Wall clock time and date at job start Sun Mar 29 2020 21:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00162 * 2 1 4 4 H 1.48503 * 109.47334 * 269.99819 * 3 2 1 5 5 H 1.48502 * 109.47189 * 30.00141 * 3 2 1 6 6 H 1.48501 * 109.47145 * 150.00072 * 3 2 1 7 7 C 1.38949 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99933 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99997 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99866 * 180.02562 * 9 7 2 11 11 O 1.21296 * 120.00373 * 359.97438 * 10 9 7 12 12 C 1.50709 * 119.99950 * 179.97438 * 10 9 7 13 13 O 1.45200 * 109.46889 * 179.97438 * 12 10 9 14 14 C 1.34895 * 116.99402 * 179.97438 * 13 12 10 15 15 O 1.21622 * 120.00358 * 359.97438 * 14 13 12 16 16 C 1.46470 * 119.99835 * 179.97438 * 14 13 12 17 17 C 1.36644 * 125.99901 * 180.02562 * 16 14 13 18 18 C 1.40309 * 106.70356 * 180.02562 * 17 16 14 19 19 C 1.35164 * 107.12857 * 359.97438 * 18 17 16 20 20 O 1.33914 * 108.78284 * 359.97438 * 19 18 17 21 21 H 0.96998 * 119.99393 * 0.02562 * 1 2 3 22 22 H 0.96991 * 120.00098 * 359.97438 * 9 7 2 23 23 H 1.08998 * 109.46691 * 59.99376 * 12 10 9 24 24 H 1.09003 * 109.46594 * 299.99510 * 12 10 9 25 25 H 1.08003 * 126.64401 * 0.02562 * 17 16 14 26 26 H 1.08004 * 126.43398 * 180.02562 * 18 17 16 27 27 H 1.07999 * 125.61053 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3906 -0.0016 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0011 12 6 1.2436 -4.8630 -0.0022 13 8 2.1872 -5.9666 -0.0027 14 6 1.6715 -7.2131 -0.0027 15 8 0.4658 -7.3724 -0.0018 16 6 2.5637 -8.3747 -0.0037 17 6 2.1762 -9.6850 -0.0044 18 6 3.3505 -10.4529 -0.0047 19 6 4.3906 -9.5896 -0.0048 20 8 3.9126 -8.3387 -0.0052 21 1 -0.4849 0.8401 -0.0004 22 1 0.3534 -2.3906 -0.0016 23 1 0.6172 -4.9204 -0.8924 24 1 0.6167 -4.9209 0.8876 25 1 1.1624 -10.0574 -0.0046 26 1 3.4118 -11.5312 -0.0056 27 1 5.4352 -9.8636 -0.0055 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731235880.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:04 Heat of formation + Delta-G solvation = -100.198888 kcal Electronic energy + Delta-G solvation = -15937.780126 eV Core-core repulsion = 12856.140546 eV Total energy + Delta-G solvation = -3081.639581 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.84896 -40.10911 -38.12227 -36.20974 -34.00154 -33.28789 -31.39171 -30.50135 -28.30951 -24.89533 -23.64371 -21.97648 -20.61205 -19.59409 -18.60543 -18.07268 -16.96986 -16.78966 -16.21117 -15.81693 -15.53669 -14.58409 -13.99670 -13.96248 -13.57469 -13.20076 -12.99860 -12.88666 -12.35849 -12.08269 -11.61762 -11.13185 -10.84488 -10.48587 -10.43309 -10.29209 -10.29098 -9.60221 -8.97124 -8.52528 -8.07928 -6.49510 -3.91464 0.76129 2.09437 2.28441 2.85535 2.95742 3.13980 3.24148 3.30652 3.73815 4.11713 4.50525 4.63918 4.74251 5.02440 5.15129 5.32616 5.46244 5.51891 5.66606 5.67316 6.02342 6.06106 6.42524 6.66555 7.48489 7.69843 7.94787 8.48910 9.07587 9.39463 9.89542 10.67721 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.063804 B = 0.004354 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.740866 B = 6428.974762 C = 6852.571394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.935 3.065 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.438 3.562 11 O -0.574 6.574 12 C 0.060 3.940 13 O -0.314 6.314 14 C 0.547 3.453 15 O -0.493 6.493 16 C -0.055 4.055 17 C -0.112 4.112 18 C -0.231 4.231 19 C 0.004 3.996 20 O -0.144 6.144 21 H 0.274 0.726 22 H 0.395 0.605 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.164 0.836 26 H 0.160 0.840 27 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.951 -16.884 -0.003 17.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.190 5.190 10 C 0.223 3.777 11 O -0.458 6.458 12 C -0.017 4.017 13 O -0.228 6.228 14 C 0.391 3.609 15 O -0.383 6.383 16 C -0.106 4.106 17 C -0.132 4.132 18 C -0.250 4.250 19 C -0.066 4.066 20 O -0.037 6.037 21 H 0.084 0.916 22 H 0.229 0.771 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.182 0.818 26 H 0.177 0.823 27 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.433 -16.417 0.003 16.772 hybrid contribution -0.450 0.596 -0.012 0.746 sum 2.984 -15.821 -0.009 16.100 Atomic orbital electron populations 1.69615 1.05992 1.28481 1.49669 1.25318 0.95706 0.99878 0.96900 0.85786 0.79220 0.80377 0.78493 1.20258 1.20808 1.19285 1.19730 0.93496 0.81724 1.48164 0.87599 1.41689 1.09376 1.04028 1.63871 1.19279 0.88340 0.84015 0.86084 1.90577 1.13381 1.86718 1.55091 1.22860 0.90753 0.84281 1.03853 1.86722 1.39837 1.13580 1.82613 1.19278 0.85626 0.82470 0.73519 1.90933 1.13989 1.86492 1.46901 1.20830 0.80862 0.93465 1.15424 1.21987 1.01039 0.90240 0.99950 1.21849 0.91505 1.01368 1.10305 1.24588 1.00467 0.80511 1.01067 1.84250 1.20038 1.30335 1.69113 0.91628 0.77120 0.89138 0.89130 0.81826 0.82279 0.77033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.13 13.05 55.50 0.72 -23.40 15 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 15 3 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 15 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 15 8 H 0.11 3.07 7.16 -52.49 -0.38 2.70 15 9 N -0.55 -14.09 5.29 -10.96 -0.06 -14.14 15 10 C 0.44 10.76 7.86 -10.98 -0.09 10.68 15 11 O -0.57 -16.34 16.08 -14.12 -0.23 -16.57 15 12 C 0.06 1.17 5.96 36.01 0.21 1.38 15 13 O -0.31 -6.26 9.77 -48.35 -0.47 -6.74 15 14 C 0.55 9.46 7.93 34.05 0.27 9.72 15 15 O -0.49 -8.82 16.66 -19.36 -0.32 -9.15 15 16 C -0.06 -0.81 7.18 -36.84 -0.26 -1.07 15 17 C -0.11 -1.28 10.62 -39.38 -0.42 -1.70 15 18 C -0.23 -2.02 10.87 -39.90 -0.43 -2.46 15 19 C 0.00 0.04 12.08 29.64 0.36 0.40 15 20 O -0.14 -2.01 10.67 4.72 0.05 -1.96 15 21 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 22 H 0.40 9.49 7.90 -40.82 -0.32 9.17 15 23 H 0.09 1.57 8.14 -51.93 -0.42 1.15 15 24 H 0.09 1.57 8.14 -51.93 -0.42 1.15 15 25 H 0.16 1.60 8.06 -52.48 -0.42 1.17 15 26 H 0.16 0.88 8.06 -52.48 -0.42 0.46 15 27 H 0.21 0.96 8.06 -52.49 -0.42 0.54 15 LS Contribution 263.88 15.07 3.98 3.98 Total: -1.00 -33.38 263.88 -3.90 -37.28 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -1.95 Total: 5.95 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -0.60 Total: 8.97 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.67 Total: -37.54 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.97 Total: -34.41 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.38 -3.90 -37.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235880.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.920 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds