Wall clock time and date at job start Sun Mar 29 2020 22:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.50858 * 2 1 4 4 C 1.53293 * 109.51758 * 239.84276 * 2 1 3 5 5 N 1.47145 * 108.38266 * 292.37885 * 4 2 1 6 6 C 1.36945 * 120.98021 * 129.44259 * 5 4 2 7 7 H 1.07999 * 119.99855 * 206.23089 * 6 5 4 8 8 C 1.38816 * 119.99929 * 26.23082 * 6 5 4 9 9 N 1.31612 * 120.00155 * 16.92240 * 8 6 5 10 10 Si 1.86798 * 119.99426 * 196.92645 * 8 6 5 11 11 H 1.48494 * 109.47825 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47064 * 120.00267 * 10 8 6 13 13 H 1.48503 * 109.47041 * 239.99547 * 10 8 6 14 14 C 1.47144 * 118.03847 * 309.46056 * 5 4 2 15 15 C 1.53292 * 108.38661 * 50.53425 * 14 5 4 16 16 H 1.09009 * 109.55017 * 67.65029 * 15 14 5 17 17 C 1.53003 * 109.51626 * 187.77573 * 15 14 5 18 18 F 1.39894 * 109.47116 * 179.75199 * 17 15 14 19 19 F 1.39903 * 109.46741 * 299.74629 * 17 15 14 20 20 F 1.39897 * 109.46791 * 59.74687 * 17 15 14 21 21 O 1.42958 * 109.22333 * 307.70211 * 15 14 5 22 22 H 1.08996 * 109.47149 * 299.89769 * 1 2 3 23 23 H 1.08999 * 109.47034 * 59.90368 * 1 2 3 24 24 H 1.09000 * 109.46369 * 179.90280 * 1 2 3 25 25 H 1.09008 * 109.67621 * 52.10356 * 4 2 1 26 26 H 1.08998 * 109.68586 * 172.64846 * 4 2 1 27 27 H 0.97004 * 119.99752 * 179.97438 * 9 8 6 28 28 H 1.09007 * 109.68362 * 290.81383 * 14 5 4 29 29 H 1.08997 * 109.68419 * 170.26262 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0421 -0.7259 -1.2493 5 7 1.6961 -2.1513 -1.1324 6 6 1.0610 -2.8084 -2.1523 7 1 0.4478 -3.6715 -1.9393 8 6 1.2054 -2.3651 -3.4598 9 7 2.1875 -1.5467 -3.7725 10 14 0.0055 -2.9301 -4.7753 11 1 -0.9993 -3.8410 -4.1706 12 1 -0.6825 -1.7498 -5.3576 13 1 0.7450 -3.6489 -5.8438 14 6 2.0522 -2.8496 0.1129 15 6 1.5398 -2.0203 1.2959 16 1 0.4497 -2.0277 1.3015 17 6 2.0615 -2.6188 2.6038 18 9 1.5980 -1.8580 3.6823 19 9 1.6031 -3.9345 2.7300 20 9 3.4605 -2.6111 2.5946 21 8 2.0076 -0.6757 1.1659 22 1 -0.3633 0.5122 0.8909 23 1 -0.3633 0.5153 -0.8891 24 1 -0.3632 -1.0277 -0.0017 25 1 1.5705 -0.3051 -2.1375 26 1 3.1242 -0.6153 -1.3205 27 1 2.2886 -1.2372 -4.6863 28 1 3.1354 -2.9530 0.1789 29 1 1.5874 -3.8354 0.1268 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610410384.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:21 Heat of formation + Delta-G solvation = -175.420872 kcal Electronic energy + Delta-G solvation = -18497.485959 eV Core-core repulsion = 15006.560862 eV Total energy + Delta-G solvation = -3490.925096 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.78691 -47.33274 -47.23780 -39.00107 -34.65422 -32.31169 -31.34721 -28.91227 -26.02566 -25.47769 -22.42086 -22.35907 -19.35349 -18.16556 -18.08969 -17.57125 -16.72590 -15.60261 -14.93825 -14.61399 -14.25576 -14.05540 -13.87186 -13.75032 -13.66196 -13.51886 -13.41560 -13.32419 -12.86524 -12.04391 -11.62045 -11.29516 -11.18855 -10.97498 -10.78085 -10.45025 -10.33711 -10.07142 -9.79940 -9.25268 -8.64344 -6.89049 -5.94455 -3.38983 2.89234 3.28567 3.37072 3.38941 3.75037 4.12804 4.37722 4.43842 4.91150 5.22306 5.25082 5.40775 5.44589 5.71939 5.79507 5.86266 6.11423 6.39817 6.45591 6.57168 6.72693 6.91965 7.36589 7.55510 7.65560 8.20932 8.99850 9.61492 10.17386 11.14056 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.036276 B = 0.008272 C = 0.007660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.668006 B = 3384.069405 C = 3654.510730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.063 3.937 3 H 0.099 0.901 4 C 0.143 3.857 5 N -0.586 5.586 6 C -0.259 4.259 7 H 0.072 0.928 8 C 0.006 3.994 9 N -0.900 5.900 10 Si 0.906 3.094 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.289 1.289 14 C 0.118 3.882 15 C 0.029 3.971 16 H 0.098 0.902 17 C 0.464 3.536 18 F -0.185 7.185 19 F -0.179 7.179 20 F -0.177 7.177 21 O -0.372 6.372 22 H 0.046 0.954 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.032 0.968 27 H 0.256 0.744 28 H 0.040 0.960 29 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.247 0.917 9.121 9.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 H 0.117 0.883 4 C 0.018 3.982 5 N -0.309 5.309 6 C -0.388 4.388 7 H 0.090 0.910 8 C -0.193 4.193 9 N -0.544 5.544 10 Si 0.736 3.264 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.215 1.215 14 C -0.010 4.010 15 C -0.032 4.032 16 H 0.116 0.884 17 C 0.409 3.591 18 F -0.166 7.166 19 F -0.161 7.161 20 F -0.158 7.158 21 O -0.291 6.291 22 H 0.065 0.935 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.119 0.881 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.078 1.047 9.080 9.373 hybrid contribution -0.580 -0.414 -0.681 0.985 sum -2.658 0.633 8.399 8.833 Atomic orbital electron populations 1.22255 0.96437 1.03062 1.01215 1.23138 0.93925 0.95851 0.86583 0.88294 1.21537 0.98173 0.83688 0.94812 1.44004 1.68431 1.05491 1.12935 1.19233 1.21739 1.12526 0.85271 0.91047 1.25047 0.97261 0.99890 0.97110 1.70035 1.29140 1.36711 1.18538 0.86168 0.80621 0.78070 0.81586 1.20117 1.21389 1.21547 1.21497 0.98506 0.94762 0.86188 1.23721 1.00433 0.87512 0.91554 0.88414 1.20431 0.75941 0.76033 0.86715 1.93159 1.88554 1.75822 1.59069 1.93167 1.88895 1.37589 1.96442 1.93171 1.29669 1.96227 1.96782 1.87844 1.72759 1.22616 1.45913 0.93458 0.91545 0.91338 0.88123 0.94966 0.93384 0.94193 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 8.81 37.16 0.33 -2.61 15 2 C 0.06 1.18 3.93 -26.58 -0.10 1.08 15 3 H 0.10 1.64 8.14 -51.93 -0.42 1.22 15 4 C 0.14 3.28 4.83 -3.54 -0.02 3.26 15 5 N -0.59 -14.05 2.56 -171.84 -0.44 -14.49 15 6 C -0.26 -6.74 9.65 -15.05 -0.15 -6.88 15 7 H 0.07 1.82 7.88 -52.49 -0.41 1.40 15 8 C 0.01 0.16 4.95 -17.43 -0.09 0.07 15 9 N -0.90 -25.01 11.14 55.49 0.62 -24.39 15 10 Si 0.91 20.75 29.59 -169.99 -5.03 15.72 15 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 12 H -0.29 -6.59 7.11 56.52 0.40 -6.18 15 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 14 C 0.12 2.44 5.77 -3.54 -0.02 2.42 15 15 C 0.03 0.54 2.37 -26.58 -0.06 0.47 15 16 H 0.10 1.69 6.26 -51.92 -0.32 1.37 15 17 C 0.46 7.75 2.85 37.16 0.11 7.86 15 18 F -0.18 -3.03 17.26 2.25 0.04 -2.99 15 19 F -0.18 -2.83 16.97 2.25 0.04 -2.80 15 20 F -0.18 -3.11 16.62 2.25 0.04 -3.08 15 21 O -0.37 -7.18 10.12 -35.23 -0.36 -7.54 15 22 H 0.05 0.71 8.14 -51.93 -0.42 0.28 15 23 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 24 H 0.07 1.26 6.11 -51.93 -0.32 0.94 15 25 H 0.10 2.50 6.14 -51.92 -0.32 2.18 15 26 H 0.03 0.80 8.14 -51.93 -0.42 0.37 15 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 15 28 H 0.04 0.87 7.61 -51.93 -0.40 0.47 15 29 H 0.07 1.47 7.86 -51.93 -0.41 1.06 15 LS Contribution 251.46 15.07 3.79 3.79 Total: -1.00 -27.57 251.46 -4.31 -31.88 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -3.00 Total: -1.79 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 0.00 Total: 5.67 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.18 Total: -38.88 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.36 Total: -7.54 kcal Atomic # 9 Polarization: -8.97 SS G_CDS: 0.11 Total: -8.86 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.57 -4.31 -31.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610410384.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.538 kcal (2) G-P(sol) polarization free energy of solvation -27.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds