Wall clock time and date at job start Sun Mar 29 2020 21:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99598 * 2 1 4 4 H 1.48504 * 109.47130 * 274.99144 * 3 2 1 5 5 H 1.48494 * 109.47434 * 34.99208 * 3 2 1 6 6 H 1.48504 * 109.46951 * 154.99463 * 3 2 1 7 7 C 1.38979 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99814 * 212.46986 * 7 2 1 9 9 N 1.36979 * 119.99581 * 32.47746 * 7 2 1 10 10 C 1.46494 * 120.00286 * 8.62330 * 9 7 2 11 11 C 1.50701 * 109.47368 * 267.86959 * 10 9 7 12 12 O 1.20822 * 119.99513 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00055 * 180.02562 * 11 10 9 14 14 C 1.34782 * 119.99570 * 188.62447 * 9 7 2 15 15 O 1.21631 * 120.00234 * 4.26863 * 14 9 7 16 16 C 1.47350 * 119.99853 * 184.26928 * 14 9 7 17 17 C 1.41321 * 126.42074 * 341.74289 * 16 14 9 18 18 N 1.30450 * 108.02665 * 179.70334 * 17 16 14 19 19 N 1.39927 * 108.91353 * 0.43780 * 18 17 16 20 20 H 0.96996 * 125.75546 * 179.80764 * 19 18 17 21 21 C 1.34292 * 108.49786 * 359.55380 * 19 18 17 22 22 H 0.96998 * 120.00659 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47263 * 27.87671 * 10 9 7 24 24 H 1.09004 * 109.47196 * 147.86906 * 10 9 7 25 25 H 0.96699 * 117.00094 * 179.97438 * 13 11 10 26 26 H 1.08001 * 125.99302 * 0.02562 * 17 16 14 27 27 H 1.07998 * 126.29726 * 180.24045 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.3899 2.1074 -1.3948 5 1 1.5022 2.6199 0.8028 6 1 3.5943 1.4121 0.5918 7 6 2.0090 -1.2036 0.0005 8 1 2.9624 -1.2764 0.5027 9 7 1.4847 -2.2973 -0.6360 10 6 0.2915 -2.1552 -1.4739 11 6 -0.9389 -2.4197 -0.6450 12 8 -0.8302 -2.6979 0.5257 13 8 -2.1555 -2.3462 -1.2072 14 6 2.0667 -3.5044 -0.4913 15 8 3.0100 -3.6381 0.2649 16 6 1.5603 -4.6620 -1.2493 17 6 0.2950 -4.7705 -1.8693 18 7 0.2256 -5.9399 -2.4433 19 7 1.4211 -6.6297 -2.2132 20 1 1.6297 -7.5231 -2.5282 21 6 2.2333 -5.8443 -1.4874 22 1 -0.4851 0.8400 -0.0004 23 1 0.2482 -1.1429 -1.8758 24 1 0.3369 -2.8704 -2.2952 25 1 -2.9148 -2.5244 -0.6356 26 1 -0.4772 -4.0154 -1.8723 27 1 3.2294 -6.0918 -1.1514 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739087251.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:28 Heat of formation + Delta-G solvation = -13.247335 kcal Electronic energy + Delta-G solvation = -17480.762327 eV Core-core repulsion = 14435.186000 eV Total energy + Delta-G solvation = -3045.576327 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.02860 -39.32493 -37.82872 -35.24630 -34.51118 -32.26011 -31.12816 -29.71971 -27.87423 -25.16459 -22.23925 -21.52563 -21.02789 -19.07610 -17.73632 -17.19517 -16.88894 -15.83098 -15.61681 -14.91387 -14.53406 -14.38345 -14.12792 -13.68316 -13.04321 -12.69939 -12.51288 -11.96646 -11.71274 -11.35688 -10.90655 -10.74298 -10.45776 -10.36609 -10.28291 -9.66013 -9.45409 -9.00934 -8.61647 -8.29088 -7.98384 -6.53563 -3.80102 1.98840 2.61411 3.01914 3.18174 3.25953 3.31923 3.38846 3.84037 4.12085 4.37559 4.68147 5.09793 5.13125 5.25730 5.65854 5.77982 5.84301 6.06380 6.40218 6.49632 6.70892 7.39412 7.45254 7.53540 7.79127 8.00002 8.36813 8.98258 9.08275 9.30436 9.88111 10.55862 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.028908 B = 0.010119 C = 0.008132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.355817 B = 2766.319520 C = 3442.542156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.033 3.967 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.114 0.886 9 N -0.419 5.419 10 C 0.124 3.876 11 C 0.480 3.520 12 O -0.491 6.491 13 O -0.535 6.535 14 C 0.525 3.475 15 O -0.582 6.582 16 C -0.253 4.253 17 C 0.053 3.947 18 N -0.303 5.303 19 N -0.473 5.473 20 H 0.438 0.562 21 C 0.104 3.896 22 H 0.272 0.728 23 H 0.123 0.877 24 H 0.097 0.903 25 H 0.394 0.606 26 H 0.194 0.806 27 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 -6.326 -7.099 9.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.171 4.171 3 Si 0.747 3.253 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.437 4.437 8 H 0.132 0.868 9 N -0.137 5.137 10 C -0.003 4.003 11 C 0.320 3.680 12 O -0.375 6.375 13 O -0.347 6.347 14 C 0.315 3.685 15 O -0.467 6.467 16 C -0.268 4.268 17 C -0.134 4.134 18 N -0.125 5.125 19 N -0.179 5.179 20 H 0.282 0.718 21 C -0.047 4.047 22 H 0.082 0.918 23 H 0.141 0.859 24 H 0.115 0.885 25 H 0.251 0.749 26 H 0.210 0.790 27 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.485 -6.979 -7.289 10.200 hybrid contribution 0.133 0.955 0.876 1.303 sum -1.352 -6.024 -6.413 8.902 Atomic orbital electron populations 1.70005 1.06312 1.28157 1.45598 1.25193 0.95009 1.00048 0.96898 0.86000 0.80142 0.80908 0.78297 1.20220 1.21194 1.19128 1.19743 1.04547 0.85426 1.33982 0.86842 1.43314 1.21758 1.07166 1.41432 1.21298 0.81862 1.05456 0.91684 1.23798 0.83949 0.72207 0.88060 1.90639 1.86363 1.43212 1.17327 1.84529 1.17306 1.84838 1.48017 1.16886 0.86175 0.81083 0.84360 1.90603 1.31636 1.83695 1.40759 1.20722 0.96260 0.98453 1.11376 1.24832 0.97772 0.94994 0.95796 1.77045 1.02985 1.07461 1.25059 1.46102 1.12368 1.16386 1.43073 0.71837 1.22902 0.97124 0.90632 0.94049 0.91797 0.85918 0.88544 0.74871 0.78974 0.79605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.47 9.60 55.50 0.53 -21.93 15 2 C 0.03 0.85 4.66 -17.46 -0.08 0.77 15 3 Si 0.92 20.05 29.66 -169.99 -5.04 15.01 15 4 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 5 H -0.29 -6.25 7.11 56.52 0.40 -5.84 15 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 7 C -0.31 -8.54 9.34 -14.98 -0.14 -8.68 15 8 H 0.11 3.29 7.39 -52.48 -0.39 2.90 15 9 N -0.42 -10.71 2.12 -117.33 -0.25 -10.96 15 10 C 0.12 2.72 4.75 -5.20 -0.02 2.69 15 11 C 0.48 10.67 4.36 36.01 0.16 10.83 15 12 O -0.49 -12.98 16.89 -18.75 -0.32 -13.30 15 13 O -0.54 -9.48 13.31 -39.25 -0.52 -10.00 15 14 C 0.52 13.22 7.56 -12.55 -0.09 13.12 15 15 O -0.58 -16.33 16.56 5.25 0.09 -16.24 15 16 C -0.25 -5.15 5.86 -105.07 -0.62 -5.77 15 17 C 0.05 0.98 9.48 -16.97 -0.16 0.82 15 18 N -0.30 -5.09 12.63 30.87 0.39 -4.70 15 19 N -0.47 -6.42 7.29 30.87 0.22 -6.19 15 20 H 0.44 3.92 8.96 -182.73 -1.64 2.29 15 21 C 0.10 1.65 11.88 -16.52 -0.20 1.45 15 22 H 0.27 6.69 8.31 -40.82 -0.34 6.35 15 23 H 0.12 2.74 6.40 -51.93 -0.33 2.41 15 24 H 0.10 1.81 4.52 -51.93 -0.23 1.57 15 25 H 0.39 5.37 9.10 45.56 0.41 5.79 15 26 H 0.19 3.52 3.55 -52.49 -0.19 3.34 15 27 H 0.19 2.43 8.06 -52.49 -0.42 2.01 15 LS Contribution 243.56 15.07 3.67 3.67 Total: -1.00 -35.20 243.56 -4.30 -39.50 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -1.92 Total: 9.91 kcal Atomic # 6 Polarization: 16.39 SS G_CDS: -1.16 Total: 15.23 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.90 Total: -43.78 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.75 Total: -39.54 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.04 Total: 15.01 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -35.20 -4.30 -39.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087251.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.252 kcal (2) G-P(sol) polarization free energy of solvation -35.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds