Wall clock time and date at job start Sun Mar 29 2020 22:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33364 * 125.14848 * 2 1 4 4 C 1.38803 * 114.89155 * 179.73086 * 3 2 1 5 5 N 1.40718 * 122.62269 * 180.22140 * 4 3 2 6 6 C 1.34776 * 119.99763 * 25.16654 * 5 4 3 7 7 O 1.21315 * 120.00425 * 5.33273 * 6 5 4 8 8 C 1.50699 * 120.00269 * 185.33450 * 6 5 4 9 9 C 1.52994 * 109.47723 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47740 * 180.02562 * 9 8 6 11 11 H 1.08008 * 119.99620 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00285 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00158 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99753 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46972 * 90.00066 * 14 12 10 16 16 H 1.48503 * 109.46917 * 209.99686 * 14 12 10 17 17 H 1.48501 * 109.47329 * 329.99960 * 14 12 10 18 18 C 1.33811 * 114.75540 * 0.24437 * 4 3 2 19 19 S 1.75865 * 125.14280 * 180.10659 * 2 1 3 20 20 H 1.09001 * 109.46728 * 90.00077 * 1 2 3 21 21 H 1.09000 * 109.47562 * 210.00257 * 1 2 3 22 22 H 1.09002 * 109.46949 * 330.00854 * 1 2 3 23 23 H 1.08002 * 122.54953 * 359.97438 * 3 2 1 24 24 H 0.96991 * 120.00213 * 205.16070 * 5 4 3 25 25 H 1.09000 * 109.47193 * 300.00386 * 8 6 5 26 26 H 1.09005 * 109.46938 * 60.00076 * 8 6 5 27 27 H 1.09008 * 109.47187 * 300.00253 * 9 8 6 28 28 H 1.08997 * 109.46846 * 59.99898 * 9 8 6 29 29 H 0.96996 * 119.99685 * 180.02562 * 13 12 10 30 30 H 1.08001 * 125.20186 * 180.02562 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2748 1.0905 0.0000 4 6 3.6406 0.8433 0.0059 5 7 4.5981 1.8745 0.0114 6 6 4.2802 3.0866 0.5076 7 8 3.2029 3.2618 1.0371 8 6 5.2630 4.2243 0.4048 9 6 4.6595 5.4787 1.0395 10 6 5.6420 6.6167 0.9361 11 1 6.6014 6.4606 0.4651 12 6 5.3168 7.8566 1.4437 13 7 4.1489 8.0466 2.0177 14 14 6.5352 9.2669 1.3160 15 1 6.3093 10.0027 0.0461 16 1 6.3455 10.1902 2.4635 17 1 7.9191 8.7289 1.3371 18 6 3.9756 -0.4522 0.0055 19 16 2.5193 -1.4381 -0.0027 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8901 0.5137 23 1 1.8649 2.0897 -0.0004 24 1 5.4868 1.7130 -0.3419 25 1 6.1822 3.9588 0.9270 26 1 5.4846 4.4193 -0.6445 27 1 3.7404 5.7442 0.5169 28 1 4.4375 5.2841 2.0888 29 1 3.9200 8.9190 2.3744 30 1 4.9859 -0.8340 0.0100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601875827.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:35 Heat of formation + Delta-G solvation = -39.771240 kcal Electronic energy + Delta-G solvation = -14143.537129 eV Core-core repulsion = 11643.103854 eV Total energy + Delta-G solvation = -2500.433276 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.38250 -38.69285 -35.58242 -35.32379 -33.10837 -31.93646 -27.95824 -27.66045 -24.55557 -22.94824 -21.54822 -20.31740 -18.93806 -18.11592 -17.80091 -16.92508 -16.53029 -16.28542 -15.26990 -15.00107 -14.76177 -14.27871 -14.21807 -14.12703 -13.47229 -13.28355 -13.15819 -12.84199 -12.81332 -12.48423 -11.95297 -11.81469 -11.61846 -11.31136 -11.22739 -10.77268 -10.56720 -9.53959 -8.82177 -8.18524 -6.32593 -0.03073 0.66497 0.91706 1.28193 1.42755 1.45246 1.56176 2.04085 2.27944 2.45324 3.14973 3.72968 4.05421 4.27066 4.38663 4.47969 4.52110 4.55839 4.69929 4.87828 5.03748 5.09789 5.16573 5.26447 5.48715 5.60969 5.64946 5.84316 6.16250 6.48708 6.85579 7.20103 7.37919 8.94208 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.059626 B = 0.004321 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.482448 B = 6477.799726 C = 6872.495482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.174 4.174 3 C -0.173 4.173 4 C 0.123 3.877 5 N -0.652 5.652 6 C 0.512 3.488 7 O -0.564 6.564 8 C -0.115 4.115 9 C 0.041 3.959 10 C -0.543 4.543 11 H 0.077 0.923 12 C -0.006 4.006 13 N -0.938 5.938 14 Si 0.974 3.026 15 H -0.272 1.272 16 H -0.287 1.287 17 H -0.255 1.255 18 C -0.265 4.265 19 S 0.156 5.844 20 H 0.091 0.909 21 H 0.089 0.911 22 H 0.069 0.931 23 H 0.123 0.877 24 H 0.429 0.571 25 H 0.110 0.890 26 H 0.110 0.890 27 H -0.017 1.017 28 H -0.017 1.017 29 H 0.263 0.737 30 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.001 -19.949 -6.891 21.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.292 4.292 3 C -0.204 4.204 4 C 0.018 3.982 5 N -0.300 5.300 6 C 0.301 3.699 7 O -0.441 6.441 8 C -0.155 4.155 9 C 0.004 3.996 10 C -0.581 4.581 11 H 0.095 0.905 12 C -0.203 4.203 13 N -0.578 5.578 14 Si 0.797 3.203 15 H -0.197 1.197 16 H -0.213 1.213 17 H -0.178 1.178 18 C -0.404 4.404 19 S 0.418 5.582 20 H 0.109 0.891 21 H 0.108 0.892 22 H 0.088 0.912 23 H 0.141 0.859 24 H 0.268 0.732 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.002 0.998 28 H 0.002 0.998 29 H 0.071 0.929 30 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.102 -21.197 -6.451 22.184 hybrid contribution 0.859 2.611 0.118 2.752 sum -0.243 -18.585 -6.332 19.636 Atomic orbital electron populations 1.20463 0.85968 1.03873 1.03937 1.24750 1.01597 0.95750 1.07097 1.20142 0.92834 1.00349 1.07084 1.16961 0.89416 0.88338 1.03518 1.43448 1.15729 1.09216 1.61615 1.21633 0.88366 0.84061 0.75849 1.90658 1.26437 1.83542 1.43494 1.21660 0.97791 0.91659 1.04400 1.18704 0.94948 0.91831 0.94167 1.21709 1.02687 0.95505 1.38217 0.90450 1.26124 0.97312 1.02302 0.94610 1.70177 1.23498 1.24183 1.39932 0.85322 0.79265 0.78014 0.77650 1.19734 1.21259 1.17844 1.25366 1.04567 0.94172 1.16248 1.83718 0.94070 1.06741 1.73706 0.89094 0.89215 0.91201 0.85871 0.73219 0.87155 0.87213 0.99806 0.99810 0.92865 0.78884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 10.37 71.24 0.74 -0.88 16 2 C -0.17 -4.41 6.50 24.58 0.16 -4.25 16 3 C -0.17 -5.62 8.72 21.30 0.19 -5.43 16 4 C 0.12 3.60 6.36 36.84 0.23 3.83 16 5 N -0.65 -18.79 5.43 -306.55 -1.66 -20.46 16 6 C 0.51 19.96 7.70 87.66 0.67 20.64 16 7 O -0.56 -27.64 13.46 -3.14 -0.04 -27.68 16 8 C -0.12 -4.53 5.64 29.85 0.17 -4.36 16 9 C 0.04 2.28 4.26 29.85 0.13 2.40 16 10 C -0.54 -30.66 9.11 25.60 0.23 -30.43 16 11 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 12 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 13 N -0.94 -59.44 13.29 21.45 0.28 -59.15 16 14 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.25 -10.66 7.11 99.48 0.71 -9.96 16 18 C -0.27 -5.81 11.18 66.81 0.75 -5.06 16 19 S 0.16 3.07 23.32 -56.49 -1.32 1.76 16 20 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 23 H 0.12 4.86 6.28 -2.91 -0.02 4.84 16 24 H 0.43 8.51 8.82 -92.72 -0.82 7.69 16 25 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 26 H 0.11 3.75 8.14 -2.38 -0.02 3.73 16 27 H -0.02 -1.03 8.10 -2.38 -0.02 -1.05 16 28 H -0.02 -1.04 8.10 -2.39 -0.02 -1.05 16 29 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 30 H 0.19 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -75.79 277.78 3.35 -72.44 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.33 Total: 10.43 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 3.73 Total: -23.43 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -1.38 Total: -79.61 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.04 Total: -27.68 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.32 Total: 1.76 kcal Total: -75.79 3.35 -72.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601875827.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.668 kcal (2) G-P(sol) polarization free energy of solvation -75.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds