Wall clock time and date at job start Sun Mar 29 2020 22:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.51350 * 2 1 4 4 C 1.53296 * 109.50981 * 120.15417 * 2 1 3 5 5 N 1.47230 * 108.40320 * 172.22844 * 4 2 1 6 6 C 1.36935 * 121.03247 * 129.45907 * 5 4 2 7 7 H 1.07999 * 119.99965 * 333.31332 * 6 5 4 8 8 C 1.38815 * 119.99997 * 153.30912 * 6 5 4 9 9 N 1.31614 * 120.00002 * 343.56857 * 8 6 5 10 10 Si 1.86801 * 119.99701 * 163.57118 * 8 6 5 11 11 H 1.48500 * 109.47378 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47041 * 120.00233 * 10 8 6 13 13 H 1.48504 * 109.47184 * 239.99864 * 10 8 6 14 14 C 1.47154 * 117.98571 * 309.48715 * 5 4 2 15 15 C 1.53294 * 108.41914 * 50.51930 * 14 5 4 16 16 H 1.08999 * 109.51411 * 67.60088 * 15 14 5 17 17 C 1.52991 * 109.51313 * 187.70629 * 15 14 5 18 18 F 1.39900 * 109.47547 * 59.99545 * 17 15 14 19 19 F 1.39900 * 109.47378 * 179.97438 * 17 15 14 20 20 F 1.39900 * 109.47321 * 299.99721 * 17 15 14 21 21 O 1.42961 * 109.22062 * 307.68056 * 15 14 5 22 22 H 1.09003 * 109.47398 * 180.09951 * 1 2 3 23 23 H 1.09002 * 109.47365 * 300.10308 * 1 2 3 24 24 H 1.09003 * 109.47320 * 60.10088 * 1 2 3 25 25 H 1.08997 * 109.68659 * 291.94584 * 4 2 1 26 26 H 1.08997 * 109.68243 * 52.46437 * 4 2 1 27 27 H 0.96999 * 119.99798 * 180.02562 * 9 8 6 28 28 H 1.09001 * 109.67882 * 290.77108 * 14 5 4 29 29 H 1.09005 * 109.68039 * 170.26316 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 6 2.0419 -0.7258 1.2494 5 7 3.5019 -0.8770 1.1336 6 6 4.3338 -0.4995 2.1537 7 1 4.0271 0.2737 2.8425 8 6 5.5713 -1.1106 2.3024 9 7 5.8206 -2.2493 1.6912 10 14 6.8826 -0.3169 3.3700 11 1 6.3561 0.9483 3.9422 12 1 7.2510 -1.2422 4.4716 13 1 8.0830 -0.0261 2.5455 14 6 4.0405 -1.4458 -0.1121 15 6 3.4312 -0.6849 -1.2951 16 1 3.8029 0.3397 -1.2994 17 6 3.8222 -1.3758 -2.6030 18 9 3.3427 -2.6901 -2.5977 19 9 3.2652 -0.6811 -3.6820 20 9 5.2158 -1.3884 -2.7253 21 8 2.0075 -0.6758 -1.1658 22 1 -0.3634 -1.0277 0.0018 23 1 -0.3634 0.5154 0.8891 24 1 -0.3634 0.5123 -0.8909 25 1 1.8030 -0.1410 2.1376 26 1 1.5752 -1.7082 1.3204 27 1 6.6852 -2.6765 1.7955 28 1 3.7755 -2.5010 -0.1785 29 1 5.1252 -1.3382 -0.1258 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610410381.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:17 Heat of formation + Delta-G solvation = -178.829235 kcal Electronic energy + Delta-G solvation = -18430.618452 eV Core-core repulsion = 14939.545558 eV Total energy + Delta-G solvation = -3491.072894 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.61354 -47.15542 -47.07113 -38.78034 -34.66192 -32.83171 -31.24353 -28.94078 -25.82410 -25.47466 -22.43890 -21.79585 -19.96413 -18.09344 -17.97788 -17.33968 -16.63031 -15.78268 -15.04550 -14.72778 -14.08588 -14.04512 -13.80701 -13.55091 -13.35537 -13.27364 -13.24886 -13.05232 -12.84977 -12.09543 -12.01029 -11.42060 -11.16563 -10.94817 -10.76067 -10.53324 -10.33701 -10.17531 -9.84891 -9.29973 -8.65469 -6.89814 -5.94704 -3.40200 3.02377 3.29935 3.37669 3.39821 3.78981 4.24950 4.43954 4.55955 4.98059 5.18676 5.24813 5.40183 5.56097 5.63816 5.77569 5.82162 5.95847 6.19243 6.29402 6.40917 6.67767 6.90076 7.26731 7.51533 7.64014 8.20363 8.97843 9.61187 10.17447 11.14072 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.023568 B = 0.010432 C = 0.007932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.788406 B = 2683.302598 C = 3529.103991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.074 3.926 3 H 0.058 0.942 4 C 0.114 3.886 5 N -0.590 5.590 6 C -0.262 4.262 7 H 0.073 0.927 8 C 0.005 3.995 9 N -0.900 5.900 10 Si 0.907 3.093 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.286 1.286 14 C 0.149 3.851 15 C 0.024 3.976 16 H 0.091 0.909 17 C 0.466 3.534 18 F -0.177 7.177 19 F -0.188 7.188 20 F -0.175 7.175 21 O -0.375 6.375 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.032 0.968 27 H 0.258 0.742 28 H 0.043 0.957 29 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.907 3.695 -5.694 8.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.015 3.985 3 H 0.076 0.924 4 C -0.012 4.012 5 N -0.313 5.313 6 C -0.391 4.391 7 H 0.091 0.909 8 C -0.194 4.194 9 N -0.543 5.543 10 Si 0.737 3.263 11 H -0.201 1.201 12 H -0.215 1.215 13 H -0.213 1.213 14 C 0.022 3.978 15 C -0.037 4.037 16 H 0.109 0.891 17 C 0.411 3.589 18 F -0.158 7.158 19 F -0.170 7.170 20 F -0.157 7.157 21 O -0.295 6.295 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.863 3.493 -5.797 8.955 hybrid contribution 0.979 0.284 0.415 1.101 sum -4.884 3.777 -5.382 8.191 Atomic orbital electron populations 1.21708 0.93316 1.02752 1.01915 1.22718 0.94145 0.95419 0.86199 0.92428 1.21699 0.86185 0.98050 0.95244 1.44019 0.99740 1.74227 1.13336 1.19229 0.97558 1.14924 1.07414 0.90946 1.25123 0.99894 0.95271 0.99135 1.70002 1.22988 1.15177 1.46129 0.86153 0.81650 0.78828 0.79710 1.20106 1.21468 1.21273 1.21436 1.00269 0.94379 0.81741 1.24073 0.85330 1.01457 0.92860 0.89150 1.20373 0.74574 0.77603 0.86350 1.93165 1.87979 1.37919 1.96771 1.93147 1.85374 1.79193 1.59288 1.93184 1.29684 1.96428 1.96392 1.87758 1.18253 1.78594 1.44904 0.91857 0.91021 0.92339 0.91419 0.95018 0.93196 0.93881 0.87566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.57 37.16 0.36 -1.54 15 2 C 0.07 1.30 3.40 -26.58 -0.09 1.21 15 3 H 0.06 1.00 8.14 -51.93 -0.42 0.57 15 4 C 0.11 2.33 6.03 -3.49 -0.02 2.31 15 5 N -0.59 -14.56 3.05 -171.76 -0.52 -15.08 15 6 C -0.26 -6.96 9.65 -15.06 -0.15 -7.11 15 7 H 0.07 1.86 7.88 -52.49 -0.41 1.45 15 8 C 0.01 0.14 4.95 -17.43 -0.09 0.05 15 9 N -0.90 -25.50 11.14 55.49 0.62 -24.88 15 10 Si 0.91 21.00 29.58 -169.99 -5.03 15.97 15 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 14 C 0.15 3.54 4.46 -3.53 -0.02 3.53 15 15 C 0.02 0.49 2.75 -26.58 -0.07 0.41 15 16 H 0.09 1.73 8.14 -51.93 -0.42 1.31 15 17 C 0.47 8.78 2.85 37.15 0.11 8.89 15 18 F -0.18 -3.47 16.63 2.25 0.04 -3.44 15 19 F -0.19 -3.34 17.26 2.25 0.04 -3.31 15 20 F -0.18 -3.30 16.96 2.25 0.04 -3.27 15 21 O -0.38 -7.36 9.92 -35.23 -0.35 -7.71 15 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.07 1.29 7.96 -51.93 -0.41 0.87 15 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 15 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 15 28 H 0.04 1.11 7.62 -51.93 -0.40 0.71 15 29 H 0.11 2.77 6.06 -51.93 -0.31 2.45 15 LS Contribution 256.23 15.07 3.86 3.86 Total: -1.00 -28.53 256.23 -4.49 -33.02 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -3.21 Total: -2.92 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 0.03 Total: 7.75 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.09 Total: -39.96 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.35 Total: -7.71 kcal Atomic # 9 Polarization: -10.12 SS G_CDS: 0.11 Total: -10.01 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.53 -4.49 -33.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610410381.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.811 kcal (2) G-P(sol) polarization free energy of solvation -28.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds