Wall clock time and date at job start Sun Mar 29 2020 22:24:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86791 * 120.00006 * 2 1
4 4 H 1.48501 * 109.47177 * 269.99937 * 3 2 1
5 5 H 1.48498 * 109.47312 * 30.00526 * 3 2 1
6 6 H 1.48504 * 109.46910 * 150.00356 * 3 2 1
7 7 C 1.37874 * 119.99342 * 180.02562 * 2 1 3
8 8 H 1.07996 * 119.99722 * 179.97438 * 7 2 1
9 9 C 1.50703 * 120.00399 * 359.97438 * 7 2 1
10 10 N 1.46905 * 109.46915 * 179.97438 * 9 7 2
11 11 C 1.47018 * 110.99643 * 66.36721 * 10 9 7
12 12 C 1.53099 * 109.25222 * 182.38804 * 11 10 9
13 13 O 1.43010 * 109.26246 * 303.15319 * 12 11 10
14 14 C 1.43015 * 113.73980 * 58.66745 * 13 12 11
15 15 H 1.09000 * 109.50244 * 61.31526 * 14 13 12
16 16 C 1.53001 * 109.50334 * 181.39560 * 14 13 12
17 17 F 1.39903 * 109.47173 * 60.00327 * 16 14 13
18 18 F 1.39906 * 109.46967 * 180.02562 * 16 14 13
19 19 F 1.39892 * 109.47813 * 300.00137 * 16 14 13
20 20 C 1.47015 * 110.99622 * 189.99617 * 10 9 7
21 21 H 0.97008 * 119.99476 * 359.97438 * 1 2 3
22 22 H 1.08996 * 109.47057 * 60.00273 * 9 7 2
23 23 H 1.09001 * 109.46697 * 299.99884 * 9 7 2
24 24 H 1.08998 * 109.50436 * 302.32254 * 11 10 9
25 25 H 1.08995 * 109.50686 * 62.41159 * 11 10 9
26 26 H 1.09002 * 109.50591 * 183.20928 * 12 11 10
27 27 H 1.09006 * 109.50796 * 63.08682 * 12 11 10
28 28 H 1.09003 * 109.50398 * 57.67606 * 20 10 9
29 29 H 1.08996 * 109.51222 * 297.54711 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4467 2.6526 0.7001
6 1 3.5468 1.4400 0.7000
7 6 2.0044 -1.1941 -0.0005
8 1 3.0844 -1.1942 -0.0010
9 6 1.2509 -2.4992 -0.0005
10 7 2.2055 -3.6158 -0.0018
11 6 2.9670 -3.6592 1.2551
12 6 3.9885 -4.7976 1.1873
13 8 3.3076 -6.0274 0.9240
14 6 2.5562 -6.0203 -0.2928
15 1 3.2289 -5.8578 -1.1349
16 6 1.8430 -7.3635 -0.4605
17 9 0.9784 -7.5705 0.6197
18 9 1.1087 -7.3561 -1.6513
19 9 2.7900 -8.3923 -0.5036
20 6 1.5202 -4.8944 -0.2401
21 1 -0.4850 0.8402 0.0004
22 1 0.6239 -2.5567 -0.8903
23 1 0.6246 -2.5570 0.8897
24 1 3.4866 -2.7119 1.3986
25 1 2.2851 -3.8302 2.0880
26 1 4.5163 -4.8701 2.1383
27 1 4.7027 -4.5987 0.3883
28 1 0.9837 -4.8487 -1.1879
29 1 0.8153 -5.0860 0.5689
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000610079841.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:24:21
Heat of formation + Delta-G solvation = -194.935556 kcal
Electronic energy + Delta-G solvation = -17864.446976 eV
Core-core repulsion = 14372.675659 eV
Total energy + Delta-G solvation = -3491.771317 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 239.087 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-50.02976 -47.56369 -47.48748 -39.31265 -35.45747 -32.60964 -31.85124 -28.56142
-26.77014 -24.58739 -23.17164 -21.73991 -20.14764 -18.47498 -18.22860 -17.78583
-16.49111 -15.93227 -15.55630 -14.65552 -14.59648 -14.45053 -14.28341 -13.98631
-13.94108 -13.82034 -13.64788 -13.64059 -13.12500 -12.19603 -11.92275 -11.47532
-11.26346 -11.09391 -10.88931 -10.71004 -10.47142 -10.08838 -9.61230 -9.25586
-8.53779 -7.55741 -6.12790 -4.15519 2.57998 3.26279 3.32615 3.34936
3.42813 3.81824 4.08073 4.34865 4.59550 4.76045 4.92805 5.10005
5.23402 5.38833 5.55974 5.64987 5.73456 5.98157 6.23882 6.41325
6.92104 7.09479 7.15492 7.61441 7.84755 7.98041 8.33496 8.90810
9.49284 10.98104
Molecular weight = 239.09amu
Principal moments of inertia in cm(-1)
A = 0.045477 B = 0.006098 C = 0.005689
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 615.545232 B = 4590.918852 C = 4920.498946
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.057 3.943
3 Si 0.901 3.099
4 H -0.279 1.279
5 H -0.287 1.287
6 H -0.273 1.273
7 C -0.512 4.512
8 H 0.064 0.936
9 C 0.193 3.807
10 N -0.530 5.530
11 C 0.023 3.977
12 C 0.066 3.934
13 O -0.374 6.374
14 C 0.053 3.947
15 H 0.108 0.892
16 C 0.465 3.535
17 F -0.176 7.176
18 F -0.175 7.175
19 F -0.180 7.180
20 C 0.021 3.979
21 H 0.263 0.737
22 H 0.034 0.966
23 H -0.004 1.004
24 H 0.100 0.900
25 H 0.036 0.964
26 H 0.101 0.899
27 H 0.063 0.937
28 H 0.092 0.908
29 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.163 -11.839 0.212 12.918
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.145 4.145
3 Si 0.728 3.272
4 H -0.206 1.206
5 H -0.213 1.213
6 H -0.198 1.198
7 C -0.551 4.551
8 H 0.082 0.918
9 C 0.069 3.931
10 N -0.255 5.255
11 C -0.106 4.106
12 C -0.010 4.010
13 O -0.294 6.294
14 C -0.007 4.007
15 H 0.125 0.875
16 C 0.411 3.589
17 F -0.158 7.158
18 F -0.157 7.157
19 F -0.161 7.161
20 C -0.108 4.108
21 H 0.073 0.927
22 H 0.052 0.948
23 H 0.014 0.986
24 H 0.118 0.882
25 H 0.054 0.946
26 H 0.119 0.881
27 H 0.081 0.919
28 H 0.110 0.890
29 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 5.323 -11.813 -0.045 12.957
hybrid contribution -0.384 0.814 0.445 1.004
sum 4.939 -10.999 0.400 12.063
Atomic orbital electron populations
1.69960 1.06114 1.27015 1.50445 1.24993 0.94888 0.99420 0.95199
0.86455 0.79630 0.82870 0.78195 1.20551 1.21257 1.19816 1.21084
0.93474 0.89683 1.50848 0.91751 1.19788 0.89922 0.86814 0.96613
1.62414 1.28255 1.01809 1.33045 1.22705 0.96695 0.99530 0.91647
1.22903 0.94100 0.82377 1.01634 1.87903 1.65640 1.37057 1.38755
1.23166 0.95532 0.90196 0.91800 0.87466 1.20228 0.77624 0.87243
0.73847 1.93190 1.71297 1.95741 1.55532 1.93198 1.78305 1.96788
1.47361 1.93180 1.64493 1.62313 1.96106 1.22649 0.94518 0.90586
1.03024 0.92746 0.94758 0.98619 0.88159 0.94607 0.88055 0.91893
0.89004 0.93519
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -25.96 13.29 55.43 0.74 -25.23 15
2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 15
3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 15
4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15
5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15
6 H -0.27 -6.19 7.11 56.52 0.40 -5.78 15
7 C -0.51 -13.78 8.49 -34.44 -0.29 -14.07 15
8 H 0.06 1.69 7.14 -52.49 -0.37 1.32 15
9 C 0.19 4.84 4.72 -4.97 -0.02 4.82 15
10 N -0.53 -10.88 4.72 -235.75 -1.11 -11.99 15
11 C 0.02 0.41 5.46 -3.71 -0.02 0.39 15
12 C 0.07 0.96 7.01 37.21 0.26 1.22 15
13 O -0.37 -5.92 10.36 -35.23 -0.36 -6.29 15
14 C 0.05 0.81 2.78 -26.68 -0.07 0.73 15
15 H 0.11 1.49 8.14 -51.93 -0.42 1.07 15
16 C 0.47 6.71 2.85 37.16 0.11 6.82 15
17 F -0.18 -2.72 16.68 2.25 0.04 -2.69 15
18 F -0.18 -2.45 16.87 2.25 0.04 -2.41 15
19 F -0.18 -2.55 17.26 2.25 0.04 -2.51 15
20 C 0.02 0.38 4.68 -3.71 -0.02 0.36 15
21 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15
22 H 0.03 0.92 8.04 -51.93 -0.42 0.50 15
23 H 0.00 -0.11 8.12 -51.93 -0.42 -0.53 15
24 H 0.10 1.90 6.82 -51.93 -0.35 1.54 15
25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15
26 H 0.10 1.21 8.14 -51.93 -0.42 0.78 15
27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 15
28 H 0.09 1.57 7.85 -51.93 -0.41 1.16 15
29 H 0.05 0.86 7.71 -51.93 -0.40 0.46 15
LS Contribution 258.04 15.07 3.89 3.89
Total: -1.00 -28.67 258.04 -5.12 -33.79
By element:
Atomic # 1 Polarization: -1.02 SS G_CDS: -3.20 Total: -4.22 kcal
Atomic # 6 Polarization: 1.90 SS G_CDS: -0.16 Total: 1.74 kcal
Atomic # 7 Polarization: -36.84 SS G_CDS: -0.38 Total: -37.22 kcal
Atomic # 8 Polarization: -5.92 SS G_CDS: -0.36 Total: -6.29 kcal
Atomic # 9 Polarization: -7.72 SS G_CDS: 0.11 Total: -7.60 kcal
Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal
Total LS contribution 3.89 Total: 3.89 kcal
Total: -28.67 -5.12 -33.79 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000610079841.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -161.149 kcal
(2) G-P(sol) polarization free energy of solvation -28.668 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.817 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.119 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.787 kcal
(6) G-S(sol) free energy of system = (1) + (5) -194.936 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds