Wall clock time and date at job start Sun Mar 29 2020 22:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.75874 * 125.20037 * 2 1 4 4 C 1.75867 * 91.04420 * 180.02562 * 3 2 1 5 5 C 1.33361 * 109.70704 * 359.75267 * 4 3 2 6 6 C 1.33813 * 125.20126 * 180.02562 * 2 1 3 7 7 N 1.40713 * 122.62418 * 359.93462 * 6 2 1 8 8 C 1.34774 * 120.00504 * 186.61800 * 7 6 2 9 9 O 1.21317 * 119.99424 * 354.60377 * 8 7 6 10 10 C 1.50699 * 120.00417 * 174.32874 * 8 7 6 11 11 C 1.52996 * 109.47131 * 180.27394 * 10 8 7 12 12 C 1.50699 * 109.47131 * 179.97438 * 11 10 8 13 13 H 1.08003 * 120.00001 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00455 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99237 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00460 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47087 * 59.99696 * 16 14 12 18 18 H 1.48498 * 109.47225 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47121 * 299.99972 * 16 14 12 20 20 H 1.09003 * 109.46932 * 269.96035 * 1 2 3 21 21 H 1.09000 * 109.46875 * 29.95294 * 1 2 3 22 22 H 1.08992 * 109.47532 * 149.95676 * 1 2 3 23 23 H 1.07997 * 125.14174 * 179.97438 * 4 3 2 24 24 H 1.08004 * 122.54691 * 180.23879 * 5 4 3 25 25 H 0.97007 * 119.99799 * 6.62324 * 7 6 2 26 26 H 1.08998 * 109.47259 * 300.27943 * 10 8 7 27 27 H 1.09006 * 109.47065 * 60.27695 * 10 8 7 28 28 H 1.08998 * 109.47498 * 300.00403 * 11 10 8 29 29 H 1.09006 * 109.46900 * 60.00200 * 11 10 8 30 30 H 0.97004 * 119.99573 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5208 1.4371 0.0000 4 6 3.9761 0.4497 -0.0008 5 6 3.6434 -0.8417 0.0044 6 6 2.2784 -1.0934 -0.0005 7 7 1.7473 -2.3965 0.0003 8 6 2.5666 -3.4582 0.1342 9 8 3.7689 -3.2975 0.1558 10 6 1.9892 -4.8441 0.2636 11 6 3.1254 -5.8585 0.4083 12 6 2.5479 -7.2444 0.5382 13 1 1.4776 -7.3874 0.5190 14 6 3.3860 -8.3298 0.6816 15 7 4.6894 -8.1557 0.7044 16 14 2.6703 -10.0477 0.8419 17 1 1.8736 -10.3672 -0.3699 18 1 3.7730 -11.0323 0.9825 19 1 1.7951 -10.1095 2.0400 20 1 -0.3633 -0.0007 1.0277 21 1 -0.3633 0.8904 -0.5131 22 1 -0.3634 -0.8895 -0.5145 23 1 4.9864 0.8315 -0.0015 24 1 4.3800 -1.6315 0.0088 25 1 0.7913 -2.5307 -0.0957 26 1 1.3472 -4.8896 1.1432 27 1 1.4041 -5.0784 -0.6258 28 1 3.7674 -5.8130 -0.4714 29 1 3.7105 -5.6242 1.2976 30 1 5.2790 -8.9193 0.8057 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601826770.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:34 Heat of formation + Delta-G solvation = -33.174079 kcal Electronic energy + Delta-G solvation = -14258.376785 eV Core-core repulsion = 11758.229584 eV Total energy + Delta-G solvation = -2500.147201 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.50663 -38.68682 -35.58671 -34.97936 -32.95651 -32.58376 -28.26579 -26.89075 -24.22400 -23.61568 -21.70576 -20.14125 -18.92534 -17.99748 -17.75533 -16.77385 -16.67934 -16.36891 -15.31435 -15.11632 -14.77606 -14.23166 -14.21304 -14.06938 -13.44361 -13.24506 -13.15211 -12.77550 -12.59556 -12.52728 -11.92974 -11.89116 -11.57819 -11.53915 -11.30041 -10.56525 -10.55103 -9.45142 -8.75715 -8.17682 -6.31627 -0.02234 0.69435 0.96756 1.31368 1.43307 1.47430 1.55139 2.07167 2.22759 2.45293 3.15796 3.76924 3.95587 4.26706 4.38128 4.46333 4.52341 4.76458 4.81146 4.86351 5.05078 5.10534 5.19751 5.26054 5.49845 5.61995 5.69261 5.85051 6.17097 6.50797 6.86388 7.18713 7.38738 8.94756 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.060853 B = 0.004444 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.015508 B = 6299.499139 C = 6727.713285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.237 4.237 3 S 0.143 5.857 4 C -0.207 4.207 5 C -0.182 4.182 6 C 0.112 3.888 7 N -0.646 5.646 8 C 0.512 3.488 9 O -0.559 6.559 10 C -0.115 4.115 11 C 0.041 3.959 12 C -0.544 4.544 13 H 0.077 0.923 14 C -0.006 4.006 15 N -0.938 5.938 16 Si 0.973 3.027 17 H -0.262 1.262 18 H -0.289 1.289 19 H -0.262 1.262 20 H 0.084 0.916 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.184 0.816 24 H 0.150 0.850 25 H 0.426 0.574 26 H 0.110 0.890 27 H 0.111 0.889 28 H -0.015 1.015 29 H -0.016 1.016 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.151 18.231 -1.746 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.358 4.358 3 S 0.405 5.595 4 C -0.342 4.342 5 C -0.214 4.214 6 C 0.006 3.994 7 N -0.292 5.292 8 C 0.302 3.698 9 O -0.438 6.438 10 C -0.155 4.155 11 C 0.004 3.996 12 C -0.582 4.582 13 H 0.096 0.904 14 C -0.203 4.203 15 N -0.578 5.578 16 Si 0.797 3.203 17 H -0.187 1.187 18 H -0.215 1.215 19 H -0.187 1.187 20 H 0.103 0.897 21 H 0.105 0.895 22 H 0.100 0.900 23 H 0.201 0.799 24 H 0.167 0.833 25 H 0.266 0.734 26 H 0.128 0.872 27 H 0.129 0.871 28 H 0.003 0.997 29 H 0.002 0.998 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.430 19.742 -1.701 22.393 hybrid contribution 0.477 -2.560 0.060 2.605 sum -9.953 17.182 -1.641 19.925 Atomic orbital electron populations 1.20337 0.85195 1.04248 1.03695 1.24309 1.01612 0.94417 1.15457 1.83724 0.95031 1.06855 1.73939 1.25831 1.03709 0.95874 1.08796 1.20998 0.96573 0.98533 1.05252 1.16987 0.92422 0.85120 1.04843 1.43395 1.11754 1.02594 1.71482 1.21656 0.86548 0.87771 0.73837 1.90495 1.17447 1.85883 1.49934 1.21669 1.00418 0.88192 1.05222 1.18703 0.92996 0.93053 0.94897 1.21678 0.94053 0.92262 1.50185 0.90450 1.26118 0.95050 1.04435 0.94714 1.70173 1.04229 1.32312 1.51039 0.85382 0.77793 0.77682 0.79443 1.18688 1.21462 1.18698 0.89747 0.89528 0.89963 0.79918 0.83262 0.73424 0.87179 0.87107 0.99677 0.99763 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.08 71.24 0.72 -0.37 16 2 C -0.24 -5.31 6.52 24.68 0.16 -5.15 16 3 S 0.14 2.89 23.32 -56.49 -1.32 1.57 16 4 C -0.21 -5.27 11.22 66.72 0.75 -4.52 16 5 C -0.18 -6.01 9.10 21.30 0.19 -5.82 16 6 C 0.11 3.30 6.54 36.84 0.24 3.54 16 7 N -0.65 -18.58 5.42 -306.55 -1.66 -20.24 16 8 C 0.51 19.70 7.79 87.66 0.68 20.38 16 9 O -0.56 -26.76 12.70 -3.14 -0.04 -26.80 16 10 C -0.12 -4.46 5.64 29.85 0.17 -4.30 16 11 C 0.04 2.25 4.26 29.85 0.13 2.38 16 12 C -0.54 -30.45 9.11 25.60 0.23 -30.22 16 13 H 0.08 3.91 7.74 -2.91 -0.02 3.88 16 14 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 15 N -0.94 -59.13 13.29 21.45 0.28 -58.85 16 16 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 17 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 20 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 21 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 22 H 0.08 0.98 7.09 -2.39 -0.02 0.96 16 23 H 0.18 3.75 8.06 -2.91 -0.02 3.73 16 24 H 0.15 6.05 5.15 -6.15 -0.03 6.02 16 25 H 0.43 8.62 7.42 -92.70 -0.69 7.93 16 26 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 27 H 0.11 3.68 8.14 -2.38 -0.02 3.66 16 28 H -0.02 -0.94 8.10 -2.39 -0.02 -0.96 16 29 H -0.02 -1.00 8.10 -2.38 -0.02 -1.01 16 30 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -74.35 273.84 3.48 -70.87 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.45 Total: 11.52 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 3.74 Total: -23.94 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -1.38 Total: -79.09 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.04 Total: -26.80 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.32 Total: 1.57 kcal Total: -74.35 3.48 -70.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601826770.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.700 kcal (2) G-P(sol) polarization free energy of solvation -74.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds