Wall clock time and date at job start Sun Mar 29 2020 22:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00006 * 2 1 4 4 H 1.48501 * 109.47177 * 269.99937 * 3 2 1 5 5 H 1.48498 * 109.47312 * 30.00526 * 3 2 1 6 6 H 1.48504 * 109.46910 * 150.00356 * 3 2 1 7 7 C 1.37874 * 119.99342 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99722 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00399 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.46915 * 179.97438 * 9 7 2 11 11 C 1.47018 * 110.99643 * 66.36721 * 10 9 7 12 12 C 1.53099 * 109.25222 * 182.38804 * 11 10 9 13 13 O 1.43010 * 109.26246 * 303.15319 * 12 11 10 14 14 C 1.43015 * 113.73980 * 58.66745 * 13 12 11 15 15 H 1.09000 * 109.50244 * 61.31526 * 14 13 12 16 16 C 1.53001 * 109.50334 * 181.39560 * 14 13 12 17 17 F 1.39903 * 109.47173 * 60.00327 * 16 14 13 18 18 F 1.39906 * 109.46967 * 180.02562 * 16 14 13 19 19 F 1.39892 * 109.47813 * 300.00137 * 16 14 13 20 20 C 1.47015 * 110.99622 * 189.99617 * 10 9 7 21 21 H 0.97008 * 119.99476 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47057 * 60.00273 * 9 7 2 23 23 H 1.09001 * 109.46697 * 299.99884 * 9 7 2 24 24 H 1.08998 * 109.50436 * 302.32254 * 11 10 9 25 25 H 1.08995 * 109.50686 * 62.41159 * 11 10 9 26 26 H 1.09002 * 109.50591 * 183.20928 * 12 11 10 27 27 H 1.09006 * 109.50796 * 63.08682 * 12 11 10 28 28 H 1.09003 * 109.50398 * 57.67606 * 20 10 9 29 29 H 1.08996 * 109.51222 * 297.54711 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0018 11 6 2.9670 -3.6592 1.2551 12 6 3.9885 -4.7976 1.1873 13 8 3.3076 -6.0274 0.9240 14 6 2.5562 -6.0203 -0.2928 15 1 3.2289 -5.8578 -1.1349 16 6 1.8430 -7.3635 -0.4605 17 9 0.9784 -7.5705 0.6197 18 9 1.1087 -7.3561 -1.6513 19 9 2.7900 -8.3923 -0.5036 20 6 1.5202 -4.8944 -0.2401 21 1 -0.4850 0.8402 0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6246 -2.5570 0.8897 24 1 3.4866 -2.7119 1.3986 25 1 2.2851 -3.8302 2.0880 26 1 4.5163 -4.8701 2.1383 27 1 4.7027 -4.5987 0.3883 28 1 0.9837 -4.8487 -1.1879 29 1 0.8153 -5.0860 0.5689 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610079841.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:21 Heat of formation + Delta-G solvation = -214.697744 kcal Electronic energy + Delta-G solvation = -17865.303928 eV Core-core repulsion = 14372.675659 eV Total energy + Delta-G solvation = -3492.628269 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -51.19590 -48.71293 -48.66850 -40.67755 -37.05825 -34.61008 -33.16840 -30.25775 -28.34724 -26.17606 -24.61117 -23.37133 -21.59623 -19.65176 -19.43743 -19.05059 -18.49490 -17.28320 -16.94054 -16.44654 -16.06891 -15.76288 -15.49330 -15.37396 -15.21090 -15.09571 -14.83601 -14.81740 -14.74203 -14.09926 -13.46944 -13.12628 -12.77758 -12.70183 -12.57553 -12.42627 -12.08826 -11.66353 -11.43618 -10.82860 -10.62952 -9.27860 -8.22864 -6.33566 1.38727 1.43566 1.44450 1.55291 2.22081 2.38366 2.58108 2.88167 3.10544 3.24957 3.43427 3.62071 3.86221 4.05539 4.18225 4.35075 4.52137 4.55635 4.87226 4.90031 5.11898 5.14674 5.58812 5.74443 5.94969 6.10175 6.39988 6.80985 7.36559 8.88726 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.045477 B = 0.006098 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.545232 B = 4590.918852 C = 4920.498946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.524 4.524 8 H 0.070 0.930 9 C 0.206 3.794 10 N -0.533 5.533 11 C 0.020 3.980 12 C 0.074 3.926 13 O -0.380 6.380 14 C 0.060 3.940 15 H 0.128 0.872 16 C 0.473 3.527 17 F -0.183 7.183 18 F -0.172 7.172 19 F -0.174 7.174 20 C 0.021 3.979 21 H 0.265 0.735 22 H 0.009 0.991 23 H -0.035 1.035 24 H 0.091 0.909 25 H 0.023 0.977 26 H 0.135 0.865 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.027 -12.087 0.144 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.562 4.562 8 H 0.088 0.912 9 C 0.080 3.920 10 N -0.258 5.258 11 C -0.108 4.108 12 C -0.001 4.001 13 O -0.299 6.299 14 C 0.000 4.000 15 H 0.145 0.855 16 C 0.418 3.582 17 F -0.165 7.165 18 F -0.153 7.153 19 F -0.155 7.155 20 C -0.108 4.108 21 H 0.074 0.926 22 H 0.027 0.973 23 H -0.018 1.018 24 H 0.110 0.890 25 H 0.041 0.959 26 H 0.152 0.848 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.207 -12.089 -0.112 14.075 hybrid contribution -0.992 0.839 0.472 1.382 sum 6.215 -11.250 0.360 12.858 Atomic orbital electron populations 1.70095 1.07884 1.28039 1.51543 1.25930 0.95699 1.03321 0.94656 0.85338 0.78597 0.78001 0.78415 1.19944 1.21123 1.18402 1.21416 0.93859 0.90536 1.50392 0.91170 1.19440 0.90043 0.88557 0.93918 1.62304 1.27196 1.01803 1.34483 1.22789 0.96988 1.01019 0.90010 1.22999 0.92822 0.80262 1.04059 1.87913 1.65636 1.37405 1.38928 1.23127 0.94976 0.89416 0.92511 0.85453 1.20035 0.77458 0.86981 0.73750 1.93182 1.71560 1.95762 1.55968 1.93211 1.78235 1.96762 1.47105 1.93193 1.64286 1.61981 1.96078 1.22675 0.95239 0.90247 1.02682 0.92638 0.97252 1.01762 0.89048 0.95915 0.84764 0.90344 0.88806 0.94669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.19 13.29 21.45 0.28 -54.91 15 2 C 0.00 0.12 5.46 84.65 0.46 0.58 15 3 Si 0.97 42.67 29.54 68.60 2.03 44.69 15 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 15 5 H -0.29 -12.39 7.11 99.48 0.71 -11.69 15 6 H -0.26 -10.76 7.11 99.48 0.71 -10.06 15 7 C -0.52 -28.37 8.49 25.60 0.22 -28.15 15 8 H 0.07 3.64 7.14 -2.91 -0.02 3.62 15 9 C 0.21 10.66 4.72 85.56 0.40 11.06 15 10 N -0.53 -21.85 4.72 -899.77 -4.24 -26.10 15 11 C 0.02 0.72 5.46 86.31 0.47 1.19 15 12 C 0.07 1.95 7.01 72.02 0.50 2.46 15 13 O -0.38 -11.03 10.36 -148.98 -1.54 -12.58 15 14 C 0.06 1.70 2.78 30.63 0.09 1.78 15 15 H 0.13 3.17 8.14 -2.39 -0.02 3.15 15 16 C 0.47 12.78 2.85 71.98 0.21 12.98 15 17 F -0.18 -5.45 16.68 44.97 0.75 -4.70 15 18 F -0.17 -4.52 16.87 44.97 0.76 -3.77 15 19 F -0.17 -4.53 17.26 44.97 0.78 -3.75 15 20 C 0.02 0.72 4.68 86.31 0.40 1.12 15 21 H 0.26 14.72 8.31 -92.70 -0.77 13.95 15 22 H 0.01 0.52 8.04 -2.39 -0.02 0.50 15 23 H -0.04 -2.01 8.12 -2.39 -0.02 -2.03 15 24 H 0.09 3.39 6.82 -2.39 -0.02 3.37 15 25 H 0.02 0.86 8.14 -2.39 -0.02 0.84 15 26 H 0.13 2.69 8.14 -2.39 -0.02 2.67 15 27 H 0.08 1.88 8.14 -2.38 -0.02 1.86 15 28 H 0.09 3.21 7.85 -2.39 -0.02 3.19 15 29 H 0.04 1.31 7.71 -2.39 -0.02 1.29 15 Total: -1.00 -61.14 258.04 2.72 -58.42 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: 1.16 Total: -0.34 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 2.75 Total: 3.03 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -3.96 Total: -81.00 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -1.54 Total: -12.58 kcal Atomic # 9 Polarization: -14.50 SS G_CDS: 2.29 Total: -12.21 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -61.14 2.72 -58.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610079841.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.281 kcal (2) G-P(sol) polarization free energy of solvation -61.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds