Wall clock time and date at job start Sun Mar 29 2020 21:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36701 * 120.00089 * 2 1 4 4 H 1.08000 * 120.00344 * 207.32889 * 3 2 1 5 5 C 1.39169 * 119.99856 * 27.32565 * 3 2 1 6 6 N 1.31277 * 120.00598 * 24.84279 * 5 3 2 7 7 Si 1.86808 * 119.99725 * 204.84513 * 5 3 2 8 8 H 1.48495 * 109.47139 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.46993 * 120.00064 * 7 5 3 10 10 H 1.48495 * 109.46975 * 239.99627 * 7 5 3 11 11 C 1.34769 * 120.00181 * 179.97438 * 2 1 3 12 12 O 1.21537 * 120.00201 * 182.34382 * 11 2 1 13 13 C 1.48255 * 119.99741 * 2.34003 * 11 2 1 14 14 C 1.39298 * 120.49093 * 172.65907 * 13 11 2 15 15 C 1.39528 * 118.31904 * 180.02562 * 14 13 11 16 16 O 1.35512 * 120.45043 * 180.02562 * 15 14 13 17 17 N 1.32664 * 119.10297 * 359.97438 * 15 14 13 18 18 C 1.32374 * 120.91009 * 0.02562 * 17 15 14 19 19 O 1.35462 * 119.07652 * 179.97438 * 18 17 15 20 20 N 1.32083 * 121.84762 * 0.27821 * 18 17 15 21 21 H 1.08998 * 109.47238 * 263.82773 * 1 2 3 22 22 H 1.09003 * 109.47008 * 23.83084 * 1 2 3 23 23 H 1.08995 * 109.46847 * 143.82329 * 1 2 3 24 24 H 0.96994 * 120.00480 * 179.97438 * 6 5 3 25 25 H 1.07996 * 120.84068 * 0.02562 * 14 13 11 26 26 H 0.96702 * 113.99400 * 269.97708 * 16 15 14 27 27 H 0.96696 * 113.99900 * 89.99784 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1485 1.1839 0.0000 4 1 3.1381 1.2361 -0.4294 5 6 1.5691 2.3218 0.5533 6 7 0.6421 2.2044 1.4754 7 14 2.1106 4.0166 -0.0163 8 1 3.1608 3.8770 -1.0567 9 1 0.9464 4.7436 -0.5832 10 1 2.6543 4.7764 1.1379 11 6 2.1389 -1.1671 0.0005 12 8 3.3535 -1.1675 0.0436 13 6 1.3985 -2.4505 -0.0513 14 6 2.0815 -3.6548 -0.2047 15 6 1.3396 -4.8357 -0.2484 16 8 1.9599 -6.0314 -0.3958 17 7 0.0187 -4.7720 -0.1426 18 6 -0.5966 -3.6090 0.0022 19 8 -1.9471 -3.5872 0.1062 20 7 0.0687 -2.4687 0.0422 21 1 -0.3633 -0.1105 1.0217 22 1 -0.3633 0.9401 -0.4152 23 1 -0.3633 -0.8295 -0.6066 24 1 0.2386 2.9976 1.8612 25 1 3.1581 -3.6740 -0.2878 26 1 2.0735 -6.3046 -1.3164 27 1 -2.2728 -3.6550 1.0142 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701262709.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:51 Heat of formation + Delta-G solvation = -30.981474 kcal Electronic energy + Delta-G solvation = -16822.596005 eV Core-core repulsion = 13776.250668 eV Total energy + Delta-G solvation = -3046.345337 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.02532 -38.44412 -38.02938 -36.40774 -34.87528 -33.12063 -31.78249 -30.44204 -26.58548 -25.63256 -23.82089 -23.65387 -20.62759 -18.66139 -18.31995 -17.83829 -16.97930 -15.80580 -15.57153 -15.41110 -15.04318 -14.63802 -14.17151 -14.10104 -12.91647 -12.71563 -12.37286 -11.92470 -11.81182 -11.54316 -11.43218 -11.14227 -10.68399 -10.48769 -10.38284 -10.13489 -9.28718 -9.16968 -9.03101 -8.39129 -7.82412 -6.67280 -4.06263 0.84929 0.97383 2.99749 3.04659 3.13398 3.20401 3.31361 3.81340 3.90566 4.26794 4.36044 4.90403 5.02566 5.12614 5.31873 5.64094 5.84069 6.23848 6.65214 6.86156 6.98562 7.18837 7.29239 7.37034 7.57285 7.89526 8.13810 8.25840 8.91994 9.11564 9.77738 10.34278 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.039920 B = 0.006972 C = 0.006073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.242965 B = 4015.372325 C = 4609.358589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.386 5.386 3 C -0.306 4.306 4 H 0.108 0.892 5 C 0.042 3.958 6 N -0.833 5.833 7 Si 0.926 3.074 8 H -0.262 1.262 9 H -0.276 1.276 10 H -0.277 1.277 11 C 0.454 3.546 12 O -0.586 6.586 13 C 0.193 3.807 14 C -0.210 4.210 15 C 0.369 3.631 16 O -0.475 6.475 17 N -0.563 5.563 18 C 0.505 3.495 19 O -0.459 6.459 20 N -0.505 5.505 21 H 0.058 0.942 22 H 0.053 0.947 23 H 0.081 0.919 24 H 0.276 0.724 25 H 0.163 0.837 26 H 0.405 0.595 27 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.357 -7.711 -3.008 8.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.099 5.099 3 C -0.436 4.436 4 H 0.125 0.875 5 C -0.168 4.168 6 N -0.467 5.467 7 Si 0.751 3.249 8 H -0.186 1.186 9 H -0.201 1.201 10 H -0.203 1.203 11 C 0.244 3.756 12 O -0.473 6.473 13 C 0.048 3.952 14 C -0.235 4.235 15 C 0.183 3.817 16 O -0.282 6.282 17 N -0.301 5.301 18 C 0.200 3.800 19 O -0.262 6.262 20 N -0.235 5.235 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.099 0.901 24 H 0.086 0.914 25 H 0.180 0.820 26 H 0.264 0.736 27 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -3.911 -7.524 -2.788 8.926 hybrid contribution 0.642 0.560 -0.074 0.855 sum -3.269 -6.964 -2.861 8.208 Atomic orbital electron populations 1.22157 0.79704 1.00860 1.02195 1.43685 1.06688 1.04497 1.55000 1.19888 1.03245 0.83989 1.36462 0.87453 1.25563 0.96458 1.00979 0.93799 1.70021 1.25342 1.31606 1.19759 0.85889 0.79095 0.80660 0.79303 1.18599 1.20095 1.20301 1.17353 0.86880 0.81864 0.89547 1.90632 1.12276 1.85323 1.59045 1.22039 0.87429 0.95959 0.89784 1.22840 1.04075 0.91256 1.05334 1.18961 0.85594 0.85128 0.92005 1.84727 1.76508 1.34225 1.32703 1.67168 1.11642 1.31489 1.19839 1.20043 0.85531 0.82841 0.91553 1.84688 1.13018 1.94749 1.33738 1.68842 1.09051 1.28310 1.17341 0.92376 0.92798 0.90143 0.91356 0.81972 0.73608 0.73129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.16 7.75 59.85 0.46 2.62 15 2 N -0.39 -9.93 2.98 -123.15 -0.37 -10.30 15 3 C -0.31 -8.24 9.06 -15.04 -0.14 -8.38 15 4 H 0.11 2.97 7.61 -52.49 -0.40 2.57 15 5 C 0.04 1.06 4.71 -17.44 -0.08 0.98 15 6 N -0.83 -21.39 11.85 55.51 0.66 -20.73 15 7 Si 0.93 19.22 29.62 -169.99 -5.04 14.18 15 8 H -0.26 -5.42 7.11 56.52 0.40 -5.02 15 9 H -0.28 -5.56 7.11 56.52 0.40 -5.16 15 10 H -0.28 -5.73 7.11 56.52 0.40 -5.33 15 11 C 0.45 11.43 7.62 -12.15 -0.09 11.34 15 12 O -0.59 -16.19 16.19 5.33 0.09 -16.10 15 13 C 0.19 4.05 6.64 -82.71 -0.55 3.50 15 14 C -0.21 -3.76 9.67 -38.71 -0.37 -4.14 15 15 C 0.37 5.93 7.83 -16.71 -0.13 5.80 15 16 O -0.47 -6.04 13.57 -18.23 -0.25 -6.29 15 17 N -0.56 -9.60 10.47 -14.81 -0.16 -9.76 15 18 C 0.51 8.76 8.70 -91.41 -0.80 7.96 15 19 O -0.46 -6.58 13.64 -18.08 -0.25 -6.83 15 20 N -0.50 -9.86 6.24 -11.36 -0.07 -9.93 15 21 H 0.06 1.38 7.93 -51.93 -0.41 0.96 15 22 H 0.05 1.24 7.20 -51.93 -0.37 0.87 15 23 H 0.08 1.71 5.25 -51.96 -0.27 1.44 15 24 H 0.28 6.53 8.31 -40.82 -0.34 6.20 15 25 H 0.16 2.78 7.74 -52.49 -0.41 2.37 15 26 H 0.41 2.86 9.06 45.56 0.41 3.28 15 27 H 0.41 3.72 9.06 45.56 0.41 4.13 15 LS Contribution 250.02 15.07 3.77 3.77 Total: -1.00 -32.52 250.02 -3.48 -36.00 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -0.17 Total: 6.31 kcal Atomic # 6 Polarization: 21.38 SS G_CDS: -1.70 Total: 19.69 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.07 Total: -50.73 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.41 Total: -29.22 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.04 Total: 14.18 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.52 -3.48 -36.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701262709.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.016 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds