Wall clock time and date at job start Sun Mar 29 2020 22:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35952 * 116.99773 * 2 1 4 4 C 1.38793 * 120.02541 * 359.97438 * 3 2 1 5 5 C 1.38272 * 120.13285 * 179.97438 * 4 3 2 6 6 C 1.38109 * 120.17245 * 359.76327 * 5 4 3 7 7 C 1.39040 * 120.03696 * 0.50867 * 6 5 4 8 8 N 1.39593 * 120.06517 * 179.74145 * 7 6 5 9 9 C 1.34776 * 119.99857 * 325.29428 * 8 7 6 10 10 O 1.21761 * 120.00306 * 4.48169 * 9 8 7 11 11 C 1.46144 * 120.00188 * 184.48137 * 9 8 7 12 12 H 1.08001 * 119.99754 * 5.03931 * 11 9 8 13 13 C 1.40123 * 120.00166 * 185.04117 * 11 9 8 14 14 N 1.30637 * 119.99972 * 354.95812 * 13 11 9 15 15 Si 1.86806 * 120.00057 * 174.95472 * 13 11 9 16 16 H 1.48500 * 109.46701 * 94.99696 * 15 13 11 17 17 H 1.48496 * 109.46963 * 215.00020 * 15 13 11 18 18 H 1.48499 * 109.46661 * 334.99862 * 15 13 11 19 19 C 1.38690 * 120.01652 * 179.97438 * 3 2 1 20 20 F 1.35103 * 120.08551 * 359.96332 * 19 3 2 21 21 H 1.08999 * 109.47298 * 59.99588 * 1 2 3 22 22 H 1.09003 * 109.46989 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47220 * 299.99521 * 1 2 3 24 24 H 1.07999 * 119.93185 * 0.02562 * 4 3 2 25 25 H 1.07995 * 119.91093 * 180.02562 * 5 4 3 26 26 H 1.07996 * 119.98018 * 180.25821 * 6 5 4 27 27 H 0.96999 * 120.00244 * 145.57226 * 8 7 6 28 28 H 0.97003 * 119.99550 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2908 2.3757 -0.0005 5 6 1.9161 3.6089 0.0000 6 6 3.2950 3.6880 0.0060 7 6 4.0587 2.5262 0.0008 8 7 5.4524 2.6054 0.0015 9 6 6.0708 3.6047 -0.6585 10 8 5.4141 4.4837 -1.1863 11 6 7.5297 3.6333 -0.7405 12 1 8.1090 2.8128 -0.3436 13 6 8.1767 4.7253 -1.3341 14 7 7.4758 5.6704 -1.9016 15 14 10.0418 4.8297 -1.3137 16 1 10.5824 4.2740 -2.5803 17 1 10.4566 6.2492 -1.1790 18 1 10.5687 4.0489 -0.1657 19 6 3.4312 1.2844 0.0005 20 9 4.1691 0.1527 0.0018 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 0.2123 2.3183 -0.0005 25 1 1.3248 4.5126 0.0000 26 1 3.7801 4.6528 0.0106 27 1 5.9759 1.9390 0.4734 28 1 7.9238 6.4261 -2.3128 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689992130.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:51 Heat of formation + Delta-G solvation = -117.353964 kcal Electronic energy + Delta-G solvation = -16512.895771 eV Core-core repulsion = 13442.885080 eV Total energy + Delta-G solvation = -3070.010691 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.76584 -41.10639 -39.99916 -37.92141 -35.23128 -34.53766 -31.22539 -30.51732 -28.37938 -27.94676 -23.92853 -23.57903 -21.72825 -19.73254 -19.18863 -18.19823 -17.88421 -17.33674 -17.04326 -16.78175 -16.06749 -15.85636 -15.55536 -15.39133 -14.94563 -14.61719 -13.70150 -13.44580 -13.26764 -13.12672 -12.86730 -12.78912 -12.63431 -12.14657 -12.08255 -12.03272 -11.08593 -10.87141 -9.95727 -9.24156 -8.92405 -8.41384 -6.99328 0.16439 0.34476 1.38986 1.40073 1.56929 2.06020 2.23633 2.31170 2.67761 2.88124 3.28218 3.48912 3.92154 3.96114 4.29929 4.42284 4.46067 4.47583 4.76272 4.90880 5.06725 5.22483 5.33428 5.41945 5.53165 5.71881 6.05639 6.15059 6.37812 6.73596 7.18418 8.25151 8.51738 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.051835 B = 0.005883 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.046874 B = 4758.154846 C = 5198.407798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.332 6.332 3 C 0.115 3.885 4 C -0.204 4.204 5 C -0.059 4.059 6 C -0.166 4.166 7 C 0.166 3.834 8 N -0.691 5.691 9 C 0.530 3.470 10 O -0.598 6.598 11 C -0.565 4.565 12 H 0.090 0.910 13 C 0.032 3.968 14 N -0.808 5.808 15 Si 1.002 2.998 16 H -0.262 1.262 17 H -0.268 1.268 18 H -0.249 1.249 19 C -0.013 4.013 20 F -0.146 7.146 21 H 0.069 0.931 22 H 0.122 0.878 23 H 0.074 0.926 24 H 0.177 0.823 25 H 0.162 0.838 26 H 0.120 0.880 27 H 0.405 0.595 28 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.845 -6.998 4.794 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.068 3.932 4 C -0.223 4.223 5 C -0.077 4.077 6 C -0.187 4.187 7 C 0.066 3.934 8 N -0.335 5.335 9 C 0.338 3.662 10 O -0.483 6.483 11 C -0.600 4.600 12 H 0.108 0.892 13 C -0.185 4.185 14 N -0.436 5.436 15 Si 0.821 3.179 16 H -0.187 1.187 17 H -0.193 1.193 18 H -0.172 1.172 19 C -0.036 4.036 20 F -0.125 7.125 21 H 0.088 0.912 22 H 0.140 0.860 23 H 0.093 0.907 24 H 0.194 0.806 25 H 0.180 0.820 26 H 0.137 0.863 27 H 0.240 0.760 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.124 -6.429 4.300 13.549 hybrid contribution 1.111 -0.255 0.055 1.141 sum -10.013 -6.684 4.355 12.802 Atomic orbital electron populations 1.23478 0.75423 1.05957 1.02973 1.86083 1.24383 1.25479 1.88679 1.18727 0.89307 0.86745 0.98396 1.21352 1.01516 0.89855 1.09604 1.21211 0.92603 0.98930 0.94984 1.21255 0.94809 0.97300 1.05322 1.17980 0.85374 0.92131 0.97866 1.43716 1.03020 1.31924 1.54790 1.18744 0.89703 0.79928 0.77814 1.90572 1.67321 1.39267 1.51146 1.21369 0.89524 1.07652 1.41484 0.89166 1.26992 1.06480 0.93516 0.91532 1.70123 1.39822 1.08270 1.25409 0.84929 0.74206 0.78733 0.80023 1.18682 1.19259 1.17242 1.16929 0.87430 0.81051 1.18232 1.91376 1.77062 1.48894 1.95211 0.91192 0.86018 0.90713 0.80609 0.82008 0.86258 0.75967 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 15 2 O -0.33 -9.55 10.36 -93.01 -0.96 -10.52 15 3 C 0.12 3.81 6.69 22.51 0.15 3.96 15 4 C -0.20 -5.53 9.04 22.41 0.20 -5.33 15 5 C -0.06 -1.84 10.03 22.25 0.22 -1.62 15 6 C -0.17 -7.09 8.69 22.43 0.19 -6.90 15 7 C 0.17 7.49 6.31 38.31 0.24 7.74 15 8 N -0.69 -33.96 5.21 -307.41 -1.60 -35.56 15 9 C 0.53 30.96 7.58 86.29 0.65 31.62 15 10 O -0.60 -38.67 12.44 -4.54 -0.06 -38.73 15 11 C -0.56 -31.81 9.53 24.78 0.24 -31.57 15 12 H 0.09 4.59 7.85 -2.91 -0.02 4.57 15 13 C 0.03 1.73 5.50 85.33 0.47 2.20 15 14 N -0.81 -47.77 11.84 21.85 0.26 -47.52 15 15 Si 1.00 39.94 29.56 68.60 2.03 41.96 15 16 H -0.26 -10.02 7.11 99.48 0.71 -9.31 15 17 H -0.27 -10.20 7.11 99.48 0.71 -9.49 15 18 H -0.25 -9.30 7.11 99.48 0.71 -8.59 15 19 C -0.01 -0.54 7.32 22.59 0.17 -0.38 15 20 F -0.15 -6.07 16.79 44.97 0.75 -5.32 15 21 H 0.07 0.93 7.66 -2.39 -0.02 0.91 15 22 H 0.12 1.34 8.14 -2.39 -0.02 1.32 15 23 H 0.07 0.92 7.66 -2.39 -0.02 0.90 15 24 H 0.18 3.07 6.29 -2.91 -0.02 3.05 15 25 H 0.16 3.87 8.06 -2.91 -0.02 3.85 15 26 H 0.12 5.96 6.19 -2.91 -0.02 5.94 15 27 H 0.41 17.78 8.62 -92.71 -0.80 16.98 15 28 H 0.28 14.87 8.29 -92.71 -0.77 14.10 15 Total: -1.00 -74.86 256.78 4.48 -70.38 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.41 Total: 24.23 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 3.65 Total: 1.07 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -1.34 Total: -83.08 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -1.02 Total: -49.25 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.75 Total: -5.32 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.96 kcal Total: -74.86 4.48 -70.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689992130.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.973 kcal (2) G-P(sol) polarization free energy of solvation -74.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds