Wall clock time and date at job start Sun Mar 29 2020 22:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33364 * 125.14848 * 2 1 4 4 C 1.38803 * 114.89155 * 179.73086 * 3 2 1 5 5 N 1.40718 * 122.62269 * 180.22140 * 4 3 2 6 6 C 1.34776 * 119.99763 * 25.16654 * 5 4 3 7 7 O 1.21315 * 120.00425 * 5.33273 * 6 5 4 8 8 C 1.50699 * 120.00269 * 185.33450 * 6 5 4 9 9 C 1.52994 * 109.47723 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47740 * 180.02562 * 9 8 6 11 11 H 1.08008 * 119.99620 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00285 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00158 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99753 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46972 * 90.00066 * 14 12 10 16 16 H 1.48503 * 109.46917 * 209.99686 * 14 12 10 17 17 H 1.48501 * 109.47329 * 329.99960 * 14 12 10 18 18 C 1.33811 * 114.75540 * 0.24437 * 4 3 2 19 19 S 1.75865 * 125.14280 * 180.10659 * 2 1 3 20 20 H 1.09001 * 109.46728 * 90.00077 * 1 2 3 21 21 H 1.09000 * 109.47562 * 210.00257 * 1 2 3 22 22 H 1.09002 * 109.46949 * 330.00854 * 1 2 3 23 23 H 1.08002 * 122.54953 * 359.97438 * 3 2 1 24 24 H 0.96991 * 120.00213 * 205.16070 * 5 4 3 25 25 H 1.09000 * 109.47193 * 300.00386 * 8 6 5 26 26 H 1.09005 * 109.46938 * 60.00076 * 8 6 5 27 27 H 1.09008 * 109.47187 * 300.00253 * 9 8 6 28 28 H 1.08997 * 109.46846 * 59.99898 * 9 8 6 29 29 H 0.96996 * 119.99685 * 180.02562 * 13 12 10 30 30 H 1.08001 * 125.20186 * 180.02562 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2748 1.0905 0.0000 4 6 3.6406 0.8433 0.0059 5 7 4.5981 1.8745 0.0114 6 6 4.2802 3.0866 0.5076 7 8 3.2029 3.2618 1.0371 8 6 5.2630 4.2243 0.4048 9 6 4.6595 5.4787 1.0395 10 6 5.6420 6.6167 0.9361 11 1 6.6014 6.4606 0.4651 12 6 5.3168 7.8566 1.4437 13 7 4.1489 8.0466 2.0177 14 14 6.5352 9.2669 1.3160 15 1 6.3093 10.0027 0.0461 16 1 6.3455 10.1902 2.4635 17 1 7.9191 8.7289 1.3371 18 6 3.9756 -0.4522 0.0055 19 16 2.5193 -1.4381 -0.0027 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8901 0.5137 23 1 1.8649 2.0897 -0.0004 24 1 5.4868 1.7130 -0.3419 25 1 6.1822 3.9588 0.9270 26 1 5.4846 4.4193 -0.6445 27 1 3.7404 5.7442 0.5169 28 1 4.4375 5.2841 2.0888 29 1 3.9200 8.9190 2.3744 30 1 4.9859 -0.8340 0.0100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601875827.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:35 Heat of formation + Delta-G solvation = -17.709267 kcal Electronic energy + Delta-G solvation = -14142.580450 eV Core-core repulsion = 11643.103854 eV Total energy + Delta-G solvation = -2499.476597 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.03497 -37.42123 -34.08252 -33.51513 -31.43724 -30.58062 -26.77017 -25.91832 -22.97608 -21.53117 -19.98949 -19.19183 -17.29425 -16.89618 -16.16908 -15.46574 -14.95047 -14.45246 -13.98234 -13.95243 -13.37263 -13.12907 -12.80251 -12.33862 -12.23769 -12.04337 -11.94527 -11.21998 -10.96113 -10.79753 -10.61776 -10.03735 -9.99139 -9.71617 -9.26614 -9.10272 -8.52523 -8.35696 -7.76741 -5.99359 -4.04124 1.00821 1.64044 1.95943 2.58070 3.31667 3.34856 3.37788 3.40147 3.52479 4.44916 4.77706 5.20532 5.24032 5.35879 5.37741 5.45988 5.63060 5.83196 6.03390 6.12679 6.14421 6.28251 6.29239 6.80706 6.85361 7.68464 7.70720 7.79781 8.02153 8.32984 8.57775 9.03776 9.59815 11.11591 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.059626 B = 0.004321 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.482448 B = 6477.799726 C = 6872.495482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.169 4.169 3 C -0.135 4.135 4 C 0.159 3.841 5 N -0.674 5.674 6 C 0.510 3.490 7 O -0.513 6.513 8 C -0.128 4.128 9 C 0.036 3.964 10 C -0.529 4.529 11 H 0.056 0.944 12 C 0.059 3.941 13 N -0.889 5.889 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.279 4.279 19 S 0.091 5.909 20 H 0.074 0.926 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.159 0.841 24 H 0.409 0.591 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.024 0.976 28 H 0.025 0.975 29 H 0.261 0.739 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.004 -18.016 -5.831 19.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.286 4.286 3 C -0.167 4.167 4 C 0.053 3.947 5 N -0.321 5.321 6 C 0.299 3.701 7 O -0.386 6.386 8 C -0.168 4.168 9 C -0.001 4.001 10 C -0.567 4.567 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.528 5.528 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.417 4.417 19 S 0.352 5.648 20 H 0.093 0.907 21 H 0.086 0.914 22 H 0.098 0.902 23 H 0.177 0.823 24 H 0.245 0.755 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.147 -19.198 -5.353 20.177 hybrid contribution 1.558 2.181 -0.198 2.688 sum -1.588 -17.017 -5.551 17.970 Atomic orbital electron populations 1.20342 0.87650 1.03304 1.02706 1.24346 1.00039 0.95227 1.08971 1.20245 0.91569 1.00979 1.03858 1.16851 0.89829 0.87519 1.00511 1.43903 1.14790 1.10521 1.62859 1.21860 0.89376 0.82850 0.75978 1.90661 1.24536 1.82527 1.40861 1.21911 0.97363 0.94230 1.03306 1.18921 0.96146 0.88469 0.96580 1.21197 1.01859 0.95012 1.38626 0.92541 1.25018 0.95312 0.98800 0.95180 1.69995 1.20913 1.23324 1.38547 0.86580 0.81454 0.82218 0.77633 1.20643 1.21192 1.19865 1.24926 1.02395 0.95026 1.19388 1.83915 0.95997 1.09185 1.75696 0.90738 0.91362 0.90185 0.82322 0.75533 0.89856 0.89743 0.95714 0.95693 0.92899 0.81925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.37 36.00 0.37 -0.44 16 2 C -0.17 -2.20 6.50 -36.01 -0.23 -2.43 16 3 C -0.14 -2.14 8.72 -41.08 -0.36 -2.50 16 4 C 0.16 2.39 6.36 -85.12 -0.54 1.84 16 5 N -0.67 -9.97 5.43 -10.83 -0.06 -10.03 16 6 C 0.51 9.70 7.70 -10.99 -0.08 9.62 16 7 O -0.51 -11.74 13.46 5.53 0.07 -11.66 16 8 C -0.13 -2.52 5.64 -27.89 -0.16 -2.68 16 9 C 0.04 0.96 4.26 -27.89 -0.12 0.84 16 10 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 11 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 14 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 18 C -0.28 -3.45 11.18 29.18 0.33 -3.13 16 19 S 0.09 1.04 23.32 -107.50 -2.51 -1.47 16 20 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.16 2.85 6.28 -52.49 -0.33 2.52 16 24 H 0.41 4.53 8.82 -40.82 -0.36 4.17 16 25 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 26 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.02 0.71 8.10 -51.92 -0.42 0.29 16 28 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 277.78 15.07 4.19 4.19 Total: -1.00 -32.99 277.78 -7.40 -40.39 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -3.61 Total: 0.96 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.21 Total: -12.39 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.68 Total: -36.47 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.51 Total: -1.47 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.99 -7.40 -40.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601875827.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.680 kcal (2) G-P(sol) polarization free energy of solvation -32.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds