Wall clock time and date at job start Sun Mar 29 2020 21:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00162 * 2 1 4 4 H 1.48503 * 109.47334 * 269.99819 * 3 2 1 5 5 H 1.48502 * 109.47189 * 30.00141 * 3 2 1 6 6 H 1.48501 * 109.47145 * 150.00072 * 3 2 1 7 7 C 1.38949 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99933 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99997 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99866 * 180.02562 * 9 7 2 11 11 O 1.21296 * 120.00373 * 359.97438 * 10 9 7 12 12 C 1.50709 * 119.99950 * 179.97438 * 10 9 7 13 13 O 1.45200 * 109.46889 * 179.97438 * 12 10 9 14 14 C 1.34895 * 116.99402 * 179.97438 * 13 12 10 15 15 O 1.21622 * 120.00358 * 359.97438 * 14 13 12 16 16 C 1.46470 * 119.99835 * 179.97438 * 14 13 12 17 17 C 1.36644 * 125.99901 * 180.02562 * 16 14 13 18 18 C 1.40309 * 106.70356 * 180.02562 * 17 16 14 19 19 C 1.35164 * 107.12857 * 359.97438 * 18 17 16 20 20 O 1.33914 * 108.78284 * 359.97438 * 19 18 17 21 21 H 0.96998 * 119.99393 * 0.02562 * 1 2 3 22 22 H 0.96991 * 120.00098 * 359.97438 * 9 7 2 23 23 H 1.08998 * 109.46691 * 59.99376 * 12 10 9 24 24 H 1.09003 * 109.46594 * 299.99510 * 12 10 9 25 25 H 1.08003 * 126.64401 * 0.02562 * 17 16 14 26 26 H 1.08004 * 126.43398 * 180.02562 * 18 17 16 27 27 H 1.07999 * 125.61053 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3906 -0.0016 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0011 12 6 1.2436 -4.8630 -0.0022 13 8 2.1872 -5.9666 -0.0027 14 6 1.6715 -7.2131 -0.0027 15 8 0.4658 -7.3724 -0.0018 16 6 2.5637 -8.3747 -0.0037 17 6 2.1762 -9.6850 -0.0044 18 6 3.3505 -10.4529 -0.0047 19 6 4.3906 -9.5896 -0.0048 20 8 3.9126 -8.3387 -0.0052 21 1 -0.4849 0.8401 -0.0004 22 1 0.3534 -2.3906 -0.0016 23 1 0.6172 -4.9204 -0.8924 24 1 0.6167 -4.9209 0.8876 25 1 1.1624 -10.0574 -0.0046 26 1 3.4118 -11.5312 -0.0056 27 1 5.4352 -9.8636 -0.0055 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731235880.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:04 Heat of formation + Delta-G solvation = -123.556671 kcal Electronic energy + Delta-G solvation = -15938.792996 eV Core-core repulsion = 12856.140546 eV Total energy + Delta-G solvation = -3082.652450 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.73743 -41.51594 -40.03714 -37.66910 -36.06749 -34.15292 -33.45083 -31.54095 -29.87626 -26.75295 -24.89659 -22.80144 -21.72181 -21.48297 -20.10662 -19.73619 -18.26441 -18.04269 -17.76506 -17.02146 -16.99731 -16.45378 -15.81248 -15.65767 -14.88459 -14.28121 -14.02637 -13.98755 -13.77918 -13.60064 -13.56909 -12.95383 -12.49702 -12.17988 -12.11545 -11.98499 -11.60312 -11.11696 -10.56183 -10.14229 -9.83280 -8.54046 -6.04973 -0.26897 1.09844 1.28925 1.34919 1.42703 1.55900 1.75108 1.84333 1.93296 2.30044 3.02355 3.11141 3.60715 3.86872 3.94138 4.06132 4.10847 4.18541 4.48835 4.84263 4.87259 5.04613 5.35188 5.35492 5.80258 5.87480 6.38643 6.49247 7.00615 7.36656 7.90590 8.62909 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.063804 B = 0.004354 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.740866 B = 6428.974762 C = 6852.571394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.009 4.009 3 Si 1.000 3.000 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.340 4.340 8 H 0.084 0.916 9 N -0.555 5.555 10 C 0.435 3.565 11 O -0.620 6.620 12 C 0.070 3.930 13 O -0.340 6.340 14 C 0.547 3.453 15 O -0.509 6.509 16 C -0.110 4.110 17 C -0.091 4.091 18 C -0.228 4.228 19 C 0.021 3.979 20 O -0.176 6.176 21 H 0.282 0.718 22 H 0.401 0.599 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.178 0.822 26 H 0.199 0.801 27 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.226 -18.260 -0.022 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.210 4.210 3 Si 0.823 3.177 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.469 4.469 8 H 0.102 0.898 9 N -0.193 5.193 10 C 0.222 3.778 11 O -0.507 6.507 12 C -0.007 4.007 13 O -0.255 6.255 14 C 0.393 3.607 15 O -0.401 6.401 16 C -0.159 4.159 17 C -0.111 4.111 18 C -0.247 4.247 19 C -0.049 4.049 20 O -0.071 6.071 21 H 0.091 0.909 22 H 0.236 0.764 23 H 0.131 0.869 24 H 0.131 0.869 25 H 0.195 0.805 26 H 0.216 0.784 27 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 3.663 -17.812 -0.017 18.184 hybrid contribution -0.481 0.858 -0.006 0.984 sum 3.182 -16.953 -0.024 17.249 Atomic orbital electron populations 1.69671 1.06929 1.29805 1.48934 1.26153 0.96637 1.02621 0.95554 0.84831 0.77849 0.76227 0.78833 1.19386 1.19264 1.19629 1.19723 0.92943 0.83357 1.50836 0.89850 1.41716 1.09598 1.04076 1.63862 1.20068 0.88051 0.85388 0.84337 1.90535 1.15577 1.87684 1.56858 1.22655 0.89990 0.82029 1.05985 1.86706 1.40606 1.14721 1.83448 1.19667 0.86161 0.82039 0.72804 1.90896 1.14546 1.86511 1.48123 1.20654 0.81359 0.93292 1.20626 1.22392 1.02736 0.89202 0.96758 1.22313 0.89903 1.03073 1.09384 1.25670 1.02654 0.78912 0.97641 1.84225 1.19838 1.32942 1.70128 0.90882 0.76416 0.86895 0.86892 0.80494 0.78413 0.72634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.74 13.05 21.66 0.28 -48.46 15 2 C -0.01 -0.46 5.50 84.93 0.47 0.00 15 3 Si 1.00 42.37 29.55 68.60 2.03 44.40 15 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 15 5 H -0.27 -10.68 7.11 99.48 0.71 -9.98 15 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 15 7 C -0.34 -19.36 9.68 84.04 0.81 -18.54 15 8 H 0.08 5.05 7.16 -2.91 -0.02 5.03 15 9 N -0.56 -29.03 5.29 -306.97 -1.62 -30.66 15 10 C 0.43 22.02 7.86 87.66 0.69 22.71 15 11 O -0.62 -36.74 16.08 15.72 0.25 -36.49 15 12 C 0.07 2.78 5.96 71.24 0.42 3.20 15 13 O -0.34 -13.96 9.77 -51.09 -0.50 -14.45 15 14 C 0.55 19.24 7.93 69.97 0.55 19.79 15 15 O -0.51 -18.30 16.66 19.44 0.32 -17.98 15 16 C -0.11 -3.20 7.18 24.04 0.17 -3.02 15 17 C -0.09 -1.90 10.62 22.40 0.24 -1.66 15 18 C -0.23 -3.15 10.87 22.07 0.24 -2.91 15 19 C 0.02 0.32 12.08 67.11 0.81 1.13 15 20 O -0.18 -4.81 10.67 -4.95 -0.05 -4.86 15 21 H 0.28 13.97 8.31 -92.71 -0.77 13.20 15 22 H 0.40 19.60 7.90 -92.71 -0.73 18.87 15 23 H 0.11 3.91 8.14 -2.39 -0.02 3.89 15 24 H 0.11 3.92 8.14 -2.39 -0.02 3.90 15 25 H 0.18 3.08 8.06 -2.91 -0.02 3.05 15 26 H 0.20 1.14 8.06 -2.91 -0.02 1.12 15 27 H 0.26 1.16 8.06 -2.91 -0.02 1.14 15 Total: -1.00 -74.39 263.88 5.61 -68.78 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.49 Total: 19.03 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 4.41 Total: 20.69 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -1.34 Total: -79.12 kcal Atomic # 8 Polarization: -73.81 SS G_CDS: 0.02 Total: -73.78 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -74.39 5.61 -68.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235880.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.774 kcal (2) G-P(sol) polarization free energy of solvation -74.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds