Wall clock time and date at job start Sun Mar 29 2020 21:54:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31409 * 1
3 3 Si 1.86793 * 120.00432 * 2 1
4 4 H 1.48497 * 109.47551 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.47089 * 300.00138 * 3 2 1
6 6 H 1.48511 * 109.47109 * 59.99730 * 3 2 1
7 7 C 1.38986 * 119.99613 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99769 * 192.12158 * 7 2 1
9 9 N 1.36960 * 120.00041 * 11.85251 * 7 2 1
10 10 C 1.46497 * 120.00481 * 53.40424 * 9 7 2
11 11 C 1.50696 * 109.46943 * 97.19951 * 10 9 7
12 12 O 1.20821 * 120.00676 * 0.02562 * 11 10 9
13 13 O 1.34236 * 119.99976 * 180.02562 * 11 10 9
14 14 C 1.34777 * 119.99571 * 233.40353 * 9 7 2
15 15 O 1.21640 * 120.00261 * 1.23006 * 14 9 7
16 16 C 1.47300 * 119.99743 * 181.22295 * 14 9 7
17 17 C 1.47033 * 127.19955 * 190.27649 * 16 14 9
18 18 C 1.34171 * 105.96599 * 179.97438 * 17 16 14
19 19 O 1.34224 * 109.13730 * 359.97438 * 18 17 16
20 20 C 1.33674 * 110.91497 * 359.75279 * 19 18 17
21 21 H 0.96998 * 119.99894 * 359.97438 * 1 2 3
22 22 H 1.08996 * 109.47789 * 217.20397 * 10 9 7
23 23 H 1.09010 * 109.46821 * 337.20320 * 10 9 7
24 24 H 0.96696 * 117.00105 * 180.02562 * 13 11 10
25 25 H 1.08006 * 127.01785 * 359.94159 * 17 16 14
26 26 H 1.07994 * 125.43224 * 180.02562 * 18 17 16
27 27 H 1.08000 * 125.81136 * 180.26297 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2482 1.6176 0.0000
4 1 3.7081 1.3463 0.0006
5 1 1.8895 2.3963 -1.2125
6 1 1.8894 2.3964 1.2126
7 6 2.0089 -1.2037 0.0005
8 1 3.0709 -1.2141 0.1969
9 7 1.3460 -2.3772 -0.2426
10 6 0.5245 -2.5186 -1.4473
11 6 1.3201 -3.2193 -2.5183
12 8 2.4565 -3.5656 -2.2978
13 8 0.7663 -3.4588 -3.7174
14 6 1.4493 -3.4021 0.6267
15 8 2.1133 -3.2771 1.6382
16 6 0.7581 -4.6734 0.3518
17 6 0.5866 -5.8087 1.2703
18 6 -0.1027 -6.7352 0.5872
19 8 -0.3618 -6.2710 -0.6453
20 6 0.1368 -5.0413 -0.8066
21 1 -0.4850 0.8400 0.0004
22 1 -0.3650 -3.1037 -1.2141
23 1 0.2275 -1.5317 -1.8024
24 1 1.3155 -3.9113 -4.3721
25 1 0.9433 -5.8821 2.2871
26 1 -0.4020 -7.7003 0.9684
27 1 0.0632 -4.4420 -1.7021
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000739086123.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:54:25
Heat of formation + Delta-G solvation = -104.772069 kcal
Electronic energy + Delta-G solvation = -17367.277941 eV
Core-core repulsion = 14285.440053 eV
Total energy + Delta-G solvation = -3081.837889 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 239.067 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-43.53914 -41.57179 -39.98463 -37.22416 -36.60686 -34.37363 -33.41864 -31.10726
-29.54798 -27.25403 -24.16918 -22.98311 -22.42599 -21.14446 -19.27147 -19.14608
-18.59268 -17.83582 -17.48566 -17.01233 -16.85310 -16.40395 -15.95037 -15.26052
-15.11672 -14.40253 -14.08057 -13.90797 -13.54260 -13.43899 -13.06850 -12.94199
-12.76129 -12.50254 -12.11000 -11.73863 -11.05573 -10.78698 -10.72445 -9.75698
-9.56256 -8.46976 -6.37700 0.37431 1.04501 1.17945 1.38454 1.40187
1.54034 1.83676 2.05327 2.24483 2.52076 2.83397 3.03077 3.66652
3.71102 4.00864 4.03182 4.42748 4.55948 4.61154 4.72853 4.94166
5.36072 5.38488 5.55080 5.97372 6.18955 6.37856 6.93957 7.03528
7.13474 7.83223 8.60759
Molecular weight = 239.07amu
Principal moments of inertia in cm(-1)
A = 0.027500 B = 0.009720 C = 0.008122
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1017.935219 B = 2880.093182 C = 3446.647959
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.886 5.886
2 C 0.015 3.985
3 Si 0.988 3.012
4 H -0.274 1.274
5 H -0.256 1.256
6 H -0.274 1.274
7 C -0.351 4.351
8 H 0.057 0.943
9 N -0.432 5.432
10 C 0.104 3.896
11 C 0.458 3.542
12 O -0.534 6.534
13 O -0.501 6.501
14 C 0.531 3.469
15 O -0.611 6.611
16 C -0.244 4.244
17 C -0.206 4.206
18 C -0.008 4.008
19 O -0.171 6.171
20 C -0.016 4.016
21 H 0.281 0.719
22 H 0.127 0.873
23 H 0.128 0.872
24 H 0.428 0.572
25 H 0.156 0.844
26 H 0.264 0.736
27 H 0.224 0.776
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.279 -8.602 -7.271 12.439
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.521 5.521
2 C -0.190 4.190
3 Si 0.810 3.190
4 H -0.199 1.199
5 H -0.180 1.180
6 H -0.199 1.199
7 C -0.479 4.479
8 H 0.075 0.925
9 N -0.150 5.150
10 C -0.021 4.021
11 C 0.299 3.701
12 O -0.423 6.423
13 O -0.315 6.315
14 C 0.323 3.677
15 O -0.497 6.497
16 C -0.249 4.249
17 C -0.225 4.225
18 C -0.073 4.073
19 O -0.065 6.065
20 C -0.085 4.085
21 H 0.091 0.909
22 H 0.144 0.856
23 H 0.146 0.854
24 H 0.290 0.710
25 H 0.174 0.826
26 H 0.280 0.720
27 H 0.240 0.760
Dipole moment (debyes) X Y Z Total
from point charges -5.203 -8.445 -6.664 11.950
hybrid contribution 1.163 0.838 0.027 1.434
sum -4.040 -7.607 -6.637 10.873
Atomic orbital electron populations
1.69919 1.06941 1.29492 1.45787 1.26389 0.96354 1.02746 0.93498
0.84982 0.78325 0.76847 0.78812 1.19873 1.17978 1.19908 1.19281
0.92379 0.83622 1.52619 0.92524 1.42874 1.44047 1.12030 1.16091
1.21619 0.93115 1.03736 0.83648 1.24444 0.86446 0.75753 0.83409
1.90722 1.20802 1.49306 1.81473 1.84530 1.49873 1.73529 1.23570
1.18240 0.82278 0.84252 0.82901 1.90550 1.45684 1.83999 1.29445
1.21942 1.07579 0.97595 0.97749 1.22968 1.05247 0.92687 1.01637
1.24802 1.00216 1.01063 0.81240 1.83813 1.61944 1.27513 1.33274
1.25451 0.98082 0.85317 0.99674 0.90942 0.85570 0.85426 0.70972
0.82619 0.71996 0.76035
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -46.78 12.23 21.67 0.27 -46.52 15
2 C 0.01 0.79 5.02 84.94 0.43 1.22 15
3 Si 0.99 42.25 29.57 68.60 2.03 44.28 15
4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15
5 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15
6 H -0.27 -11.47 7.11 99.48 0.71 -10.77 15
7 C -0.35 -20.54 8.67 84.07 0.73 -19.81 15
8 H 0.06 3.58 7.86 -2.91 -0.02 3.56 15
9 N -0.43 -23.26 1.96 -643.45 -1.26 -24.52 15
10 C 0.10 4.42 5.03 85.63 0.43 4.85 15
11 C 0.46 17.02 5.57 71.23 0.40 17.42 15
12 O -0.53 -24.13 17.00 21.98 0.37 -23.76 15
13 O -0.50 -12.59 13.23 -51.47 -0.68 -13.27 15
14 C 0.53 29.56 7.35 86.63 0.64 30.20 15
15 O -0.61 -38.94 16.96 -4.16 -0.07 -39.01 15
16 C -0.24 -10.69 6.12 -18.99 -0.12 -10.81 15
17 C -0.21 -7.27 11.03 23.65 0.26 -7.01 15
18 C -0.01 -0.19 12.03 66.89 0.80 0.61 15
19 O -0.17 -4.90 10.52 4.18 0.04 -4.86 15
20 C -0.02 -0.56 9.42 67.41 0.64 0.08 15
21 H 0.28 13.59 8.31 -92.71 -0.77 12.82 15
22 H 0.13 4.71 5.14 -2.39 -0.01 4.70 15
23 H 0.13 5.60 6.60 -2.38 -0.02 5.58 15
24 H 0.43 6.48 9.10 -74.06 -0.67 5.80 15
25 H 0.16 5.33 8.06 -2.91 -0.02 5.30 15
26 H 0.26 3.18 8.06 -2.91 -0.02 3.16 15
27 H 0.22 7.11 3.04 -2.91 -0.01 7.10 15
Total: -1.00 -79.68 249.20 5.48 -74.20
By element:
Atomic # 1 Polarization: 16.15 SS G_CDS: 0.57 Total: 16.72 kcal
Atomic # 6 Polarization: 12.53 SS G_CDS: 4.20 Total: 16.74 kcal
Atomic # 7 Polarization: -70.04 SS G_CDS: -0.99 Total: -71.04 kcal
Atomic # 8 Polarization: -80.56 SS G_CDS: -0.33 Total: -80.90 kcal
Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal
Total: -79.68 5.48 -74.20 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000739086123.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.571 kcal
(2) G-P(sol) polarization free energy of solvation -79.677 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.248 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.201 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.772 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds