Wall clock time and date at job start Sun Mar 29 2020 22:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00006 * 2 1 4 4 H 1.48501 * 109.47177 * 269.99937 * 3 2 1 5 5 H 1.48498 * 109.47312 * 30.00526 * 3 2 1 6 6 H 1.48504 * 109.46910 * 150.00356 * 3 2 1 7 7 C 1.37874 * 119.99342 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99722 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00399 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.46915 * 179.97438 * 9 7 2 11 11 C 1.47018 * 110.99643 * 66.36721 * 10 9 7 12 12 C 1.53099 * 109.25222 * 182.38804 * 11 10 9 13 13 O 1.43010 * 109.26246 * 303.15319 * 12 11 10 14 14 C 1.43015 * 113.73980 * 58.66745 * 13 12 11 15 15 H 1.09000 * 109.50244 * 61.31526 * 14 13 12 16 16 C 1.53001 * 109.50334 * 181.39560 * 14 13 12 17 17 F 1.39903 * 109.47173 * 60.00327 * 16 14 13 18 18 F 1.39906 * 109.46967 * 180.02562 * 16 14 13 19 19 F 1.39892 * 109.47813 * 300.00137 * 16 14 13 20 20 C 1.47015 * 110.99622 * 189.99617 * 10 9 7 21 21 H 0.97008 * 119.99476 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47057 * 60.00273 * 9 7 2 23 23 H 1.09001 * 109.46697 * 299.99884 * 9 7 2 24 24 H 1.08998 * 109.50436 * 302.32254 * 11 10 9 25 25 H 1.08995 * 109.50686 * 62.41159 * 11 10 9 26 26 H 1.09002 * 109.50591 * 183.20928 * 12 11 10 27 27 H 1.09006 * 109.50796 * 63.08682 * 12 11 10 28 28 H 1.09003 * 109.50398 * 57.67606 * 20 10 9 29 29 H 1.08996 * 109.51222 * 297.54711 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0018 11 6 2.9670 -3.6592 1.2551 12 6 3.9885 -4.7976 1.1873 13 8 3.3076 -6.0274 0.9240 14 6 2.5562 -6.0203 -0.2928 15 1 3.2289 -5.8578 -1.1349 16 6 1.8430 -7.3635 -0.4605 17 9 0.9784 -7.5705 0.6197 18 9 1.1087 -7.3561 -1.6513 19 9 2.7900 -8.3923 -0.5036 20 6 1.5202 -4.8944 -0.2401 21 1 -0.4850 0.8402 0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6246 -2.5570 0.8897 24 1 3.4866 -2.7119 1.3986 25 1 2.2851 -3.8302 2.0880 26 1 4.5163 -4.8701 2.1383 27 1 4.7027 -4.5987 0.3883 28 1 0.9837 -4.8487 -1.1879 29 1 0.8153 -5.0860 0.5689 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610079841.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:21 Heat of formation + Delta-G solvation = -194.935556 kcal Electronic energy + Delta-G solvation = -17864.446976 eV Core-core repulsion = 14372.675659 eV Total energy + Delta-G solvation = -3491.771317 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -50.02976 -47.56369 -47.48748 -39.31265 -35.45747 -32.60964 -31.85124 -28.56142 -26.77014 -24.58739 -23.17164 -21.73991 -20.14764 -18.47498 -18.22860 -17.78583 -16.49111 -15.93227 -15.55630 -14.65552 -14.59648 -14.45053 -14.28341 -13.98631 -13.94108 -13.82034 -13.64788 -13.64059 -13.12500 -12.19603 -11.92275 -11.47532 -11.26346 -11.09391 -10.88931 -10.71004 -10.47142 -10.08838 -9.61230 -9.25586 -8.53779 -7.55741 -6.12790 -4.15519 2.57998 3.26279 3.32615 3.34936 3.42813 3.81824 4.08073 4.34865 4.59550 4.76045 4.92805 5.10005 5.23402 5.38833 5.55974 5.64987 5.73456 5.98157 6.23882 6.41325 6.92104 7.09479 7.15492 7.61441 7.84755 7.98041 8.33496 8.90810 9.49284 10.98104 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.045477 B = 0.006098 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.545232 B = 4590.918852 C = 4920.498946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.530 5.530 11 C 0.023 3.977 12 C 0.066 3.934 13 O -0.374 6.374 14 C 0.053 3.947 15 H 0.108 0.892 16 C 0.465 3.535 17 F -0.176 7.176 18 F -0.175 7.175 19 F -0.180 7.180 20 C 0.021 3.979 21 H 0.263 0.737 22 H 0.034 0.966 23 H -0.004 1.004 24 H 0.100 0.900 25 H 0.036 0.964 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.163 -11.839 0.212 12.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.255 5.255 11 C -0.106 4.106 12 C -0.010 4.010 13 O -0.294 6.294 14 C -0.007 4.007 15 H 0.125 0.875 16 C 0.411 3.589 17 F -0.158 7.158 18 F -0.157 7.157 19 F -0.161 7.161 20 C -0.108 4.108 21 H 0.073 0.927 22 H 0.052 0.948 23 H 0.014 0.986 24 H 0.118 0.882 25 H 0.054 0.946 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.323 -11.813 -0.045 12.957 hybrid contribution -0.384 0.814 0.445 1.004 sum 4.939 -10.999 0.400 12.063 Atomic orbital electron populations 1.69960 1.06114 1.27015 1.50445 1.24993 0.94888 0.99420 0.95199 0.86455 0.79630 0.82870 0.78195 1.20551 1.21257 1.19816 1.21084 0.93474 0.89683 1.50848 0.91751 1.19788 0.89922 0.86814 0.96613 1.62414 1.28255 1.01809 1.33045 1.22705 0.96695 0.99530 0.91647 1.22903 0.94100 0.82377 1.01634 1.87903 1.65640 1.37057 1.38755 1.23166 0.95532 0.90196 0.91800 0.87466 1.20228 0.77624 0.87243 0.73847 1.93190 1.71297 1.95741 1.55532 1.93198 1.78305 1.96788 1.47361 1.93180 1.64493 1.62313 1.96106 1.22649 0.94518 0.90586 1.03024 0.92746 0.94758 0.98619 0.88159 0.94607 0.88055 0.91893 0.89004 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.96 13.29 55.43 0.74 -25.23 15 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 15 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.27 -6.19 7.11 56.52 0.40 -5.78 15 7 C -0.51 -13.78 8.49 -34.44 -0.29 -14.07 15 8 H 0.06 1.69 7.14 -52.49 -0.37 1.32 15 9 C 0.19 4.84 4.72 -4.97 -0.02 4.82 15 10 N -0.53 -10.88 4.72 -235.75 -1.11 -11.99 15 11 C 0.02 0.41 5.46 -3.71 -0.02 0.39 15 12 C 0.07 0.96 7.01 37.21 0.26 1.22 15 13 O -0.37 -5.92 10.36 -35.23 -0.36 -6.29 15 14 C 0.05 0.81 2.78 -26.68 -0.07 0.73 15 15 H 0.11 1.49 8.14 -51.93 -0.42 1.07 15 16 C 0.47 6.71 2.85 37.16 0.11 6.82 15 17 F -0.18 -2.72 16.68 2.25 0.04 -2.69 15 18 F -0.18 -2.45 16.87 2.25 0.04 -2.41 15 19 F -0.18 -2.55 17.26 2.25 0.04 -2.51 15 20 C 0.02 0.38 4.68 -3.71 -0.02 0.36 15 21 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 22 H 0.03 0.92 8.04 -51.93 -0.42 0.50 15 23 H 0.00 -0.11 8.12 -51.93 -0.42 -0.53 15 24 H 0.10 1.90 6.82 -51.93 -0.35 1.54 15 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 26 H 0.10 1.21 8.14 -51.93 -0.42 0.78 15 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 15 28 H 0.09 1.57 7.85 -51.93 -0.41 1.16 15 29 H 0.05 0.86 7.71 -51.93 -0.40 0.46 15 LS Contribution 258.04 15.07 3.89 3.89 Total: -1.00 -28.67 258.04 -5.12 -33.79 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: -3.20 Total: -4.22 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -0.16 Total: 1.74 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.38 Total: -37.22 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.36 Total: -6.29 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 0.11 Total: -7.60 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.67 -5.12 -33.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610079841.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.149 kcal (2) G-P(sol) polarization free energy of solvation -28.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds