Wall clock time and date at job start Sun Mar 29 2020 22:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.50858 * 2 1 4 4 C 1.53293 * 109.51758 * 239.84276 * 2 1 3 5 5 N 1.47145 * 108.38266 * 292.37885 * 4 2 1 6 6 C 1.36945 * 120.98021 * 129.44259 * 5 4 2 7 7 H 1.07999 * 119.99855 * 206.23089 * 6 5 4 8 8 C 1.38816 * 119.99929 * 26.23082 * 6 5 4 9 9 N 1.31612 * 120.00155 * 16.92240 * 8 6 5 10 10 Si 1.86798 * 119.99426 * 196.92645 * 8 6 5 11 11 H 1.48494 * 109.47825 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47064 * 120.00267 * 10 8 6 13 13 H 1.48503 * 109.47041 * 239.99547 * 10 8 6 14 14 C 1.47144 * 118.03847 * 309.46056 * 5 4 2 15 15 C 1.53292 * 108.38661 * 50.53425 * 14 5 4 16 16 H 1.09009 * 109.55017 * 67.65029 * 15 14 5 17 17 C 1.53003 * 109.51626 * 187.77573 * 15 14 5 18 18 F 1.39894 * 109.47116 * 179.75199 * 17 15 14 19 19 F 1.39903 * 109.46741 * 299.74629 * 17 15 14 20 20 F 1.39897 * 109.46791 * 59.74687 * 17 15 14 21 21 O 1.42958 * 109.22333 * 307.70211 * 15 14 5 22 22 H 1.08996 * 109.47149 * 299.89769 * 1 2 3 23 23 H 1.08999 * 109.47034 * 59.90368 * 1 2 3 24 24 H 1.09000 * 109.46369 * 179.90280 * 1 2 3 25 25 H 1.09008 * 109.67621 * 52.10356 * 4 2 1 26 26 H 1.08998 * 109.68586 * 172.64846 * 4 2 1 27 27 H 0.97004 * 119.99752 * 179.97438 * 9 8 6 28 28 H 1.09007 * 109.68362 * 290.81383 * 14 5 4 29 29 H 1.08997 * 109.68419 * 170.26262 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0421 -0.7259 -1.2493 5 7 1.6961 -2.1513 -1.1324 6 6 1.0610 -2.8084 -2.1523 7 1 0.4478 -3.6715 -1.9393 8 6 1.2054 -2.3651 -3.4598 9 7 2.1875 -1.5467 -3.7725 10 14 0.0055 -2.9301 -4.7753 11 1 -0.9993 -3.8410 -4.1706 12 1 -0.6825 -1.7498 -5.3576 13 1 0.7450 -3.6489 -5.8438 14 6 2.0522 -2.8496 0.1129 15 6 1.5398 -2.0203 1.2959 16 1 0.4497 -2.0277 1.3015 17 6 2.0615 -2.6188 2.6038 18 9 1.5980 -1.8580 3.6823 19 9 1.6031 -3.9345 2.7300 20 9 3.4605 -2.6111 2.5946 21 8 2.0076 -0.6757 1.1659 22 1 -0.3633 0.5122 0.8909 23 1 -0.3633 0.5153 -0.8891 24 1 -0.3632 -1.0277 -0.0017 25 1 1.5705 -0.3051 -2.1375 26 1 3.1242 -0.6153 -1.3205 27 1 2.2886 -1.2372 -4.6863 28 1 3.1354 -2.9530 0.1789 29 1 1.5874 -3.8354 0.1268 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610410384.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:21 Heat of formation + Delta-G solvation = -191.856150 kcal Electronic energy + Delta-G solvation = -18498.198646 eV Core-core repulsion = 15006.560862 eV Total energy + Delta-G solvation = -3491.637784 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -51.13254 -48.65112 -48.60281 -40.59050 -36.46654 -33.87951 -33.21343 -30.47909 -27.78684 -27.12409 -24.15794 -23.88236 -20.94380 -19.60599 -19.47595 -19.07580 -18.48723 -17.16216 -16.74442 -16.24531 -15.69423 -15.48124 -15.43636 -15.29605 -15.11441 -15.03757 -14.76297 -14.74409 -14.64016 -13.56107 -13.19951 -12.96904 -12.86255 -12.63741 -12.51939 -12.15019 -12.12804 -11.88001 -11.36419 -10.92840 -10.59942 -8.81607 -7.93683 -5.41340 1.47073 1.48317 1.50976 1.60110 2.31285 2.45201 2.79522 2.99443 3.23898 3.44195 3.60466 3.87393 3.95899 4.18296 4.31850 4.41227 4.50408 4.80773 4.97359 5.03759 5.11688 5.32285 5.52004 5.60420 5.99634 6.26528 7.02715 7.68197 8.22024 9.13339 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.036276 B = 0.008272 C = 0.007660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.668006 B = 3384.069405 C = 3654.510730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.070 3.930 3 H 0.124 0.876 4 C 0.149 3.851 5 N -0.601 5.601 6 C -0.266 4.266 7 H 0.076 0.924 8 C -0.043 4.043 9 N -0.934 5.934 10 Si 0.970 3.030 11 H -0.265 1.265 12 H -0.287 1.287 13 H -0.295 1.295 14 C 0.116 3.884 15 C 0.035 3.965 16 H 0.114 0.886 17 C 0.474 3.526 18 F -0.178 7.178 19 F -0.172 7.172 20 F -0.183 7.183 21 O -0.377 6.377 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.001 0.999 27 H 0.253 0.747 28 H 0.027 0.973 29 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.497 0.898 10.101 10.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.012 3.988 3 H 0.141 0.859 4 C 0.023 3.977 5 N -0.324 5.324 6 C -0.395 4.395 7 H 0.093 0.907 8 C -0.239 4.239 9 N -0.579 5.579 10 Si 0.798 3.202 11 H -0.189 1.189 12 H -0.214 1.214 13 H -0.222 1.222 14 C -0.011 4.011 15 C -0.026 4.026 16 H 0.131 0.869 17 C 0.419 3.581 18 F -0.159 7.159 19 F -0.153 7.153 20 F -0.164 7.164 21 O -0.297 6.297 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.019 0.981 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.335 1.019 10.095 10.680 hybrid contribution -0.144 -0.442 -0.950 1.057 sum -3.479 0.577 9.145 9.801 Atomic orbital electron populations 1.22171 0.94667 1.02561 1.02701 1.23081 0.95258 0.96181 0.84268 0.85882 1.21380 0.96183 0.83862 0.96241 1.44203 1.68501 1.06163 1.13583 1.19554 1.21465 1.12496 0.85982 0.90654 1.25774 0.98687 1.00422 0.99031 1.70182 1.30836 1.38244 1.18648 0.85179 0.78685 0.77572 0.78806 1.18895 1.21382 1.22203 1.21563 0.97910 0.95614 0.86014 1.23623 1.01214 0.86597 0.91170 0.86900 1.20090 0.75592 0.76250 0.86198 1.93174 1.88443 1.75742 1.58576 1.93189 1.88754 1.36985 1.96365 1.93168 1.30177 1.96273 1.96783 1.87846 1.73159 1.22989 1.45665 0.90669 0.91330 0.92766 0.90416 0.98058 0.93806 0.95516 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.18 8.81 71.98 0.63 -4.55 15 2 C 0.07 2.50 3.93 30.69 0.12 2.63 15 3 H 0.12 3.83 8.14 -2.38 -0.02 3.81 15 4 C 0.15 6.86 4.83 86.35 0.42 7.27 15 5 N -0.60 -28.79 2.56 -697.57 -1.79 -30.58 15 6 C -0.27 -13.76 9.65 84.03 0.81 -12.95 15 7 H 0.08 3.77 7.88 -2.91 -0.02 3.74 15 8 C -0.04 -2.29 4.95 84.86 0.42 -1.87 15 9 N -0.93 -52.80 11.14 21.65 0.24 -52.56 15 10 Si 0.97 42.61 29.59 68.60 2.03 44.64 15 11 H -0.26 -11.01 7.11 99.48 0.71 -10.30 15 12 H -0.29 -12.53 7.11 99.48 0.71 -11.82 15 13 H -0.29 -13.17 7.11 99.48 0.71 -12.46 15 14 C 0.12 4.71 5.77 86.35 0.50 5.20 15 15 C 0.04 1.22 2.37 30.69 0.07 1.29 15 16 H 0.11 3.61 6.26 -2.38 -0.01 3.60 15 17 C 0.47 14.80 2.85 71.98 0.21 15.01 15 18 F -0.18 -5.35 17.26 44.97 0.78 -4.57 15 19 F -0.17 -5.02 16.97 44.97 0.76 -4.26 15 20 F -0.18 -6.14 16.62 44.97 0.75 -5.39 15 21 O -0.38 -13.83 10.12 -148.98 -1.51 -15.33 15 22 H 0.07 1.97 8.14 -2.39 -0.02 1.95 15 23 H 0.07 2.13 8.14 -2.39 -0.02 2.12 15 24 H 0.05 1.87 6.11 -2.39 -0.01 1.86 15 25 H 0.08 3.93 6.14 -2.38 -0.01 3.92 15 26 H 0.00 0.07 8.14 -2.39 -0.02 0.05 15 27 H 0.25 13.82 8.31 -92.71 -0.77 13.05 15 28 H 0.03 1.16 7.61 -2.38 -0.02 1.14 15 29 H 0.08 3.19 7.86 -2.39 -0.02 3.18 15 Total: -1.00 -57.80 251.46 5.61 -52.19 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 1.17 Total: 3.82 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 3.18 Total: 12.03 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -1.55 Total: -83.14 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -1.51 Total: -15.33 kcal Atomic # 9 Polarization: -16.50 SS G_CDS: 2.29 Total: -14.22 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -57.80 5.61 -52.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610410384.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.661 kcal (2) G-P(sol) polarization free energy of solvation -57.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds