 * 342.54932 * 13 11 9 15 15 Si 1.86793 * 119.99912 * 162.55929 * 13 11 9 16 16 H 1.48501 * 109.47380 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47630 * 119.99494 * 15 13 11 18 18 H 1.48508 * 109.46940 * 239.99697 * 15 13 11 19 19 S 1.70609 * 124.51432 * 180.02562 * 2 1 3 20 20 H 1.08997 * 109.47292 * 89.99285 * 1 2 3 21 21 H 1.08995 * 109.47411 * 209.99506 * 1 2 3 22 22 H 1.08997 * 109.46879 * 329.99542 * 1 2 3 23 23 H 1.08009 * 122.44383 * 0.02943 * 3 2 1 24 24 H 1.09004 * 109.47384 * 90.02930 * 5 4 3 25 25 H 1.09000 * 109.47625 * 330.02768 * 5 4 3 26 26 H 1.09002 * 109.46932 * 210.02356 * 5 4 3 27 27 H 1.09007 * 109.47246 * 35.89524 * 10 9 7 28 28 H 1.09005 * 109.47205 * 155.89326 * 10 9 7 29 29 H 1.09000 * 109.47776 * 275.89615 * 10 9 7 30 30 H 0.97002 * 120.00008 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1028 0.0000 4 6 3.6214 0.8782 0.0006 5 6 4.6447 1.9845 0.0001 6 6 3.9492 -0.4496 -0.0045 7 6 5.3111 -0.9885 -0.0108 8 8 6.2620 -0.2416 0.1307 9 7 5.5115 -2.3114 -0.1732 10 6 4.3779 -3.1945 -0.4580 11 6 6.7745 -2.8297 -0.0721 12 1 7.6334 -2.1910 -0.2158 13 6 6.9512 -4.1781 0.2156 14 7 5.9607 -4.8772 0.7222 15 14 8.5970 -4.9963 -0.1179 16 1 9.5396 -3.9990 -0.6857 17 1 9.1494 -5.5330 1.1517 18 1 8.4105 -6.1073 -1.0855 19 16 2.4737 -1.4058 -0.0006 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3634 -0.8900 0.5137 22 1 -0.3633 0.8899 0.5139 23 1 1.8427 2.0967 0.0005 24 1 4.8915 2.2516 1.0277 25 1 4.2381 2.8554 -0.5140 26 1 5.5447 1.6467 -0.5136 27 1 3.6640 -2.6748 -1.0970 28 1 4.7342 -4.0910 -0.9655 29 1 3.8919 -3.4749 0.4765 30 1 6.0842 -5.8181 0.9233 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601024087.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:49 Heat of formation + Delta-G solvation = -20.203179 kcal Electronic energy + Delta-G solvation = -14950.568376 eV Core-core repulsion = 12450.983635 eV Total energy + Delta-G solvation = -2499.584741 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.58948 -38.90201 -36.68596 -33.88261 -33.34045 -29.55950 -28.80096 -27.92747 -26.14708 -22.81755 -22.30161 -19.21245 -18.87718 -18.71305 -17.06327 -16.46665 -16.19628 -15.91764 -15.29931 -14.89912 -14.37162 -14.13609 -13.89394 -13.74146 -13.68662 -13.54051 -13.26866 -12.83258 -12.62214 -12.59883 -12.44060 -12.17742 -12.11223 -11.37415 -10.98480 -10.43932 -9.85391 -9.41856 -9.16041 -8.43660 -6.01452 -0.27510 0.69069 1.17755 1.35374 1.40863 1.55565 1.58355 2.24152 2.37389 2.97748 3.05876 3.93755 4.01285 4.32708 4.38823 4.43023 4.64907 4.75091 4.79332 4.80959 4.83442 5.06863 5.13230 5.20240 5.24517 5.39078 5.54821 5.69578 6.04008 6.39862 7.06516 7.31501 7.91512 8.60199 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.038500 B = 0.007712 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.092129 B = 3629.657472 C = 4287.585300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.226 4.226 3 C -0.159 4.159 4 C -0.052 4.052 5 C -0.090 4.090 6 C -0.289 4.289 7 C 0.497 3.503 8 O -0.619 6.619 9 N -0.452 5.452 10 C 0.106 3.894 11 C -0.347 4.347 12 H 0.076 0.924 13 C 0.001 3.999 14 N -0.888 5.888 15 Si 0.995 3.005 16 H -0.273 1.273 17 H -0.273 1.273 18 H -0.261 1.261 19 S 0.224 5.776 20 H 0.089 0.911 21 H 0.076 0.924 22 H 0.091 0.909 23 H 0.163 0.837 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.128 4.741 -2.494 13.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.346 4.346 3 C -0.188 4.188 4 C -0.067 4.067 5 C -0.149 4.149 6 C -0.409 4.409 7 C 0.289 3.711 8 O -0.508 6.508 9 N -0.169 5.169 10 C -0.038 4.038 11 C -0.475 4.475 12 H 0.094 0.906 13 C -0.202 4.202 14 N -0.525 5.525 15 Si 0.817 3.183 16 H -0.198 1.198 17 H -0.199 1.199 18 H -0.186 1.186 19 S 0.493 5.507 20 H 0.108 0.892 21 H 0.095 0.905 22 H 0.110 0.890 23 H 0.181 0.819 24 H 0.085 0.915 25 H 0.109 0.891 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.072 3.289 -2.364 12.733 hybrid contribution 1.338 0.981 0.094 1.662 sum -10.733 4.270 -2.269 11.772 Atomic orbital electron populations 1.20452 0.84994 1.04266 1.03942 1.25169 1.03433 0.99275 1.06685 1.19880 0.90709 1.00743 1.07517 1.19727 0.96146 0.92919 0.97933 1.20525 0.96829 0.95206 1.02324 1.24548 0.97035 0.98687 1.20629 1.17434 0.87552 0.82941 0.83220 1.90543 1.43800 1.58412 1.58082 1.43673 1.08366 1.05430 1.59407 1.21637 0.87245 0.94484 1.00475 1.19684 0.84223 0.94287 1.49259 0.90592 1.26163 1.03107 0.96609 0.94350 1.70069 1.34188 1.09862 1.38399 0.84875 0.76984 0.77959 0.78471 1.19792 1.19851 1.18573 1.83443 0.92429 1.06365 1.68470 0.89239 0.90524 0.89030 0.81915 0.91529 0.89114 0.92659 0.91777 0.90295 0.92511 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.31 71.24 0.73 -0.64 16 2 C -0.23 -6.20 6.28 24.69 0.16 -6.05 16 3 C -0.16 -4.67 9.82 21.08 0.21 -4.46 16 4 C -0.05 -1.95 5.91 -20.40 -0.12 -2.07 16 5 C -0.09 -3.23 9.47 71.23 0.67 -2.56 16 6 C -0.29 -12.74 6.19 24.07 0.15 -12.59 16 7 C 0.50 27.22 7.55 86.38 0.65 27.87 16 8 O -0.62 -37.45 14.04 -4.47 -0.06 -37.52 16 9 N -0.45 -24.96 3.01 -663.68 -2.00 -26.96 16 10 C 0.11 4.95 7.15 127.77 0.91 5.86 16 11 C -0.35 -20.35 9.29 84.09 0.78 -19.57 16 12 H 0.08 4.76 7.39 -2.91 -0.02 4.74 16 13 C 0.00 0.04 4.93 84.94 0.42 0.46 16 14 N -0.89 -46.99 10.97 21.67 0.24 -46.75 16 15 Si 0.99 42.29 29.59 68.60 2.03 44.32 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 19 S 0.22 7.59 17.85 -56.49 -1.01 6.58 16 20 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 24 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.05 2.37 6.20 -2.39 -0.01 2.36 16 27 H 0.06 2.60 5.09 -18.10 -0.09 2.51 16 28 H 0.08 3.80 6.64 -2.38 -0.02 3.78 16 29 H 0.06 2.65 7.32 -2.39 -0.02 2.63 16 30 H 0.28 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -69.26 263.38 4.83 -64.43 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.07 Total: 9.65 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 4.57 Total: -13.75 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: -1.76 Total: -73.71 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.06 Total: -37.52 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 7.59 SS G_CDS: -1.01 Total: 6.58 kcal Total: -69.26 4.83 -64.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601024087.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.224 kcal (2) G-P(sol) polarization free energy of solvation -69.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds