Wall clock time and date at job start Sun Mar 29 2020 21:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86802 * 119.99573 * 2 1 4 4 H 1.48501 * 109.46809 * 269.99311 * 3 2 1 5 5 H 1.48493 * 109.47466 * 29.99628 * 3 2 1 6 6 H 1.48504 * 109.47193 * 150.00073 * 3 2 1 7 7 C 1.38946 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00001 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.34783 * 120.00328 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99270 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00378 * 179.97438 * 10 9 7 13 13 O 1.45201 * 109.47233 * 179.97438 * 12 10 9 14 14 C 1.34728 * 117.00015 * 180.02562 * 13 12 10 15 15 O 1.21489 * 119.99905 * 0.02562 * 14 13 12 16 16 C 1.47584 * 120.00092 * 180.02562 * 14 13 12 17 17 C 1.41543 * 126.52747 * 179.97438 * 16 14 13 18 18 C 1.35343 * 105.50474 * 180.02562 * 17 16 14 19 19 N 1.35043 * 107.24150 * 359.97438 * 18 17 16 20 20 H 0.96995 * 124.88281 * 180.02562 * 19 18 17 21 21 N 1.28474 * 110.23957 * 359.97438 * 19 18 17 22 22 H 0.96992 * 120.00393 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99876 * 359.97438 * 9 7 2 24 24 H 1.09010 * 109.46649 * 59.99956 * 12 10 9 25 25 H 1.08999 * 109.47433 * 300.00343 * 12 10 9 26 26 H 1.08000 * 127.24680 * 0.02562 * 17 16 14 27 27 H 1.07995 * 126.38024 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4404 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5579 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2440 -4.8629 0.0011 13 8 2.1876 -5.9665 0.0004 14 6 1.6727 -7.2115 0.0003 15 8 0.4683 -7.3707 0.0003 16 6 2.5717 -8.3819 0.0001 17 6 2.1829 -9.7429 0.0004 18 6 3.3376 -10.4490 0.0007 19 7 4.3519 -9.5576 -0.0001 20 1 5.2938 -9.7890 -0.0004 21 7 3.8900 -8.3587 -0.0013 22 1 -0.4850 0.8399 -0.0004 23 1 0.3535 -2.3906 0.0005 24 1 0.6170 -4.9208 -0.8887 25 1 0.6176 -4.9205 0.8913 26 1 1.1767 -10.1353 0.0005 27 1 3.4304 -11.5250 0.0006 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731242127.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:59 Heat of formation + Delta-G solvation = -40.641537 kcal Electronic energy + Delta-G solvation = -15900.948452 eV Core-core repulsion = 12854.184223 eV Total energy + Delta-G solvation = -3046.764229 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.82137 -39.94251 -38.02806 -35.98794 -33.93656 -32.17616 -31.31801 -30.97960 -28.39846 -25.08557 -23.97753 -21.97085 -20.31094 -19.50746 -18.71081 -17.99739 -17.40742 -16.40122 -16.22646 -15.48763 -15.46331 -14.51253 -13.93331 -13.92216 -13.84886 -13.53319 -12.87375 -12.24385 -11.95366 -11.57385 -11.09311 -11.08586 -10.61724 -10.39996 -10.33224 -10.24601 -9.68561 -9.54899 -9.44983 -8.44785 -8.02322 -6.44628 -3.86334 1.33666 1.87781 2.46056 2.96618 3.17058 3.20223 3.26862 3.33556 3.80779 4.14629 4.35101 4.59198 4.88450 5.19427 5.20455 5.36887 5.45576 5.63534 5.76788 6.07503 6.13272 6.61720 6.72303 7.53050 7.56897 7.94248 8.03853 8.55116 9.12893 9.45541 9.96168 10.72769 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.064191 B = 0.004324 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.093354 B = 6474.551897 C = 6895.501505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.301 4.301 8 H 0.106 0.894 9 N -0.555 5.555 10 C 0.440 3.560 11 O -0.572 6.572 12 C 0.059 3.941 13 O -0.310 6.310 14 C 0.550 3.450 15 O -0.505 6.505 16 C 0.003 3.997 17 C -0.175 4.175 18 C -0.019 4.019 19 N -0.380 5.380 20 H 0.449 0.551 21 N -0.221 5.221 22 H 0.273 0.727 23 H 0.395 0.605 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.167 0.833 27 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.336 -18.698 0.012 18.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.179 4.179 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.430 4.430 8 H 0.124 0.876 9 N -0.192 5.192 10 C 0.225 3.775 11 O -0.456 6.456 12 C -0.018 4.018 13 O -0.223 6.223 14 C 0.392 3.608 15 O -0.392 6.392 16 C -0.156 4.156 17 C -0.203 4.203 18 C -0.162 4.162 19 N -0.096 5.096 20 H 0.294 0.706 21 N -0.059 5.059 22 H 0.083 0.917 23 H 0.229 0.771 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.184 0.816 27 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 4.490 -17.777 0.017 18.336 hybrid contribution -0.606 0.101 -0.011 0.614 sum 3.884 -17.676 0.005 18.098 Atomic orbital electron populations 1.69614 1.05964 1.28391 1.49931 1.25304 0.95694 0.99820 0.97040 0.85797 0.79212 0.80475 0.78448 1.20309 1.20852 1.19321 1.19723 0.93474 0.81775 1.47994 0.87648 1.41696 1.09354 1.04033 1.64144 1.19316 0.88350 0.84055 0.85806 1.90576 1.13399 1.86747 1.54863 1.22813 0.90850 0.84475 1.03684 1.86694 1.39572 1.13503 1.82530 1.19627 0.85745 0.82576 0.72866 1.90844 1.14970 1.86788 1.46593 1.20862 0.89723 0.92689 1.12349 1.21791 1.00077 0.90455 1.07957 1.22971 0.87396 0.97799 1.08050 1.43546 1.10448 1.03020 1.52567 0.70632 1.73902 1.11935 1.04132 1.15942 0.91695 0.77149 0.89313 0.89305 0.81561 0.79482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.47 13.05 55.50 0.72 -23.75 15 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 15 3 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 15 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 7 C -0.30 -8.47 9.68 -14.94 -0.14 -8.62 15 8 H 0.11 3.10 7.16 -52.49 -0.38 2.73 15 9 N -0.55 -14.40 5.29 -10.97 -0.06 -14.46 15 10 C 0.44 11.04 7.86 -10.99 -0.09 10.96 15 11 O -0.57 -16.60 16.08 -14.11 -0.23 -16.82 15 12 C 0.06 1.20 5.95 36.00 0.21 1.41 15 13 O -0.31 -6.43 9.77 -47.25 -0.46 -6.89 15 14 C 0.55 9.94 7.97 34.54 0.28 10.22 15 15 O -0.51 -9.43 16.72 -19.26 -0.32 -9.75 15 16 C 0.00 0.04 7.17 -82.79 -0.59 -0.55 15 17 C -0.18 -1.91 10.81 -39.35 -0.43 -2.33 15 18 C -0.02 -0.14 12.02 -17.17 -0.21 -0.34 15 19 N -0.38 -3.33 6.83 30.47 0.21 -3.13 15 20 H 0.45 2.04 8.96 -190.44 -1.71 0.34 15 21 N -0.22 -3.18 12.24 33.41 0.41 -2.77 15 22 H 0.27 7.02 8.31 -40.82 -0.34 6.68 15 23 H 0.39 9.67 7.90 -40.82 -0.32 9.35 15 24 H 0.09 1.60 8.14 -51.92 -0.42 1.18 15 25 H 0.09 1.60 8.14 -51.93 -0.42 1.18 15 26 H 0.17 1.53 8.06 -52.49 -0.42 1.11 15 27 H 0.19 0.48 8.06 -52.49 -0.42 0.06 15 LS Contribution 262.51 15.07 3.96 3.96 Total: -1.00 -35.83 262.51 -5.09 -40.92 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -3.23 Total: 5.36 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: -1.06 Total: 11.28 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 1.28 Total: -44.11 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.01 Total: -33.46 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -35.83 -5.09 -40.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242127.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.280 kcal (2) G-P(sol) polarization free energy of solvation -35.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds