Wall clock time and date at job start Sun Mar 29 2020 21:54:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31409 * 1
3 3 Si 1.86793 * 120.00432 * 2 1
4 4 H 1.48497 * 109.47551 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.47089 * 300.00138 * 3 2 1
6 6 H 1.48511 * 109.47109 * 59.99730 * 3 2 1
7 7 C 1.38986 * 119.99613 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99769 * 192.12158 * 7 2 1
9 9 N 1.36960 * 120.00041 * 11.85251 * 7 2 1
10 10 C 1.46497 * 120.00481 * 53.40424 * 9 7 2
11 11 C 1.50696 * 109.46943 * 97.19951 * 10 9 7
12 12 O 1.20821 * 120.00676 * 0.02562 * 11 10 9
13 13 O 1.34236 * 119.99976 * 180.02562 * 11 10 9
14 14 C 1.34777 * 119.99571 * 233.40353 * 9 7 2
15 15 O 1.21640 * 120.00261 * 1.23006 * 14 9 7
16 16 C 1.47300 * 119.99743 * 181.22295 * 14 9 7
17 17 C 1.47033 * 127.19955 * 190.27649 * 16 14 9
18 18 C 1.34171 * 105.96599 * 179.97438 * 17 16 14
19 19 O 1.34224 * 109.13730 * 359.97438 * 18 17 16
20 20 C 1.33674 * 110.91497 * 359.75279 * 19 18 17
21 21 H 0.96998 * 119.99894 * 359.97438 * 1 2 3
22 22 H 1.08996 * 109.47789 * 217.20397 * 10 9 7
23 23 H 1.09010 * 109.46821 * 337.20320 * 10 9 7
24 24 H 0.96696 * 117.00105 * 180.02562 * 13 11 10
25 25 H 1.08006 * 127.01785 * 359.94159 * 17 16 14
26 26 H 1.07994 * 125.43224 * 180.02562 * 18 17 16
27 27 H 1.08000 * 125.81136 * 180.26297 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2482 1.6176 0.0000
4 1 3.7081 1.3463 0.0006
5 1 1.8895 2.3963 -1.2125
6 1 1.8894 2.3964 1.2126
7 6 2.0089 -1.2037 0.0005
8 1 3.0709 -1.2141 0.1969
9 7 1.3460 -2.3772 -0.2426
10 6 0.5245 -2.5186 -1.4473
11 6 1.3201 -3.2193 -2.5183
12 8 2.4565 -3.5656 -2.2978
13 8 0.7663 -3.4588 -3.7174
14 6 1.4493 -3.4021 0.6267
15 8 2.1133 -3.2771 1.6382
16 6 0.7581 -4.6734 0.3518
17 6 0.5866 -5.8087 1.2703
18 6 -0.1027 -6.7352 0.5872
19 8 -0.3618 -6.2710 -0.6453
20 6 0.1368 -5.0413 -0.8066
21 1 -0.4850 0.8400 0.0004
22 1 -0.3650 -3.1037 -1.2141
23 1 0.2275 -1.5317 -1.8024
24 1 1.3155 -3.9113 -4.3721
25 1 0.9433 -5.8821 2.2871
26 1 -0.4020 -7.7003 0.9684
27 1 0.0632 -4.4420 -1.7021
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000739086123.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:54:25
Heat of formation + Delta-G solvation = -78.595965 kcal
Electronic energy + Delta-G solvation = -17366.142860 eV
Core-core repulsion = 14285.440053 eV
Total energy + Delta-G solvation = -3080.702808 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 239.067 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-42.13613 -39.99258 -38.13167 -35.70613 -34.68731 -32.60372 -31.75606 -29.56841
-27.85260 -25.29854 -22.46016 -21.41636 -21.08179 -19.51154 -17.69807 -17.36937
-16.93819 -16.23900 -15.94951 -15.57886 -15.00020 -14.77259 -14.10558 -13.64357
-13.38483 -12.60726 -12.53725 -12.44353 -12.03615 -11.61789 -11.35625 -11.12811
-11.00902 -10.81404 -10.34230 -10.09070 -9.30302 -9.04812 -8.70545 -8.36341
-7.56538 -6.46677 -4.27951 1.89267 2.54713 2.60603 3.12713 3.21457
3.27432 3.33213 3.43407 4.04695 4.41326 4.63392 4.95444 5.03097
5.26817 5.47392 5.62320 5.81025 6.03126 6.07908 6.30575 6.36532
6.71253 6.85121 7.35138 7.47854 8.23675 8.28650 8.39706 9.02721
9.12972 9.82169 10.61060
Molecular weight = 239.07amu
Principal moments of inertia in cm(-1)
A = 0.027500 B = 0.009720 C = 0.008122
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1017.935219 B = 2880.093182 C = 3446.647959
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.871 5.871
2 C 0.045 3.955
3 Si 0.925 3.075
4 H -0.265 1.265
5 H -0.279 1.279
6 H -0.278 1.278
7 C -0.313 4.313
8 H 0.089 0.911
9 N -0.421 5.421
10 C 0.105 3.895
11 C 0.440 3.560
12 O -0.496 6.496
13 O -0.527 6.527
14 C 0.551 3.449
15 O -0.553 6.553
16 C -0.199 4.199
17 C -0.169 4.169
18 C -0.053 4.053
19 O -0.182 6.182
20 C -0.035 4.035
21 H 0.272 0.728
22 H 0.105 0.895
23 H 0.135 0.865
24 H 0.400 0.600
25 H 0.156 0.844
26 H 0.203 0.797
27 H 0.214 0.786
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.686 -7.580 -5.639 10.141
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.506 5.506
2 C -0.161 4.161
3 Si 0.751 3.249
4 H -0.189 1.189
5 H -0.204 1.204
6 H -0.204 1.204
7 C -0.441 4.441
8 H 0.107 0.893
9 N -0.141 5.141
10 C -0.021 4.021
11 C 0.280 3.720
12 O -0.382 6.382
13 O -0.339 6.339
14 C 0.340 3.660
15 O -0.434 6.434
16 C -0.204 4.204
17 C -0.188 4.188
18 C -0.119 4.119
19 O -0.079 6.079
20 C -0.104 4.104
21 H 0.082 0.918
22 H 0.123 0.877
23 H 0.153 0.847
24 H 0.258 0.742
25 H 0.173 0.827
26 H 0.220 0.780
27 H 0.229 0.771
Dipole moment (debyes) X Y Z Total
from point charges -3.559 -7.406 -4.950 9.593
hybrid contribution 0.753 0.620 -0.413 1.059
sum -2.806 -6.787 -5.364 9.094
Atomic orbital electron populations
1.69887 1.06153 1.28135 1.46456 1.25687 0.95448 1.00303 0.94668
0.85893 0.80210 0.80916 0.77918 1.18937 1.20440 1.20372 1.19372
0.93139 0.81753 1.49788 0.89326 1.42721 1.44287 1.12525 1.14585
1.21639 0.92898 1.03217 0.84350 1.25248 0.87685 0.76587 0.82518
1.90713 1.19342 1.47593 1.80524 1.84636 1.50297 1.73921 1.25022
1.17467 0.82544 0.82465 0.83509 1.90627 1.43002 1.82570 1.27193
1.22090 1.05354 0.98164 0.94801 1.22786 1.02531 0.92465 1.01052
1.23820 1.04199 1.00611 0.83254 1.83756 1.62837 1.28819 1.32453
1.25522 0.99509 0.84676 1.00644 0.91845 0.87724 0.84696 0.74203
0.82658 0.77996 0.77051
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -22.90 12.23 55.50 0.68 -22.22 15
2 C 0.05 1.18 5.02 -17.46 -0.09 1.09 15
3 Si 0.92 20.42 29.57 -169.99 -5.03 15.39 15
4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15
5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15
6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15
7 C -0.31 -8.73 8.67 -14.98 -0.13 -8.86 15
8 H 0.09 2.60 7.86 -52.49 -0.41 2.19 15
9 N -0.42 -10.93 1.96 -117.36 -0.23 -11.16 15
10 C 0.11 2.24 5.03 -5.20 -0.03 2.21 15
11 C 0.44 8.40 5.57 36.00 0.20 8.60 15
12 O -0.50 -11.19 17.00 -18.75 -0.32 -11.51 15
13 O -0.53 -7.45 13.23 -39.27 -0.52 -7.97 15
14 C 0.55 14.60 7.35 -12.58 -0.09 14.51 15
15 O -0.55 -16.48 16.96 5.24 0.09 -16.39 15
16 C -0.20 -4.33 6.12 -103.28 -0.63 -4.97 15
17 C -0.17 -3.05 11.03 -37.45 -0.41 -3.47 15
18 C -0.05 -0.77 12.03 29.30 0.35 -0.41 15
19 O -0.18 -2.97 10.52 7.57 0.08 -2.89 15
20 C -0.03 -0.64 9.42 30.11 0.28 -0.36 15
21 H 0.27 6.66 8.31 -40.82 -0.34 6.33 15
22 H 0.11 1.99 5.14 -51.93 -0.27 1.73 15
23 H 0.14 2.96 6.60 -51.92 -0.34 2.62 15
24 H 0.40 3.81 9.10 45.56 0.41 4.22 15
25 H 0.16 2.62 8.06 -52.48 -0.42 2.20 15
26 H 0.20 1.89 8.06 -52.49 -0.42 1.46 15
27 H 0.21 3.61 3.04 -52.49 -0.16 3.46 15
LS Contribution 249.20 15.07 3.76 3.76
Total: -1.00 -34.41 249.20 -2.78 -37.19
By element:
Atomic # 1 Polarization: 8.21 SS G_CDS: -0.75 Total: 7.46 kcal
Atomic # 6 Polarization: 8.89 SS G_CDS: -0.54 Total: 8.34 kcal
Atomic # 7 Polarization: -33.83 SS G_CDS: 0.45 Total: -33.38 kcal
Atomic # 8 Polarization: -38.09 SS G_CDS: -0.67 Total: -38.76 kcal
Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal
Total LS contribution 3.76 Total: 3.76 kcal
Total: -34.41 -2.78 -37.19 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000739086123.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.408 kcal
(2) G-P(sol) polarization free energy of solvation -34.405 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.813 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.783 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.188 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.596 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds