Wall clock time and date at job start Sun Mar 29 2020 21:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86793 * 120.00432 * 2 1 4 4 H 1.48497 * 109.47551 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47089 * 300.00138 * 3 2 1 6 6 H 1.48511 * 109.47109 * 59.99730 * 3 2 1 7 7 C 1.38986 * 119.99613 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99769 * 192.12158 * 7 2 1 9 9 N 1.36960 * 120.00041 * 11.85251 * 7 2 1 10 10 C 1.46497 * 120.00481 * 53.40424 * 9 7 2 11 11 C 1.50696 * 109.46943 * 97.19951 * 10 9 7 12 12 O 1.20821 * 120.00676 * 0.02562 * 11 10 9 13 13 O 1.34236 * 119.99976 * 180.02562 * 11 10 9 14 14 C 1.34777 * 119.99571 * 233.40353 * 9 7 2 15 15 O 1.21640 * 120.00261 * 1.23006 * 14 9 7 16 16 C 1.47300 * 119.99743 * 181.22295 * 14 9 7 17 17 C 1.47033 * 127.19955 * 190.27649 * 16 14 9 18 18 C 1.34171 * 105.96599 * 179.97438 * 17 16 14 19 19 O 1.34224 * 109.13730 * 359.97438 * 18 17 16 20 20 C 1.33674 * 110.91497 * 359.75279 * 19 18 17 21 21 H 0.96998 * 119.99894 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47789 * 217.20397 * 10 9 7 23 23 H 1.09010 * 109.46821 * 337.20320 * 10 9 7 24 24 H 0.96696 * 117.00105 * 180.02562 * 13 11 10 25 25 H 1.08006 * 127.01785 * 359.94159 * 17 16 14 26 26 H 1.07994 * 125.43224 * 180.02562 * 18 17 16 27 27 H 1.08000 * 125.81136 * 180.26297 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2037 0.0005 8 1 3.0709 -1.2141 0.1969 9 7 1.3460 -2.3772 -0.2426 10 6 0.5245 -2.5186 -1.4473 11 6 1.3201 -3.2193 -2.5183 12 8 2.4565 -3.5656 -2.2978 13 8 0.7663 -3.4588 -3.7174 14 6 1.4493 -3.4021 0.6267 15 8 2.1133 -3.2771 1.6382 16 6 0.7581 -4.6734 0.3518 17 6 0.5866 -5.8087 1.2703 18 6 -0.1027 -6.7352 0.5872 19 8 -0.3618 -6.2710 -0.6453 20 6 0.1368 -5.0413 -0.8066 21 1 -0.4850 0.8400 0.0004 22 1 -0.3650 -3.1037 -1.2141 23 1 0.2275 -1.5317 -1.8024 24 1 1.3155 -3.9113 -4.3721 25 1 0.9433 -5.8821 2.2871 26 1 -0.4020 -7.7003 0.9684 27 1 0.0632 -4.4420 -1.7021 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739086123.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:25 Heat of formation + Delta-G solvation = -78.595965 kcal Electronic energy + Delta-G solvation = -17366.142860 eV Core-core repulsion = 14285.440053 eV Total energy + Delta-G solvation = -3080.702808 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.13613 -39.99258 -38.13167 -35.70613 -34.68731 -32.60372 -31.75606 -29.56841 -27.85260 -25.29854 -22.46016 -21.41636 -21.08179 -19.51154 -17.69807 -17.36937 -16.93819 -16.23900 -15.94951 -15.57886 -15.00020 -14.77259 -14.10558 -13.64357 -13.38483 -12.60726 -12.53725 -12.44353 -12.03615 -11.61789 -11.35625 -11.12811 -11.00902 -10.81404 -10.34230 -10.09070 -9.30302 -9.04812 -8.70545 -8.36341 -7.56538 -6.46677 -4.27951 1.89267 2.54713 2.60603 3.12713 3.21457 3.27432 3.33213 3.43407 4.04695 4.41326 4.63392 4.95444 5.03097 5.26817 5.47392 5.62320 5.81025 6.03126 6.07908 6.30575 6.36532 6.71253 6.85121 7.35138 7.47854 8.23675 8.28650 8.39706 9.02721 9.12972 9.82169 10.61060 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.027500 B = 0.009720 C = 0.008122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.935219 B = 2880.093182 C = 3446.647959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.045 3.955 3 Si 0.925 3.075 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.313 4.313 8 H 0.089 0.911 9 N -0.421 5.421 10 C 0.105 3.895 11 C 0.440 3.560 12 O -0.496 6.496 13 O -0.527 6.527 14 C 0.551 3.449 15 O -0.553 6.553 16 C -0.199 4.199 17 C -0.169 4.169 18 C -0.053 4.053 19 O -0.182 6.182 20 C -0.035 4.035 21 H 0.272 0.728 22 H 0.105 0.895 23 H 0.135 0.865 24 H 0.400 0.600 25 H 0.156 0.844 26 H 0.203 0.797 27 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.686 -7.580 -5.639 10.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.161 4.161 3 Si 0.751 3.249 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.441 4.441 8 H 0.107 0.893 9 N -0.141 5.141 10 C -0.021 4.021 11 C 0.280 3.720 12 O -0.382 6.382 13 O -0.339 6.339 14 C 0.340 3.660 15 O -0.434 6.434 16 C -0.204 4.204 17 C -0.188 4.188 18 C -0.119 4.119 19 O -0.079 6.079 20 C -0.104 4.104 21 H 0.082 0.918 22 H 0.123 0.877 23 H 0.153 0.847 24 H 0.258 0.742 25 H 0.173 0.827 26 H 0.220 0.780 27 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -3.559 -7.406 -4.950 9.593 hybrid contribution 0.753 0.620 -0.413 1.059 sum -2.806 -6.787 -5.364 9.094 Atomic orbital electron populations 1.69887 1.06153 1.28135 1.46456 1.25687 0.95448 1.00303 0.94668 0.85893 0.80210 0.80916 0.77918 1.18937 1.20440 1.20372 1.19372 0.93139 0.81753 1.49788 0.89326 1.42721 1.44287 1.12525 1.14585 1.21639 0.92898 1.03217 0.84350 1.25248 0.87685 0.76587 0.82518 1.90713 1.19342 1.47593 1.80524 1.84636 1.50297 1.73921 1.25022 1.17467 0.82544 0.82465 0.83509 1.90627 1.43002 1.82570 1.27193 1.22090 1.05354 0.98164 0.94801 1.22786 1.02531 0.92465 1.01052 1.23820 1.04199 1.00611 0.83254 1.83756 1.62837 1.28819 1.32453 1.25522 0.99509 0.84676 1.00644 0.91845 0.87724 0.84696 0.74203 0.82658 0.77996 0.77051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.90 12.23 55.50 0.68 -22.22 15 2 C 0.05 1.18 5.02 -17.46 -0.09 1.09 15 3 Si 0.92 20.42 29.57 -169.99 -5.03 15.39 15 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 7 C -0.31 -8.73 8.67 -14.98 -0.13 -8.86 15 8 H 0.09 2.60 7.86 -52.49 -0.41 2.19 15 9 N -0.42 -10.93 1.96 -117.36 -0.23 -11.16 15 10 C 0.11 2.24 5.03 -5.20 -0.03 2.21 15 11 C 0.44 8.40 5.57 36.00 0.20 8.60 15 12 O -0.50 -11.19 17.00 -18.75 -0.32 -11.51 15 13 O -0.53 -7.45 13.23 -39.27 -0.52 -7.97 15 14 C 0.55 14.60 7.35 -12.58 -0.09 14.51 15 15 O -0.55 -16.48 16.96 5.24 0.09 -16.39 15 16 C -0.20 -4.33 6.12 -103.28 -0.63 -4.97 15 17 C -0.17 -3.05 11.03 -37.45 -0.41 -3.47 15 18 C -0.05 -0.77 12.03 29.30 0.35 -0.41 15 19 O -0.18 -2.97 10.52 7.57 0.08 -2.89 15 20 C -0.03 -0.64 9.42 30.11 0.28 -0.36 15 21 H 0.27 6.66 8.31 -40.82 -0.34 6.33 15 22 H 0.11 1.99 5.14 -51.93 -0.27 1.73 15 23 H 0.14 2.96 6.60 -51.92 -0.34 2.62 15 24 H 0.40 3.81 9.10 45.56 0.41 4.22 15 25 H 0.16 2.62 8.06 -52.48 -0.42 2.20 15 26 H 0.20 1.89 8.06 -52.49 -0.42 1.46 15 27 H 0.21 3.61 3.04 -52.49 -0.16 3.46 15 LS Contribution 249.20 15.07 3.76 3.76 Total: -1.00 -34.41 249.20 -2.78 -37.19 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -0.75 Total: 7.46 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -0.54 Total: 8.34 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.45 Total: -33.38 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -0.67 Total: -38.76 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -34.41 -2.78 -37.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739086123.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.408 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds