Wall clock time and date at job start Sun Mar 29 2020 22:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35952 * 116.99773 * 2 1 4 4 C 1.38793 * 120.02541 * 359.97438 * 3 2 1 5 5 C 1.38272 * 120.13285 * 179.97438 * 4 3 2 6 6 C 1.38109 * 120.17245 * 359.76327 * 5 4 3 7 7 C 1.39040 * 120.03696 * 0.50867 * 6 5 4 8 8 N 1.39593 * 120.06517 * 179.74145 * 7 6 5 9 9 C 1.34776 * 119.99857 * 325.29428 * 8 7 6 10 10 O 1.21761 * 120.00306 * 4.48169 * 9 8 7 11 11 C 1.46144 * 120.00188 * 184.48137 * 9 8 7 12 12 H 1.08001 * 119.99754 * 5.03931 * 11 9 8 13 13 C 1.40123 * 120.00166 * 185.04117 * 11 9 8 14 14 N 1.30637 * 119.99972 * 354.95812 * 13 11 9 15 15 Si 1.86806 * 120.00057 * 174.95472 * 13 11 9 16 16 H 1.48500 * 109.46701 * 94.99696 * 15 13 11 17 17 H 1.48496 * 109.46963 * 215.00020 * 15 13 11 18 18 H 1.48499 * 109.46661 * 334.99862 * 15 13 11 19 19 C 1.38690 * 120.01652 * 179.97438 * 3 2 1 20 20 F 1.35103 * 120.08551 * 359.96332 * 19 3 2 21 21 H 1.08999 * 109.47298 * 59.99588 * 1 2 3 22 22 H 1.09003 * 109.46989 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47220 * 299.99521 * 1 2 3 24 24 H 1.07999 * 119.93185 * 0.02562 * 4 3 2 25 25 H 1.07995 * 119.91093 * 180.02562 * 5 4 3 26 26 H 1.07996 * 119.98018 * 180.25821 * 6 5 4 27 27 H 0.96999 * 120.00244 * 145.57226 * 8 7 6 28 28 H 0.97003 * 119.99550 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2908 2.3757 -0.0005 5 6 1.9161 3.6089 0.0000 6 6 3.2950 3.6880 0.0060 7 6 4.0587 2.5262 0.0008 8 7 5.4524 2.6054 0.0015 9 6 6.0708 3.6047 -0.6585 10 8 5.4141 4.4837 -1.1863 11 6 7.5297 3.6333 -0.7405 12 1 8.1090 2.8128 -0.3436 13 6 8.1767 4.7253 -1.3341 14 7 7.4758 5.6704 -1.9016 15 14 10.0418 4.8297 -1.3137 16 1 10.5824 4.2740 -2.5803 17 1 10.4566 6.2492 -1.1790 18 1 10.5687 4.0489 -0.1657 19 6 3.4312 1.2844 0.0005 20 9 4.1691 0.1527 0.0018 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 0.2123 2.3183 -0.0005 25 1 1.3248 4.5126 0.0000 26 1 3.7801 4.6528 0.0106 27 1 5.9759 1.9390 0.4734 28 1 7.9238 6.4261 -2.3128 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689992130.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:51 Heat of formation + Delta-G solvation = -93.987932 kcal Electronic energy + Delta-G solvation = -16511.882544 eV Core-core repulsion = 13442.885080 eV Total energy + Delta-G solvation = -3068.997464 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.19987 -39.69322 -38.34053 -36.29919 -33.39616 -32.49209 -29.86044 -28.88435 -27.14534 -26.22059 -22.33609 -22.08579 -19.97621 -17.92818 -17.69978 -16.72923 -16.16294 -15.86292 -15.37922 -15.28563 -14.68688 -14.24164 -14.08384 -13.99960 -13.08710 -12.75355 -12.19999 -12.08612 -11.96016 -11.39373 -11.25586 -11.16673 -10.96707 -10.83819 -10.65537 -10.36526 -9.37254 -8.94546 -7.94966 -7.70421 -7.24602 -6.40446 -4.86813 1.63997 1.80569 3.05307 3.12886 3.16927 3.30131 3.96254 4.04409 4.40293 4.54252 4.75508 5.01822 5.16151 5.26213 5.40078 5.45055 5.55084 5.80234 5.82973 6.37155 6.42142 6.78218 6.89773 7.06466 7.25387 7.54890 7.64248 7.93026 8.08908 8.80241 9.11355 10.30089 10.50181 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.051835 B = 0.005883 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.046874 B = 4758.154846 C = 5198.407798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.315 6.315 3 C 0.108 3.892 4 C -0.228 4.228 5 C -0.073 4.073 6 C -0.140 4.140 7 C 0.199 3.801 8 N -0.692 5.692 9 C 0.543 3.457 10 O -0.557 6.557 11 C -0.535 4.535 12 H 0.074 0.926 13 C 0.086 3.914 14 N -0.757 5.757 15 Si 0.915 3.085 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.262 1.262 19 C 0.007 3.993 20 F -0.139 7.139 21 H 0.054 0.946 22 H 0.096 0.904 23 H 0.054 0.946 24 H 0.127 0.873 25 H 0.126 0.874 26 H 0.155 0.845 27 H 0.398 0.602 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.542 -6.108 4.402 12.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.229 6.229 3 C 0.062 3.938 4 C -0.248 4.248 5 C -0.092 4.092 6 C -0.161 4.161 7 C 0.098 3.902 8 N -0.334 5.334 9 C 0.351 3.649 10 O -0.439 6.439 11 C -0.571 4.571 12 H 0.092 0.908 13 C -0.135 4.135 14 N -0.385 5.385 15 Si 0.739 3.261 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.186 1.186 19 C -0.017 4.017 20 F -0.118 7.118 21 H 0.073 0.927 22 H 0.114 0.886 23 H 0.073 0.927 24 H 0.145 0.855 25 H 0.144 0.856 26 H 0.172 0.828 27 H 0.232 0.768 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.769 -5.488 3.881 11.858 hybrid contribution 0.971 -0.425 0.148 1.070 sum -8.799 -5.913 4.029 11.341 Atomic orbital electron populations 1.23006 0.78690 1.03480 1.01319 1.86080 1.21101 1.26462 1.89241 1.18614 0.90136 0.85115 0.99917 1.20871 0.99343 0.91597 1.12960 1.20853 0.94353 0.96661 0.97318 1.21403 0.92767 0.99059 1.02846 1.17775 0.86198 0.90823 0.95445 1.44146 1.01810 1.32652 1.54837 1.18430 0.89077 0.79614 0.77822 1.90617 1.66399 1.37565 1.49361 1.20841 0.89129 1.06408 1.40682 0.90765 1.25754 1.00340 0.94573 0.92850 1.69986 1.36905 1.07280 1.24359 0.86232 0.82214 0.78249 0.79445 1.19605 1.20181 1.18628 1.16761 0.86026 0.81928 1.16985 1.91410 1.76586 1.48749 1.95019 0.92704 0.88566 0.92744 0.85496 0.85578 0.82774 0.76841 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 15 2 O -0.32 -4.99 10.36 -19.59 -0.20 -5.20 15 3 C 0.11 1.91 6.69 -39.21 -0.26 1.65 15 4 C -0.23 -3.51 9.04 -39.36 -0.36 -3.87 15 5 C -0.07 -1.22 10.03 -39.62 -0.40 -1.61 15 6 C -0.14 -2.91 8.69 -39.33 -0.34 -3.25 15 7 C 0.20 4.34 6.31 -83.70 -0.53 3.81 15 8 N -0.69 -16.14 5.21 -11.16 -0.06 -16.20 15 9 C 0.54 15.06 7.58 -13.09 -0.10 14.96 15 10 O -0.56 -17.03 12.44 5.13 0.06 -16.97 15 11 C -0.53 -14.60 9.53 -35.70 -0.34 -14.94 15 12 H 0.07 1.85 7.85 -52.49 -0.41 1.44 15 13 C 0.09 2.31 5.50 -17.35 -0.10 2.21 15 14 N -0.76 -21.66 11.84 55.55 0.66 -21.00 15 15 Si 0.91 19.38 29.56 -169.99 -5.03 14.35 15 16 H -0.27 -5.65 7.11 56.52 0.40 -5.24 15 17 H -0.28 -5.73 7.11 56.52 0.40 -5.32 15 18 H -0.26 -5.39 7.11 56.52 0.40 -4.98 15 19 C 0.01 0.13 7.32 -39.08 -0.29 -0.15 15 20 F -0.14 -2.83 16.79 2.25 0.04 -2.80 15 21 H 0.05 0.51 7.66 -51.93 -0.40 0.11 15 22 H 0.10 0.75 8.14 -51.93 -0.42 0.32 15 23 H 0.05 0.48 7.66 -51.93 -0.40 0.08 15 24 H 0.13 1.51 6.29 -52.49 -0.33 1.18 15 25 H 0.13 1.72 8.06 -52.49 -0.42 1.30 15 26 H 0.15 3.59 6.19 -52.49 -0.32 3.27 15 27 H 0.40 8.27 8.62 -40.82 -0.35 7.92 15 28 H 0.27 7.04 8.29 -40.82 -0.34 6.70 15 LS Contribution 256.78 15.07 3.87 3.87 Total: -1.00 -32.50 256.78 -4.57 -37.07 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -2.19 Total: 6.76 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.71 Total: 0.11 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.60 Total: -37.20 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.14 Total: -22.16 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.50 -4.57 -37.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689992130.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.922 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds